BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0250.7
(423 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC207279 homologue to UP|Q8GTR1 (Q8GTR1) Geranylgeranyl diphosph... 462 e-130
TC226903 similar to UP|Q8S948 (Q8S948) Solanesyl diphosphate syn... 239 2e-63
BU082085 similar to GP|12055493|emb geranyl diphosphat synthase ... 140 2e-38
CA938534 similar to GP|12055493|emb geranyl diphosphat synthase ... 141 5e-34
BE330807 similar to GP|19911233|db solanesyl diphosphate synthas... 128 6e-30
AW423890 weakly similar to GP|12055493|em geranyl diphosphat syn... 124 6e-29
AI900241 similar to GP|12055493|emb geranyl diphosphat synthase ... 89 5e-18
TC219477 similar to UP|Q8LSC5 (Q8LSC5) Geranylgeranyl pyrophosph... 71 8e-13
TC218727 similar to UP|Q8LSC5 (Q8LSC5) Geranylgeranyl pyrophosph... 59 5e-09
TC230012 similar to UP|Q94ID7 (Q94ID7) Geranylgeranyl diphosphat... 54 1e-07
TC207893 similar to UP|Q39108 (Q39108) Geranylgeranyl pyrophosph... 52 7e-07
BI469993 43 2e-04
TC215593 homologue to UP|FPP1_LUPAL (P49351) Farnesyl pyrophosph... 39 0.006
TC228640 similar to UP|Q8RW17 (Q8RW17) Aux/IAA protein, partial ... 29 4.6
TC222768 similar to UP|Q41440 (Q41440) Mitochondrial processing ... 29 4.6
TC231496 29 4.6
BF425592 weakly similar to GP|18139887|gb O-linked N-acetyl gluc... 28 6.0
>TC207279 homologue to UP|Q8GTR1 (Q8GTR1) Geranylgeranyl diphosphate
synthase, partial (60%)
Length = 1059
Score = 462 bits (1189), Expect = e-130
Identities = 236/254 (92%), Positives = 249/254 (97%)
Frame = +3
Query: 170 ITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEV 229
ITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEV
Sbjct: 3 ITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEV 182
Query: 230 VSLLAKVVEHLVTGETMQMSTTSDQRCSMEYYMQKTYYKTASLISNSCKAIAILAGQTAD 289
VSLLAKVVEHLVTGETMQM+TTSDQRCSMEYYMQKTYYKTASLISNSCKAIAILAGQTA+
Sbjct: 183 VSLLAKVVEHLVTGETMQMTTTSDQRCSMEYYMQKTYYKTASLISNSCKAIAILAGQTAE 362
Query: 290 VAMLAFDYGKNLGLAFQLIDDVLDFTGTSASLGKGSLSDIRHGIVTAPILFAMEEFPQLR 349
VAMLAF+YGKNLGLAFQLIDDVLDFTGTSASLGKGSLSDIRHGIVTAPILFAMEEFPQLR
Sbjct: 363 VAMLAFEYGKNLGLAFQLIDDVLDFTGTSASLGKGSLSDIRHGIVTAPILFAMEEFPQLR 542
Query: 350 TVVDEGFDNPENVDIALEYLGKSRGIQRTRELAIKHADLAAAAIDSLPESDDGEVRLSRR 409
+VDEGF+NP NVD+ALEYLGKSRGIQRTRELA++HA+LAAAAIDSLPE+DD +VR SR+
Sbjct: 543 AIVDEGFENPANVDLALEYLGKSRGIQRTRELAVEHANLAAAAIDSLPENDDEDVRKSRK 722
Query: 410 ALVDLTQRVITRTK 423
AL+DLT RVITRTK
Sbjct: 723 ALIDLTHRVITRTK 764
>TC226903 similar to UP|Q8S948 (Q8S948) Solanesyl diphosphate synthase,
partial (82%)
Length = 1548
Score = 239 bits (610), Expect = 2e-63
Identities = 132/325 (40%), Positives = 212/325 (64%), Gaps = 3/325 (0%)
Frame = +1
Query: 78 SEEELDP---FSLVADELSFIANNLRAMVIAEVPKLASGAEYFFKMGVEGKRFRPTVLLL 134
SE+ + P F +VAD+L + NL+++V AE P L S AE F G GKR RP ++ L
Sbjct: 214 SEDPISPARLFEVVADDLLTLNKNLQSIVGAENPVLMSAAEQIFSAG--GKRMRPALVFL 387
Query: 135 MSTALNLPIPKPPPSNDLGGTFTADLRSRQQRIAEITEMIHVASLLHDDVLDDADTRRGI 194
+S A + +L G +L ++ +R+AEI EMIH ASL+HDDVLD++D RRG
Sbjct: 388 VSRA----------TAELLGL--KELTAKHRRLAEIIEMIHTASLIHDDVLDESDLRRGK 531
Query: 195 GSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVSLLAKVVEHLVTGETMQMSTTSDQ 254
+++ + G ++AVLAGDF+ +++ LA+L+N +V+ L+++V++ +GE Q S+ D
Sbjct: 532 KTVHQMFGTRVAVLAGDFMFAQSSWYLANLENIQVIKLISQVIKDFASGEIKQASSLFDC 711
Query: 255 RCSMEYYMQKTYYKTASLISNSCKAIAILAGQTADVAMLAFDYGKNLGLAFQLIDDVLDF 314
++ Y+ K+YYKTASLI+ S K AI +G + V ++YG+NLGL+FQ++DD+LDF
Sbjct: 712 DVQLDEYLIKSYYKTASLIAASTKGAAIFSGADSSVTEKMYEYGRNLGLSFQVVDDILDF 891
Query: 315 TGTSASLGKGSLSDIRHGIVTAPILFAMEEFPQLRTVVDEGFDNPENVDIALEYLGKSRG 374
T ++ LGK + SD+ G +TAP++FA+E+ P+LR +++ F +++ A+ + G
Sbjct: 892 TQSAEQLGKPAGSDLAKGNLTAPVIFALEKEPKLRDIIESEFSEVGSLEEAINLVKSCGG 1071
Query: 375 IQRTRELAIKHADLAAAAIDSLPES 399
I+R +ELA + ADLA ++ LP+S
Sbjct: 1072IERAQELAKEKADLAIQSLQCLPQS 1146
>BU082085 similar to GP|12055493|emb geranyl diphosphat synthase {Quercus
robur}, partial (21%)
Length = 407
Score = 140 bits (353), Expect(3) = 2e-38
Identities = 81/125 (64%), Positives = 86/125 (68%)
Frame = +3
Query: 131 VLLLMSTALNLPIPKPPPSNDLGGTFTADLRSRQQRIAEITEMIHVASLLHDDVLDDADT 190
VL LMSTALNL I + PP +LGG T D+RSRQQRIAEITEMIHVASLLHDDVLDDADT
Sbjct: 27 VLFLMSTALNLSIHEAPPPIELGGALTVDVRSRQQRIAEITEMIHVASLLHDDVLDDADT 206
Query: 191 RRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVSLLAKVVEHLVTGETMQMST 250
RRGIGSLNFVMGNK LA VVEHLVTGETMQM+T
Sbjct: 207 RRGIGSLNFVMGNK----------------------------LA*VVEHLVTGETMQMTT 302
Query: 251 TSDQR 255
TS Q+
Sbjct: 303 TSYQQ 317
Score = 35.8 bits (81), Expect(3) = 2e-38
Identities = 18/23 (78%), Positives = 19/23 (82%)
Frame = +1
Query: 264 KTYYKTASLISNSCKAIAILAGQ 286
K Y ASL+SNSCKAIAILAGQ
Sbjct: 337 KDYN*AASLMSNSCKAIAILAGQ 405
Score = 21.6 bits (44), Expect(3) = 2e-38
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +2
Query: 258 MEYYMQKT 265
MEYYMQKT
Sbjct: 320 MEYYMQKT 343
>CA938534 similar to GP|12055493|emb geranyl diphosphat synthase {Quercus
robur}, partial (14%)
Length = 443
Score = 141 bits (356), Expect = 5e-34
Identities = 78/113 (69%), Positives = 87/113 (76%), Gaps = 1/113 (0%)
Frame = +1
Query: 8 SRISRNLRGSLNGTRRLLSIQEQNHQSLQSHHYHTPTG-STAKVMRSLAFSKGLPALHSS 66
SRIS+NLRGS N R SI + NH L H++H+ G ST +VMRSL FSKG PALHSS
Sbjct: 106 SRISKNLRGSFNSCRWFRSIGDHNHCFLSPHNFHSRGGDSTQQVMRSLIFSKG-PALHSS 282
Query: 67 RYQIHDQSSSISEEELDPFSLVADELSFIANNLRAMVIAEVPKLASGAEYFFK 119
RY IH QSSSI E+E DPFSLVADELS + N LRAMV+AEVPKLAS AEYFFK
Sbjct: 283 RYLIHHQSSSIVEDEHDPFSLVADELSLLGNKLRAMVVAEVPKLASAAEYFFK 441
>BE330807 similar to GP|19911233|db solanesyl diphosphate synthase
{Arabidopsis thaliana}, partial (42%)
Length = 544
Score = 128 bits (321), Expect = 6e-30
Identities = 70/180 (38%), Positives = 116/180 (63%)
Frame = -1
Query: 160 LRSRQQRIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACV 219
L ++ +R AEI +M H A L+HDDVLD++ RRG ++ + ++AVLA F+L+++
Sbjct: 544 LTAKHRR*AEIMKMTHPARLIHDDVLDESAFRRGFIPVHLMFVTRVAVLAEAFMLAQSSW 365
Query: 220 ALASLKNTEVVSLLAKVVEHLVTGETMQMSTTSDQRCSMEYYMQKTYYKTASLISNSCKA 279
LA+L+N V+ L+++V+ L +G Q S+ D ++ Y+ K+YYKTASLI S +
Sbjct: 364 YLANLENILVIKLISQVI*DLASGHIKQASSLFDCDVPLDEYIIKSYYKTASLIVASTQG 185
Query: 280 IAILAGQTADVAMLAFDYGKNLGLAFQLIDDVLDFTGTSASLGKGSLSDIRHGIVTAPIL 339
AI +G + V +YG++LGL+FQ++DD+LDFT ++ +G SD G ++AP++
Sbjct: 184 AAIFSGAVSSVPHKMCEYGRHLGLSFQVVDDILDFTQSAELMG*HVGSDRAKGNLSAPVI 5
>AW423890 weakly similar to GP|12055493|em geranyl diphosphat synthase
{Quercus robur}, partial (24%)
Length = 301
Score = 124 bits (312), Expect = 6e-29
Identities = 63/100 (63%), Positives = 78/100 (78%)
Frame = +2
Query: 324 GSLSDIRHGIVTAPILFAMEEFPQLRTVVDEGFDNPENVDIALEYLGKSRGIQRTRELAI 383
GSL +IRHGIVTAP+ FA++EFP + +VD+GF +P N D+ALEYL KS+GIQRTR LA+
Sbjct: 2 GSLLNIRHGIVTAPLSFALDEFPHMHAIVDDGFHHPPNGDLALEYL*KSQGIQRTRHLAV 181
Query: 384 KHADLAAAAIDSLPESDDGEVRLSRRALVDLTQRVITRTK 423
+HA+ +AA IDSLP VR S RAL+DLT RVITR K
Sbjct: 182 QHANTSAAPIDSLPHIHYEYVRHSTRALIDLTHRVITRPK 301
>AI900241 similar to GP|12055493|emb geranyl diphosphat synthase {Quercus
robur}, partial (7%)
Length = 393
Score = 88.6 bits (218), Expect = 5e-18
Identities = 48/73 (65%), Positives = 54/73 (73%), Gaps = 1/73 (1%)
Frame = +3
Query: 8 SRISRNLRGSLNGTRRLLSIQEQNHQSLQSHHYHTPTG-STAKVMRSLAFSKGLPALHSS 66
SRISRNLRGS N R LSI + NH+ L H++H+ G ST +VMRSL SKGLPALHSS
Sbjct: 162 SRISRNLRGSFNSCRGFLSIGDHNHRFLSLHNFHSRGGDSTQQVMRSLIISKGLPALHSS 341
Query: 67 RYQIHDQSSSISE 79
RY IH QSSSI E
Sbjct: 342 RYLIHHQSSSIVE 380
>TC219477 similar to UP|Q8LSC5 (Q8LSC5) Geranylgeranyl pyrophosphate
synthase, partial (77%)
Length = 1106
Score = 71.2 bits (173), Expect = 8e-13
Identities = 58/190 (30%), Positives = 98/190 (51%), Gaps = 17/190 (8%)
Frame = +2
Query: 172 EMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALAS------ 223
EMIH SL+HDD+ +D+ D RRG + + + G +AVLAGD LL+ A +A+
Sbjct: 437 EMIHTMSLIHDDLPCMDNDDLRRGKPTSHKIFGEHVAVLAGDALLALAFEHVAASTEGAY 616
Query: 224 -LKNTEVVSLLAKVV--EHLVTGETMQMSTT------SDQRCSMEYYMQKTYYKTASLIS 274
+ + LAK + E ++ G+ + +++ SD+ +E +KTA ++
Sbjct: 617 AARVVRAIGELAKCIGAEGVMAGQVVDVNSEGLTLSMSDEVAVLERLEFIHVHKTA-VVE 793
Query: 275 NSCKAIAILAGQTADVAMLAFDYGKNLGLAFQLIDDVLDFTGTSASLGKGSLSDIRHGIV 334
+ AIL G + + +G+ +GL Q++DDVLD T +S LGK + D+ +
Sbjct: 794 GAVVMGAILGGGSDEEIERLRMFGRCIGLLGQVVDDVLDVTKSSEELGKTAKKDLVADKL 973
Query: 335 TAPILFAMEE 344
T P + + E
Sbjct: 974 TYPKVLGIHE 1003
>TC218727 similar to UP|Q8LSC5 (Q8LSC5) Geranylgeranyl pyrophosphate
synthase, partial (55%)
Length = 892
Score = 58.5 bits (140), Expect = 5e-09
Identities = 56/179 (31%), Positives = 90/179 (49%), Gaps = 18/179 (10%)
Frame = +1
Query: 200 VMGNKLAVLAGDFLLSRACVALASLKNTEVVSL---------LAKVV--EHLVTGETMQM 248
V G +AVLAGD LL+ A +A+ +TE VS LAK + E LV G+ + +
Sbjct: 25 VYGEDVAVLAGDALLAFAFEHVAA--STEGVSPSRVVRAIGELAKSIGTEGLVAGQVVDI 198
Query: 249 STTSDQRCSMEYYMQKTYYKTASLISNSCKAIAILAGQTADVAMLAFDYGKNLGLAFQLI 308
+ +E ++TA+L+ + AI+ G + + + + +GL FQ++
Sbjct: 199 DSEGVANVGLETLEFIHVHQTAALLEAAVVLGAIVGGGSDEEVEKLRKFARCIGLLFQVV 378
Query: 309 DDVLDFTGTSASLGKGSLSDIRHGIVTAPILFAME---EFPQ--LRTVVDE--GFDNPE 360
DD+LD T +S LGK + D+ VT P L ++ EF Q L+ ++ GFD P+
Sbjct: 379 DDILDVTKSSEELGKTAGKDLVADKVTYPKLLGIDKSKEFAQELLKDAKEQLSGFDPPK 555
>TC230012 similar to UP|Q94ID7 (Q94ID7) Geranylgeranyl diphosphate synthase
, partial (40%)
Length = 522
Score = 53.9 bits (128), Expect = 1e-07
Identities = 34/107 (31%), Positives = 55/107 (50%)
Frame = +2
Query: 238 EHLVTGETMQMSTTSDQRCSMEYYMQKTYYKTASLISNSCKAIAILAGQTADVAMLAFDY 297
E LV G+ + +++ +E +KTA+L+ + AIL G T D +
Sbjct: 20 EGLVAGQVVDINSEGLADVGLERLEFIHVHKTAALLEGAVVLGAILGGGTDDEVEKLRKF 199
Query: 298 GKNLGLAFQLIDDVLDFTGTSASLGKGSLSDIRHGIVTAPILFAMEE 344
+ +GL FQ++DD+LD T +S LGK + D+ VT P L +E+
Sbjct: 200 ARYIGLLFQVVDDILDVTKSSQELGKTAGKDLVADKVTYPKLLGIEK 340
>TC207893 similar to UP|Q39108 (Q39108) Geranylgeranyl pyrophosphate
synthase-related protein precursor, partial (49%)
Length = 973
Score = 51.6 bits (122), Expect = 7e-07
Identities = 41/151 (27%), Positives = 74/151 (48%), Gaps = 9/151 (5%)
Frame = +1
Query: 172 EMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEV 229
EM+H ASL+HDD+ +DD+ +RRG S + + G +A+LAGD L + S +++
Sbjct: 40 EMVHAASLIHDDLPCMDDSPSRRGQPSNHTIYGVDMAILAGDALFPLGFRHIVSQTPSDL 219
Query: 230 V--SLLAKVVEHLV-----TGETMQMSTTSDQRCSMEYYMQKTYYKTASLISNSCKAIAI 282
V S L +V+ + TG + + ++Q+ K + +S
Sbjct: 220 VPESHLLRVIAEIARSVGSTGMAAGQFLDLEGGPNAVGFIQEK--KFGEMGESSAVCGGF 393
Query: 283 LAGQTADVAMLAFDYGKNLGLAFQLIDDVLD 313
LAG D YG+ +G+ + ++DD+++
Sbjct: 394 LAGAEDDEIERLRRYGRAVGVLYAVVDDIIE 486
>BI469993
Length = 333
Score = 43.1 bits (100), Expect = 2e-04
Identities = 27/64 (42%), Positives = 38/64 (59%), Gaps = 3/64 (4%)
Frame = +3
Query: 78 SEEELDP---FSLVADELSFIANNLRAMVIAEVPKLASGAEYFFKMGVEGKRFRPTVLLL 134
SE+ + P F +VAD+L + NL+++V AE P L S A Y F GKR RP ++ L
Sbjct: 102 SEDPISPARLFEVVADDLLTLNKNLQSIV*AENPVLMSAAVYXF--SPRGKRMRPALVFL 275
Query: 135 MSTA 138
+S A
Sbjct: 276 VSRA 287
>TC215593 homologue to UP|FPP1_LUPAL (P49351) Farnesyl pyrophosphate
synthetase 1 (FPP synthetase 1) (FPS 1) (Farnesyl
diphosphate synthetase 1) [Includes:
Dimethylallyltranstransferase ; Geranyltranstransferase
] , complete
Length = 1368
Score = 38.5 bits (88), Expect = 0.006
Identities = 50/208 (24%), Positives = 93/208 (44%), Gaps = 14/208 (6%)
Frame = +1
Query: 172 EMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKN----- 226
E + L+ DD++D++ TRRG F + + A D +L R + K+
Sbjct: 304 EWLQAYFLVLDDIMDNSHTRRG-QPCWFRVPKVGMIAANDGVLLRNHIPRILKKHFRGKP 480
Query: 227 --TEVVSLLAKVVEHLVTGETMQMSTTSD-----QRCSMEYYMQKTYYKTASLISNSCKA 279
+++ L +V +G+ + + TT + + ++ + + YKTA A
Sbjct: 481 YYVDLLDLFNEVEFQTASGQMIDLITTLEGEKDLSKYTLTLHRRIVQYKTAYYSFYLPVA 660
Query: 280 IAIL-AGQTADVAMLAFDYGKNLGLAFQLIDDVLDFTGTSASLGKGSLSDIRHGIVTAPI 338
A+L AG+ D + + +G FQ+ DD LD G ++GK +DI + I
Sbjct: 661 CALLMAGEDLDKNVDVKNILVEMGTYFQVQDDYLDCFGDPQTIGKIG-TDIEDFKCSWLI 837
Query: 339 LFAME-EFPQLRTVVDEGFDNPENVDIA 365
+ A+E Q + V+ E + P+ ++A
Sbjct: 838 VKALELSNEQQKKVLQENYGKPDPENVA 921
>TC228640 similar to UP|Q8RW17 (Q8RW17) Aux/IAA protein, partial (51%)
Length = 1344
Score = 28.9 bits (63), Expect = 4.6
Identities = 23/84 (27%), Positives = 32/84 (37%)
Frame = +2
Query: 25 LSIQEQNHQSLQSHHYHTPTGSTAKVMRSLAFSKGLPALHSSRYQIHDQSSSISEEELDP 84
LS+ HH H PT A++ + F A SS SSS S +
Sbjct: 236 LSLSSGPSSKSHHHHVHAPTTLYARIYTAKDFPSSAAAASSS-----PSSSSSSSPNITA 400
Query: 85 FSLVADELSFIANNLRAMVIAEVP 108
+ A S +ANN + V+ P
Sbjct: 401 GTKRAAADSLVANNRPSQVVGWPP 472
>TC222768 similar to UP|Q41440 (Q41440) Mitochondrial processing peptidase ,
partial (42%)
Length = 664
Score = 28.9 bits (63), Expect = 4.6
Identities = 36/131 (27%), Positives = 55/131 (41%), Gaps = 3/131 (2%)
Frame = +2
Query: 41 HTPTGSTAKVMRSLAFSKGLP-ALHSSRYQIHDQSSSISEEELDPFSLVADELSFIANNL 99
+ P G + + S +S L L +S ++ +SS+ EE F+A N
Sbjct: 83 NNPQGLLLEAVHSAGYSGALANPLLASETALNRLNSSLLEE-------------FVAENY 223
Query: 100 RA--MVIAEVPKLASGAEYFFKMGVEGKRFRPTVLLLMSTALNLPIPKPPPSNDLGGTFT 157
A MV+A ASG E+ + V L+S ++P P+ P SN +GG F
Sbjct: 224 TASRMVLA-----ASGVEHEELLSVAEP--------LLSDLPSVPRPEEPKSNYVGGDFR 364
Query: 158 ADLRSRQQRIA 168
S R+A
Sbjct: 365 RQGESGVARVA 397
>TC231496
Length = 1295
Score = 28.9 bits (63), Expect = 4.6
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = +1
Query: 130 TVLLLMSTALNLPIPKPPPSNDLGGTFTADLRSRQQR 166
TV M+TA P P PPPS+ + T TA R +++R
Sbjct: 334 TVDQSMTTA---PFPPPPPSSSVEATVTATSRRKRRR 435
>BF425592 weakly similar to GP|18139887|gb O-linked N-acetyl glucosamine
transferase {Arabidopsis thaliana}, partial (11%)
Length = 400
Score = 28.5 bits (62), Expect = 6.0
Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 5/46 (10%)
Frame = -3
Query: 34 SLQSHHYHTPTGSTAKVMRSLAFSKGLPA-----LHSSRYQIHDQS 74
S+QSHH H+ T AF K +PA H S Y H+QS
Sbjct: 143 SIQSHH*HSRHSRTPPHFSCCAFQKQIPADEARHYHQSHYS-HNQS 9
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.319 0.134 0.368
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,227,780
Number of Sequences: 63676
Number of extensions: 197534
Number of successful extensions: 1443
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 1424
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1436
length of query: 423
length of database: 12,639,632
effective HSP length: 100
effective length of query: 323
effective length of database: 6,272,032
effective search space: 2025866336
effective search space used: 2025866336
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)
Lotus: description of TM0250.7