BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0252b.2
(515 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC210743 similar to UP|Q42412 (Q42412) RNA-binding protein RZ-1,... 51 1e-06
TC215891 similar to GB|AAM78058.1|21928059|AY125548 AT5g61030/ma... 50 2e-06
TC209402 48 1e-05
BM086366 47 2e-05
TC209876 similar to UP|Q9ASP6 (Q9ASP6) AT4g00830/A_TM018A10_14, ... 47 3e-05
TC225318 similar to UP|P93486 (P93486) Glycine-rich RNA-binding ... 47 3e-05
TC225319 similar to UP|P93486 (P93486) Glycine-rich RNA-binding ... 46 4e-05
TC217707 similar to UP|Q941H8 (Q941H8) RNA-binding protein precu... 46 4e-05
CD393416 weakly similar to GP|15822703|gb| RNA-binding protein p... 46 4e-05
TC204084 UP|Q9SWA8 (Q9SWA8) Glycine-rich RNA-binding protein, co... 45 6e-05
TC225240 similar to UP|Q9LEB4 (Q9LEB4) RNA Binding Protein 45, p... 45 8e-05
TC207339 similar to UP|Q84ZB9 (Q84ZB9) RNA recognition motif (RR... 45 1e-04
TC225236 similar to UP|Q84LL7 (Q84LL7) Salt tolerance protein 6,... 44 1e-04
TC225235 similar to GB|AAP37853.1|30725662|BT008494 At1g11650 {A... 44 1e-04
TC225237 similar to UP|Q9LEB4 (Q9LEB4) RNA Binding Protein 45, p... 44 1e-04
TC225241 similar to UP|Q9LEB4 (Q9LEB4) RNA Binding Protein 45, p... 44 2e-04
TC204093 similar to UP|ROC1_NICSY (Q08935) 29 kDa ribonucleoprot... 44 2e-04
TC219249 weakly similar to GB|AAC00006.1|2828149|AF042385 cyclop... 44 2e-04
TC204079 similar to UP|Q9SWA8 (Q9SWA8) Glycine-rich RNA-binding ... 43 3e-04
TC225238 similar to UP|Q9LEB4 (Q9LEB4) RNA Binding Protein 45, p... 43 3e-04
>TC210743 similar to UP|Q42412 (Q42412) RNA-binding protein RZ-1, partial
(53%)
Length = 452
Score = 50.8 bits (120), Expect = 1e-06
Identities = 28/78 (35%), Positives = 44/78 (55%)
Frame = +3
Query: 47 FVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFGFVRFTSWKVAAVAIKSLD 106
F+ G+A S S +++ F +FG+L+ V K GR FGFV F K AI +++
Sbjct: 90 FIGGLAWSTSDRKLKDTFEKFGKLIEAKVVVDKFSGRSRGFGFVTFDDKKAMDEAIDAMN 269
Query: 107 GVRLGGASLSVGLAKPPQ 124
G+ L G +++V A+P Q
Sbjct: 270 GMDLDGRTITVDRAQPQQ 323
>TC215891 similar to GB|AAM78058.1|21928059|AY125548 AT5g61030/maf19_30
{Arabidopsis thaliana;} , partial (41%)
Length = 782
Score = 50.1 bits (118), Expect = 2e-06
Identities = 25/75 (33%), Positives = 44/75 (58%)
Frame = +2
Query: 46 LFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFGFVRFTSWKVAAVAIKSL 105
LF+ G++ S +R F+++G +V+ + ++ GR FGF+ +TS + A+ AI++L
Sbjct: 179 LFIGGVSYSTDEQSLREAFSKYGEVVDARIIMDRETGRSRGFGFITYTSVEEASSAIQAL 358
Query: 106 DGVRLGGASLSVGLA 120
DG L G + V A
Sbjct: 359 DGQDLHGRPIRVNYA 403
>TC209402
Length = 1163
Score = 47.8 bits (112), Expect = 1e-05
Identities = 27/90 (30%), Positives = 46/90 (51%)
Frame = +1
Query: 33 NQKCSGVSRVCVSLFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFGFVRF 92
N + S +S V S++V + E+++ +++ LF G++ V + K + RFGFV F
Sbjct: 187 NSESSAISLV-KSVYVKNLPENITQDRLKELFEHHGKITKVVLPSAKSGQEKSRFGFVHF 363
Query: 93 TSWKVAAVAIKSLDGVRLGGASLSVGLAKP 122
A A+K+ + + G L LAKP
Sbjct: 364 AERSSAMKALKNTEKYEIDGQLLECSLAKP 453
>BM086366
Length = 427
Score = 47.0 bits (110), Expect = 2e-05
Identities = 23/77 (29%), Positives = 42/77 (53%)
Frame = +2
Query: 46 LFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFGFVRFTSWKVAAVAIKSL 105
+FV G++ V+ Q+ FA++G+++ + ++ GR FGF+ F + AIK +
Sbjct: 95 IFVGGLSWEVTERQLEHAFARYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIKEM 274
Query: 106 DGVRLGGASLSVGLAKP 122
G +G +SV A+P
Sbjct: 275 HGREIGDRIISVNKAQP 325
>TC209876 similar to UP|Q9ASP6 (Q9ASP6) AT4g00830/A_TM018A10_14, partial
(36%)
Length = 812
Score = 46.6 bits (109), Expect = 3e-05
Identities = 32/103 (31%), Positives = 48/103 (46%), Gaps = 8/103 (7%)
Frame = +1
Query: 28 DGSTP--------NQKCSGVSRVCVSLFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKK 79
DG+TP N S +L+V I E+V+ Q++ LF + G + V + K
Sbjct: 37 DGNTPTVTWADPKNSPDHSASSQVKALYVKNIPENVTTEQLKELFRRHGEVTKVVMPPGK 216
Query: 80 KLGRRFRFGFVRFTSWKVAAVAIKSLDGVRLGGASLSVGLAKP 122
G+R FGF+ + A A+K + + G L V LAKP
Sbjct: 217 AGGKR-DFGFIHYAERSSALKAVKDTEKYEIDGQMLEVVLAKP 342
>TC225318 similar to UP|P93486 (P93486) Glycine-rich RNA-binding protein
PsGRBP, partial (86%)
Length = 749
Score = 46.6 bits (109), Expect = 3e-05
Identities = 25/75 (33%), Positives = 42/75 (55%)
Frame = +2
Query: 46 LFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFGFVRFTSWKVAAVAIKSL 105
LF+ G++ V ++ F+ FG +V+ V + GR FGFV F++ + A+ A+ ++
Sbjct: 176 LFIGGLSYGVDDQSLKDAFSGFGDVVDAKVITDRDSGRSRGFGFVNFSNDESASSALSAM 355
Query: 106 DGVRLGGASLSVGLA 120
DG L G S+ V A
Sbjct: 356 DGKDLNGRSIRVSYA 400
>TC225319 similar to UP|P93486 (P93486) Glycine-rich RNA-binding protein
PsGRBP, partial (88%)
Length = 1167
Score = 46.2 bits (108), Expect = 4e-05
Identities = 25/75 (33%), Positives = 42/75 (55%)
Frame = +3
Query: 46 LFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFGFVRFTSWKVAAVAIKSL 105
LF+ G++ V ++ F+ FG +V+ V + GR FGFV F++ + A+ A+ ++
Sbjct: 372 LFIGGLSYGVDDQSLKDAFSGFGDVVDAKVITDRDSGRSRGFGFVNFSNDESASSALSAM 551
Query: 106 DGVRLGGASLSVGLA 120
DG L G S+ V A
Sbjct: 552 DGKDLDGRSIRVSYA 596
>TC217707 similar to UP|Q941H8 (Q941H8) RNA-binding protein precursor,
partial (35%)
Length = 1008
Score = 46.2 bits (108), Expect = 4e-05
Identities = 30/91 (32%), Positives = 48/91 (51%)
Frame = +1
Query: 30 STPNQKCSGVSRVCVSLFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFGF 89
STP+ + S LFV GI+ S +R A++G +++V V ++ GR FGF
Sbjct: 121 STPSLFQAIRSMSSAKLFVGGISYSTDDMSLRESPARYGEVIDVKVIMDRETGRSRGFGF 300
Query: 90 VRFTSWKVAAVAIKSLDGVRLGGASLSVGLA 120
+ F + + A+ AI+ +DG L G + V A
Sbjct: 301 ITFATSEDASYAIQGMDGQDLHGRRIRVNYA 393
>CD393416 weakly similar to GP|15822703|gb| RNA-binding protein precursor
{Nicotiana tabacum}, partial (29%)
Length = 733
Score = 46.2 bits (108), Expect = 4e-05
Identities = 28/78 (35%), Positives = 44/78 (55%)
Frame = -2
Query: 30 STPNQKCSGVSRVCVSLFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFGF 89
STP+ + S LFV GI+ S +R FA++G +++V V ++ GR FGF
Sbjct: 723 STPSLFQAIRSMSSAKLFVGGISYSTDDMSLRESFARYGEVIDVKVIMDRETGRSRGFGF 544
Query: 90 VRFTSWKVAAVAIKSLDG 107
V F + + A+ AI+ +DG
Sbjct: 543 VTFATSEDASSAIQGMDG 490
>TC204084 UP|Q9SWA8 (Q9SWA8) Glycine-rich RNA-binding protein, complete
Length = 1937
Score = 45.4 bits (106), Expect = 6e-05
Identities = 24/75 (32%), Positives = 41/75 (54%)
Frame = +2
Query: 47 FVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFGFVRFTSWKVAAVAIKSLD 106
FV G+A + H + F+Q+G +V + ++ GR FGFV F S + AI +++
Sbjct: 1250 FVGGLAWATDDHALERAFSQYGEIVETKIINDRETGRSRGFGFVTFASEQSMKDAIGAMN 1429
Query: 107 GVRLGGASLSVGLAK 121
G L G +++V A+
Sbjct: 1430 GQNLDGRNITVNEAQ 1474
Score = 43.9 bits (102), Expect = 2e-04
Identities = 29/82 (35%), Positives = 38/82 (45%)
Frame = -1
Query: 44 VSLFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFGFVRFTSWKVAAVAIK 103
+ LFV + SV ++ LF G + V V K GR FGFV +S + A A K
Sbjct: 881 LKLFVGNLPFSVDSARLAELFESAGNVEVVEVIYDKTTGRSRGFGFVTMSSVEEAEAAAK 702
Query: 104 SLDGVRLGGASLSVGLAKPPQK 125
+G L G SL V PP +
Sbjct: 701 QFNGYELDGRSLRVNSGPPPAR 636
Score = 38.5 bits (88), Expect = 0.007
Identities = 33/98 (33%), Positives = 45/98 (45%), Gaps = 1/98 (1%)
Frame = -1
Query: 29 GSTPNQKCSGVSRVCVSLFVDGIAESVSYHQIRGLFAQFGRLV-NVFVQRKKKLGRRFRF 87
GS+ + G S + V +A V + LF + G+ V V ++ GR F
Sbjct: 608 GSSFGSRGGGPSDSENRVHVGNLAWGVDDVALESLFREQGKKVLEARVIYDRESGRSRGF 429
Query: 88 GFVRFTSWKVAAVAIKSLDGVRLGGASLSVGLAKPPQK 125
GFV F S AI+SLDGV L G ++ V LA K
Sbjct: 428 GFVTFGSPDEVKSAIQSLDGVDLNGRAIRVSLADSKPK 315
>TC225240 similar to UP|Q9LEB4 (Q9LEB4) RNA Binding Protein 45, partial (48%)
Length = 928
Score = 45.1 bits (105), Expect = 8e-05
Identities = 27/92 (29%), Positives = 47/92 (50%)
Frame = +1
Query: 45 SLFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFGFVRFTSWKVAAVAIKS 104
++FV + +V+ +R +F Q+G LV+V + K R GFV+F A A++
Sbjct: 268 TIFVGNLDPNVTDDHLRQVFGQYGELVHVKIPAGK------RCGFVQFADRSCAEEALRV 429
Query: 105 LDGVRLGGASLSVGLAKPPQKVVSRSDAKVAN 136
L+G LGG ++ + + P ++ DA N
Sbjct: 430 LNGTLLGGQNVRLSWGRSPSNKQAQPDANQWN 525
>TC207339 similar to UP|Q84ZB9 (Q84ZB9) RNA recognition motif
(RRM)-containing protein-like, partial (63%)
Length = 838
Score = 44.7 bits (104), Expect = 1e-04
Identities = 25/78 (32%), Positives = 44/78 (56%)
Frame = +3
Query: 45 SLFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFGFVRFTSWKVAAVAIKS 104
+LFV G+++ + ++R FA+FG +V+ V + G FGFV++ + + AA I+
Sbjct: 204 NLFVSGLSKRTNTERLREEFAKFGEVVHARVVTDRVSGYSKGFGFVQYATIEDAAKGIEG 383
Query: 105 LDGVRLGGASLSVGLAKP 122
+DG L G + A+P
Sbjct: 384 MDGKFLDGWVIFAEYARP 437
>TC225236 similar to UP|Q84LL7 (Q84LL7) Salt tolerance protein 6, partial
(39%)
Length = 825
Score = 44.3 bits (103), Expect = 1e-04
Identities = 25/87 (28%), Positives = 47/87 (53%)
Frame = +3
Query: 45 SLFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFGFVRFTSWKVAAVAIKS 104
++FV + +V+ +R +F+Q+G LV+V + K R GFV+F A A++
Sbjct: 198 TIFVGNLDPNVTDDHLRQVFSQYGELVHVKIPAGK------RCGFVQFADRSCAEEALRV 359
Query: 105 LDGVRLGGASLSVGLAKPPQKVVSRSD 131
L+G LGG ++ + + P +++D
Sbjct: 360 LNGTLLGGQNVRLSWGRSPSNKQAQAD 440
>TC225235 similar to GB|AAP37853.1|30725662|BT008494 At1g11650 {Arabidopsis
thaliana;} , partial (64%)
Length = 1154
Score = 44.3 bits (103), Expect = 1e-04
Identities = 25/87 (28%), Positives = 47/87 (53%)
Frame = +3
Query: 45 SLFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFGFVRFTSWKVAAVAIKS 104
++FV + +V+ +R +F+Q+G LV+V + K R GFV+F A A++
Sbjct: 852 TIFVGNLDPNVTDDHLRQVFSQYGELVHVKIPAGK------RCGFVQFADRSCAEEALRV 1013
Query: 105 LDGVRLGGASLSVGLAKPPQKVVSRSD 131
L+G LGG ++ + + P +++D
Sbjct: 1014LNGTLLGGQNVRLSWGRSPSNKQAQAD 1094
>TC225237 similar to UP|Q9LEB4 (Q9LEB4) RNA Binding Protein 45, partial (79%)
Length = 1560
Score = 44.3 bits (103), Expect = 1e-04
Identities = 25/87 (28%), Positives = 47/87 (53%)
Frame = +3
Query: 45 SLFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFGFVRFTSWKVAAVAIKS 104
++FV + +V+ +R +F+Q+G LV+V + K R GFV+F A A++
Sbjct: 918 TIFVGNLDPNVTDDHLRQVFSQYGELVHVKIPAGK------RCGFVQFADRSCAEEALRV 1079
Query: 105 LDGVRLGGASLSVGLAKPPQKVVSRSD 131
L+G LGG ++ + + P +++D
Sbjct: 1080LNGTLLGGQNVRLSWGRSPSNKQAQAD 1160
>TC225241 similar to UP|Q9LEB4 (Q9LEB4) RNA Binding Protein 45, partial (50%)
Length = 898
Score = 43.9 bits (102), Expect = 2e-04
Identities = 25/88 (28%), Positives = 46/88 (51%)
Frame = +3
Query: 44 VSLFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFGFVRFTSWKVAAVAIK 103
+ +FV + +V+ +R +F+Q+G LV+V + K R GFV+F A A++
Sbjct: 534 LQIFVGNLDPNVTDDHLRQVFSQYGELVHVKIPAGK------RCGFVQFADRSCAEEALR 695
Query: 104 SLDGVRLGGASLSVGLAKPPQKVVSRSD 131
L+G LGG ++ + + P + +D
Sbjct: 696 VLNGTLLGGQNVRLSWGRSPSNKQAHAD 779
>TC204093 similar to UP|ROC1_NICSY (Q08935) 29 kDa ribonucleoprotein A,
chloroplast precursor (CP29A), partial (63%)
Length = 1403
Score = 43.9 bits (102), Expect = 2e-04
Identities = 33/108 (30%), Positives = 46/108 (42%)
Frame = +2
Query: 18 DVGDEAADEEDGSTPNQKCSGVSRVCVSLFVDGIAESVSYHQIRGLFAQFGRLVNVFVQR 77
D+G E DG P+ + LFV + +V Q+ LF G + V V
Sbjct: 269 DLGQEEDTFSDGDGPSFSPD------LKLFVGNLPFNVDSAQLAELFESAGNVEVVEVIY 430
Query: 78 KKKLGRRFRFGFVRFTSWKVAAVAIKSLDGVRLGGASLSVGLAKPPQK 125
K GR FGFV +S + A A + +G L G +L V PP +
Sbjct: 431 DKTTGRSRGFGFVTMSSVEEAEAAAQQFNGYELDGRALRVNSGPPPAR 574
>TC219249 weakly similar to GB|AAC00006.1|2828149|AF042385 cyclophilin-33A
{Homo sapiens;} , partial (28%)
Length = 1185
Score = 43.5 bits (101), Expect = 2e-04
Identities = 25/78 (32%), Positives = 40/78 (51%)
Frame = +1
Query: 45 SLFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFGFVRFTSWKVAAVAIKS 104
+L+V G+AE V+ + F FG + +V + + FGFV F + A+ A+ +
Sbjct: 106 TLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEREDASAAMDN 285
Query: 105 LDGVRLGGASLSVGLAKP 122
+DG L G L+V A P
Sbjct: 286 MDGAELYGRVLTVNYALP 339
>TC204079 similar to UP|Q9SWA8 (Q9SWA8) Glycine-rich RNA-binding protein,
complete
Length = 748
Score = 43.1 bits (100), Expect = 3e-04
Identities = 23/75 (30%), Positives = 40/75 (52%)
Frame = +1
Query: 47 FVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFGFVRFTSWKVAAVAIKSLD 106
FV G+A + + F+Q+G +V + ++ GR FGFV F S + AI+ ++
Sbjct: 97 FVGGLAWATDDQALERAFSQYGEIVETKIINDRETGRSRGFGFVTFASEQSMKDAIEGMN 276
Query: 107 GVRLGGASLSVGLAK 121
G L G +++V A+
Sbjct: 277 GQNLDGRNITVNEAQ 321
>TC225238 similar to UP|Q9LEB4 (Q9LEB4) RNA Binding Protein 45, partial (31%)
Length = 1258
Score = 43.1 bits (100), Expect = 3e-04
Identities = 26/92 (28%), Positives = 46/92 (49%)
Frame = +1
Query: 45 SLFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFGFVRFTSWKVAAVAIKS 104
++FV + +V+ +R +F +G LV+V + K R GFV+F A A++
Sbjct: 634 TIFVGNLDPNVTDDHLRQVFGHYGELVHVKIPAGK------RCGFVQFADRSCAEEALRV 795
Query: 105 LDGVRLGGASLSVGLAKPPQKVVSRSDAKVAN 136
L+G LGG ++ + + P ++ DA N
Sbjct: 796 LNGTLLGGQNVRLSWGRSPSNKQAQPDANQWN 891
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.320 0.139 0.415
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,250,054
Number of Sequences: 63676
Number of extensions: 381192
Number of successful extensions: 2081
Number of sequences better than 10.0: 98
Number of HSP's better than 10.0 without gapping: 2041
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2077
length of query: 515
length of database: 12,639,632
effective HSP length: 101
effective length of query: 414
effective length of database: 6,208,356
effective search space: 2570259384
effective search space used: 2570259384
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)
Lotus: description of TM0252b.2