BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0249.15
(521 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC231542 similar to UP|Q8LBK2 (Q8LBK2) BCS1 protein-like protein... 295 4e-80
TC218933 similar to UP|Q9FN78 (Q9FN78) AAA-type ATPase-like prot... 252 3e-67
TC212951 similar to UP|Q8LBK2 (Q8LBK2) BCS1 protein-like protein... 223 2e-58
BM085501 similar to GP|9759053|dbj AAA-type ATPase-like protein ... 223 2e-58
AI443254 weakly similar to GP|9759050|dbj| AAA-type ATPase-like ... 196 3e-50
TC222476 similar to UP|Q9FN75 (Q9FN75) AAA-type ATPase-like prot... 181 5e-46
BI315909 similar to GP|18086343|gb AT3g50930/F18B3_210 {Arabidop... 180 1e-45
CO985072 180 2e-45
CA801759 similar to GP|9294272|dbj mitochondrial protein-like {A... 173 2e-43
BQ742690 similar to GP|9294272|dbj mitochondrial protein-like {A... 158 5e-39
TC220287 similar to UP|Q9FRW0 (Q9FRW0) Mitochondrial protein-lik... 138 7e-33
TC235083 similar to UP|Q9LH82 (Q9LH82) Similarity to AAA-type AT... 137 2e-32
TC218932 similar to UP|Q9FN78 (Q9FN78) AAA-type ATPase-like prot... 127 9e-30
TC234458 weakly similar to UP|Q8LBK2 (Q8LBK2) BCS1 protein-like ... 112 3e-25
AW101753 108 6e-24
TC210693 weakly similar to UP|Q9FN78 (Q9FN78) AAA-type ATPase-li... 107 1e-23
BG509352 weakly similar to GP|18700084|gb At2g46620/F13A10.15 {A... 103 1e-22
BF425036 weakly similar to GP|9294274|dbj| mitochondrial protein... 99 5e-21
CO978630 89 5e-18
TC211748 similar to GB|AAN28905.1|23506091|AY143966 At2g46620/F1... 89 6e-18
>TC231542 similar to UP|Q8LBK2 (Q8LBK2) BCS1 protein-like protein, partial
(34%)
Length = 1025
Score = 295 bits (754), Expect = 4e-80
Identities = 156/271 (57%), Positives = 199/271 (72%)
Frame = +1
Query: 235 DLNRFVKRKEFYKKVGRAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIFDLQLGNIVRDS 294
DL RFVKRKE+Y++VG+AWKRGYLLYGPPGTGKSSLIAAMANYLKFD++DL+L + +S
Sbjct: 1 DLERFVKRKEYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELTELNANS 180
Query: 295 DLRKLLLATANRSILVIEDIDCSVDLTERRNGGDGQTDVQAHRESDGWMQLTLSGLLNFI 354
+LR+LL+A ANRSILV+EDIDC+V+ +RR + +A + Q+TLSGLLNFI
Sbjct: 181 ELRRLLIAMANRSILVVEDIDCTVEFHDRR------AEARAASGHNNDRQVTLSGLLNFI 342
Query: 355 DGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDVHIHMSYCSYQGFKLLASNYLSNISP 414
DGLWSSCGDERIIVFTTNHK++LDPALLRPGRMDVHIHMSYC+ GF+ LASNYL
Sbjct: 343 DGLWSSCGDERIIVFTTNHKDKLDPALLRPGRMDVHIHMSYCTPCGFRQLASNYL---GI 513
Query: 415 DHQSLFGEIEGLIEDIQITPAQVAEELMKSEDADATLEGFVKLLKRKKMEGDVCENFSAP 474
SLF +IE ++ Q+TPA+VAE+L+KS + +LE + + RKK E E
Sbjct: 514 KEHSLFEKIEEEMQKTQVTPAEVAEQLLKSSHIETSLEQLIDFM-RKKKETQKLEAKKKE 690
Query: 475 DKAEEPSKRRKVAAGCKKKRGGGGVGINENN 505
+A+E +R+++ G K G V ++NN
Sbjct: 691 QEAKEEQQRKEIDDGGK----GEKVDSDDNN 771
>TC218933 similar to UP|Q9FN78 (Q9FN78) AAA-type ATPase-like protein, partial
(21%)
Length = 803
Score = 252 bits (643), Expect = 3e-67
Identities = 133/173 (76%), Positives = 145/173 (82%), Gaps = 3/173 (1%)
Frame = +3
Query: 352 NFIDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDVHIHMSYCSYQGFKLLASNYLSN 411
NFIDGLWSSCGDERII+FTTNHKERLDPALLRPGRMD+HIHMSYCSYQGFK+LASNYL
Sbjct: 3 NFIDGLWSSCGDERIIIFTTNHKERLDPALLRPGRMDMHIHMSYCSYQGFKILASNYLE- 179
Query: 412 ISPDHQSLFGEIEGLIEDIQITPAQVAEELMKSEDADATLEGFVKLLKRKKMEGDVCENF 471
+P LFGE+EGLIEDIQITPAQVAEELMK+ED +ATLEGFVKLLKRKKMEGDVCEN
Sbjct: 180 -TPSDHPLFGEVEGLIEDIQITPAQVAEELMKNEDPEATLEGFVKLLKRKKMEGDVCEN- 353
Query: 472 SAPDKAE---EPSKRRKVAAGCKKKRGGGGVGINENNGTVAVTQRRTRRGCSL 521
S PDKAE + SKRRKV GCK+KR GVGIN++ V + R RGCSL
Sbjct: 354 STPDKAEPTHQQSKRRKV--GCKQKR---GVGINKSISGVTQIRTRRMRGCSL 497
>TC212951 similar to UP|Q8LBK2 (Q8LBK2) BCS1 protein-like protein, partial
(26%)
Length = 808
Score = 223 bits (568), Expect = 2e-58
Identities = 116/210 (55%), Positives = 155/210 (73%), Gaps = 3/210 (1%)
Frame = +1
Query: 258 LLYGPPGTGKSSLIAAMANYLKFDIFDLQLGNIVRDSDLRKLLLATANRSILVIEDIDCS 317
LLYGP GTGKSSLIAA+ANYLK D++DL+L ++ +S+L +++ T RSI+VIEDIDC+
Sbjct: 1 LLYGPXGTGKSSLIAAIANYLKXDVYDLELSSMXSNSELMRVMRETTXRSIIVIEDIDCN 180
Query: 318 VDLTER---RNGGDGQTDVQAHRESDGWMQLTLSGLLNFIDGLWSSCGDERIIVFTTNHK 374
++ R + D +D R + TLSGLLN +DGLWSS G+ERII+FTTNH+
Sbjct: 181 KEVHARPTTKPFSDSDSDFDRKRVKVKPYRFTLSGLLNNMDGLWSSGGEERIIIFTTNHR 360
Query: 375 ERLDPALLRPGRMDVHIHMSYCSYQGFKLLASNYLSNISPDHQSLFGEIEGLIEDIQITP 434
ER+DPALLRPGRMD+HIH+S+ + F++LASNYL DH SLF EI+GL+E +++TP
Sbjct: 361 ERIDPALLRPGRMDMHIHLSFLKGKAFRVLASNYLG--IEDH-SLFEEIDGLLEKLEVTP 531
Query: 435 AQVAEELMKSEDADATLEGFVKLLKRKKME 464
A VAE+LM++ED + LEG V+ LK K E
Sbjct: 532 AVVAEQLMRNEDPEVALEGLVEFLKEKDKE 621
>BM085501 similar to GP|9759053|dbj AAA-type ATPase-like protein {Arabidopsis
thaliana}, partial (21%)
Length = 421
Score = 223 bits (568), Expect = 2e-58
Identities = 110/128 (85%), Positives = 120/128 (92%)
Frame = +3
Query: 343 MQLTLSGLLNFIDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDVHIHMSYCSYQGFK 402
+QL+L GLLNFIDGLWSSCGDERII+ TTNHKERLDPALLRPGRMD+HIHMSYCSY GFK
Sbjct: 24 VQLSLCGLLNFIDGLWSSCGDERIIILTTNHKERLDPALLRPGRMDMHIHMSYCSYHGFK 203
Query: 403 LLASNYLSNISPDHQSLFGEIEGLIEDIQITPAQVAEELMKSEDADATLEGFVKLLKRKK 462
+LASNYL +I+PDH+ L GEIEGLIED+QITPAQVAEELMKSEDAD LEGF+KLLKRKK
Sbjct: 204 VLASNYL-DIAPDHR-LVGEIEGLIEDMQITPAQVAEELMKSEDADTALEGFLKLLKRKK 377
Query: 463 MEGDVCEN 470
MEGDVCEN
Sbjct: 378 MEGDVCEN 401
>AI443254 weakly similar to GP|9759050|dbj| AAA-type ATPase-like protein
{Arabidopsis thaliana}, partial (4%)
Length = 392
Score = 196 bits (497), Expect = 3e-50
Identities = 96/133 (72%), Positives = 116/133 (87%)
Frame = +2
Query: 89 ENERLKISKTPKEKKLTIRLEKDEKVEDIYNGASLIWKFICAETEKNSTLSNNHDIHNNS 148
ENERLKISK+ KEKKLT+RLEK EKV D ++GA W+FICAE+EKN+ N+H +NNS
Sbjct: 2 ENERLKISKSAKEKKLTVRLEKGEKVVDCFDGACFKWRFICAESEKNNP--NDHS-NNNS 172
Query: 149 VSLRSEKRYFELSFLKEHKEMVLECYLPFILDRAKEMKDEDRVLKIHTLNASYCYNVIKW 208
+S+RSEKR FELSF K++KEMVL+ YLPFIL++AKEMKDE+RVLK+HTLN SYCY+ +KW
Sbjct: 173 ISVRSEKRSFELSFPKKYKEMVLDSYLPFILEKAKEMKDEERVLKMHTLNTSYCYSGVKW 352
Query: 209 DSINLEHPSTFET 221
DSINLEHPSTFET
Sbjct: 353 DSINLEHPSTFET 391
>TC222476 similar to UP|Q9FN75 (Q9FN75) AAA-type ATPase-like protein, partial
(18%)
Length = 480
Score = 181 bits (460), Expect = 5e-46
Identities = 91/104 (87%), Positives = 98/104 (93%), Gaps = 2/104 (1%)
Frame = +1
Query: 233 MEDLNRFVKRKEFYKKVGRAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIFDLQLGNIVR 292
+EDL+RFVKRKEFYK+VGRAWKRGYLLYGPPGTGKSSLIAAMANYLKFD+FDL+LG+IVR
Sbjct: 16 IEDLDRFVKRKEFYKRVGRAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVFDLELGSIVR 195
Query: 293 DSDLRKLLLATANRSILVIEDIDCSVDLTERRNGGDG--QTDVQ 334
DSDLRKLLLATANRSILVIEDIDCSVDL ERR+G G Q DVQ
Sbjct: 196 DSDLRKLLLATANRSILVIEDIDCSVDLPERRHGDHGRKQADVQ 327
>BI315909 similar to GP|18086343|gb AT3g50930/F18B3_210 {Arabidopsis
thaliana}, partial (19%)
Length = 417
Score = 180 bits (457), Expect = 1e-45
Identities = 92/138 (66%), Positives = 106/138 (76%), Gaps = 5/138 (3%)
Frame = +2
Query: 254 KRGYLLYGPPGTGKSSLIAAMANYLKFDIFDLQLGNIVRDSDLRKLLLATANRSILVIED 313
KRGYLL GPPGTGKSSLIAAMANYL FD++DL+L ++ R++DLRKLL+ T NRSILV+ED
Sbjct: 2 KRGYLLSGPPGTGKSSLIAAMANYLNFDVYDLELTDVRRNTDLRKLLIGTGNRSILVVED 181
Query: 314 IDCSVDLTERRNGGDGQTDVQA-----HRESDGWMQLTLSGLLNFIDGLWSSCGDERIIV 368
IDCS+ L +R V H + Q+TLSG LNFIDGLWSSCGDERIIV
Sbjct: 182 IDCSLTLQDRLAKPKSSQPVAITPWPFHPHDNPKPQVTLSGFLNFIDGLWSSCGDERIIV 361
Query: 369 FTTNHKERLDPALLRPGR 386
FTTNHK +LDPALLRPGR
Sbjct: 362 FTTNHKNKLDPALLRPGR 415
>CO985072
Length = 839
Score = 180 bits (456), Expect = 2e-45
Identities = 109/239 (45%), Positives = 150/239 (62%), Gaps = 14/239 (5%)
Frame = -3
Query: 280 FDIFDLQLGNIVRDSDLRKLLLATANRSILVIEDIDCSVDLTERRN-------GGDGQTD 332
+D++DL+L + +SDLRKLL+ T+++SI+VIEDIDCS+DLT +R G +G+
Sbjct: 834 YDVYDLELTAVKDNSDLRKLLINTSSKSIMVIEDIDCSLDLTGQRKKRKEKVEGREGKDS 655
Query: 333 VQAHRESDG----WMQLTLSGLLNFIDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMD 388
+ E D ++TLSGLLN IDG+WS+CG ERI+VFTTN E+LDPAL+R GRMD
Sbjct: 654 RKRGDEDDDDDDRGSKVTLSGLLNVIDGIWSACGGERIMVFTTNFVEKLDPALIRRGRMD 475
Query: 389 VHIHMSYCSYQGFKLLASNYLSNISPDHQSLFGEIEGLIEDIQITPAQVAEELMK---SE 445
HI +SYC Y+ FK+LA NYL S HQ LF +IE L+E+ ++TPA VAE LM E
Sbjct: 474 KHIELSYCCYEAFKVLAQNYLGLES--HQ-LFPKIEKLLEETKMTPADVAENLMPKSLDE 304
Query: 446 DADATLEGFVKLLKRKKMEGDVCENFSAPDKAEEPSKRRKVAAGCKKKRGGGGVGINEN 504
+ D L ++ L+R K++ + KAE K+ V +K G G+ EN
Sbjct: 303 EVDTCLHNLIQALERSKVDLE-------KKKAETERKQSNV----QKTSENHGEGMEEN 160
>CA801759 similar to GP|9294272|dbj mitochondrial protein-like {Arabidopsis
thaliana}, partial (26%)
Length = 450
Score = 173 bits (438), Expect = 2e-43
Identities = 86/148 (58%), Positives = 113/148 (76%), Gaps = 8/148 (5%)
Frame = +3
Query: 257 YLLYGPPGTGKSSLIAAMANYLKFDIFDLQLGNIVRDSDLRKLLLATANRSILVIEDIDC 316
YLLYGPPGTGKS++IAA+AN++ +D++DL+L + +++LRKLL+ T ++SI VIEDIDC
Sbjct: 3 YLLYGPPGTGKSTMIAAIANFMNYDVYDLELTAVKDNTELRKLLIETPSKSITVIEDIDC 182
Query: 317 SVDLTERR------NGGDGQTDVQAHRESDGWM--QLTLSGLLNFIDGLWSSCGDERIIV 368
S+DLT +R N + Q D E + ++TLSGLLNFIDG+WS+CG ERIIV
Sbjct: 183 SLDLTGQRKKKKEENEDEEQKDPMRRNEEESSKSSKVTLSGLLNFIDGIWSACGGERIIV 362
Query: 369 FTTNHKERLDPALLRPGRMDVHIHMSYC 396
FTTN+ E+LDPAL+R GRMD HI MSYC
Sbjct: 363 FTTNYVEKLDPALIRRGRMDKHIEMSYC 446
>BQ742690 similar to GP|9294272|dbj mitochondrial protein-like {Arabidopsis
thaliana}, partial (24%)
Length = 405
Score = 158 bits (400), Expect = 5e-39
Identities = 77/134 (57%), Positives = 104/134 (77%), Gaps = 8/134 (5%)
Frame = +2
Query: 253 WKRGYLLYGPPGTGKSSLIAAMANYLKFDIFDLQLGNIVRDSDLRKLLLATANRSILVIE 312
WKRGYLLYGPPGTGKS++IAAMAN+L +D++DL+L + +++LRKLL+ T+++SI+VIE
Sbjct: 2 WKRGYLLYGPPGTGKSTMIAAMANFLGYDLYDLELTAVKDNTELRKLLIETSSKSIIVIE 181
Query: 313 DIDCSVDLTERRNGGDGQTDVQAHRESDGWM--------QLTLSGLLNFIDGLWSSCGDE 364
DIDCS+DLT +R + + + R+ M Q+TLSGLLNFIDGLWS+CG E
Sbjct: 182 DIDCSLDLTGQRRKKKEEVEEKDQRQKQQGMQEREVKSSQVTLSGLLNFIDGLWSACGGE 361
Query: 365 RIIVFTTNHKERLD 378
R+IVFTTN+ E+LD
Sbjct: 362 RLIVFTTNYVEKLD 403
>TC220287 similar to UP|Q9FRW0 (Q9FRW0) Mitochondrial protein-like protein
(Fragment), partial (44%)
Length = 980
Score = 138 bits (347), Expect = 7e-33
Identities = 85/262 (32%), Positives = 146/262 (55%), Gaps = 12/262 (4%)
Frame = +3
Query: 13 IFSAYASMTASIMLVRSMANDLIPQPIRGYLTNAIRRLIIKPRSPTLTLIIEESSG--IA 70
+++ S+ A+I+ + ++ P +R L A + + +P + + E SG +
Sbjct: 216 LWAQMGSLMATIVFMYTIFERFFPPHLREKL-QAYTQKLTNHFNPYIQISFPEFSGERLK 392
Query: 71 RNQVYDAAEAYLSTRVRPENERLKI-----SKTPKEKKLTIRLEKDEKVEDIYNGASLIW 125
+++ Y A + YLS +RLK S+TP L + ++ +E++ D ++G L W
Sbjct: 393 KSEAYTAIQTYLSANSSQRAKRLKAEVVNDSQTP----LVLSMDDNEEITDEFHGIKL-W 557
Query: 126 KFICAETEKNSTLSNNHDIHN--NSVSLRSEKRYFELSFLKEHKEMVLECYLPFILDRAK 183
+ + +SNN +N + EKR+++L+F K H+++V Y+ +LD K
Sbjct: 558 R-------SANKVSNNPQRYNPFSYYGSSDEKRFYKLTFHKRHRDIVTMSYIKHVLDEGK 716
Query: 184 EMKDEDRVLKIHTLNAS---YCYNVIKWDSINLEHPSTFETLAMEPEAKKAVMEDLNRFV 240
+++ +R LK++T N S Y Y KW I EHP+TFETLAM+ K+ +++DL +F
Sbjct: 717 DIEMRNRQLKLYTNNPSSGWYGYKQSKWSHIVFEHPATFETLAMDRRKKEDILKDLVKFK 896
Query: 241 KRKEFYKKVGRAWKRGYLLYGP 262
K K++Y K+G+AWKRGYLLYGP
Sbjct: 897 KGKDYYAKIGKAWKRGYLLYGP 962
>TC235083 similar to UP|Q9LH82 (Q9LH82) Similarity to AAA-type ATPase,
partial (24%)
Length = 724
Score = 137 bits (344), Expect = 2e-32
Identities = 86/207 (41%), Positives = 119/207 (56%), Gaps = 12/207 (5%)
Frame = +3
Query: 314 IDCSVDLTERRN------GGDGQTDVQAHRESDGWM--QLTLSGLLNFIDGLWSSCGDER 365
IDCS+DLT +RN + D E +G ++TLSGLLNFIDG+WS+CG ER
Sbjct: 3 IDCSLDLTGQRNMRRERGEEEEPKDPSKKDEEEGNKNSKVTLSGLLNFIDGIWSACGGER 182
Query: 366 IIVFTTNHKERLDPALLRPGRMDVHIHMSYCSYQGFKLLASNYLSNISPDHQSLFGEIEG 425
II+FTTN ++LDPAL+R GRMD HI +SYC ++ FK+LA NYL D LF I
Sbjct: 183 IIIFTTNFVDKLDPALIRTGRMDKHIELSYCRFEAFKVLAKNYL---DVDSHYLFARIAN 353
Query: 426 LIEDIQITPAQVAEELMK---SEDADATLEGFVKLLKRKKMEGDVCENFSAPDKAE-EPS 481
L+E +TPA +AE LM +ED ++ L ++ L +K E + E +K + EP+
Sbjct: 354 LLEVTNVTPADIAENLMPKCLNEDVESCLLNLIQSLDKKVAEEEEEEAGLNEEKVKGEPT 533
Query: 482 KRRKVAAGCKKKRGGGGVGINENNGTV 508
++ + K G V + NG V
Sbjct: 534 QQ-------ENKNNGHSVEDVKENGFV 593
>TC218932 similar to UP|Q9FN78 (Q9FN78) AAA-type ATPase-like protein, partial
(6%)
Length = 667
Score = 127 bits (320), Expect = 9e-30
Identities = 76/106 (71%), Positives = 83/106 (77%), Gaps = 5/106 (4%)
Frame = +1
Query: 421 GEIEGLIEDIQITPAQVAEELMKSEDADATLEGFVKLLKRKKMEGDVCENFSAPDKAE-- 478
GE+EG IEDIQITPAQVAEELMK+ED +ATLEGFVKLLKRKKMEGDVCEN S PDKAE
Sbjct: 1 GEVEGXIEDIQITPAQVAEELMKNEDPEATLEGFVKLLKRKKMEGDVCEN-STPDKAEPT 177
Query: 479 -EPSKRRKVAAGCKKKRGGGGVGINENNGTVAVTQRRTR--RGCSL 521
+ SKRRKV GCK+KRG ++N V VTQ RTR RGCSL
Sbjct: 178 RQQSKRRKV--GCKQKRG-------KSNSGVHVTQIRTRRMRGCSL 288
>TC234458 weakly similar to UP|Q8LBK2 (Q8LBK2) BCS1 protein-like protein,
partial (19%)
Length = 450
Score = 112 bits (281), Expect = 3e-25
Identities = 55/150 (36%), Positives = 87/150 (57%), Gaps = 2/150 (1%)
Frame = +3
Query: 78 AEAYLSTRVRPENERLKISKTPKEKKLTIRLEKDEKVEDIYNGASLIWKFICAETEKNST 137
AE YL ++ P RLK+SK + + +E++E + D++ W +C + E
Sbjct: 3 AETYLGAKISPNTRRLKVSKPETDTTFALTMERNESLTDVFRSMKFNWVLVCRQVESRGF 182
Query: 138 LSNNHDIHNNSVSLRSEKRYFELSFLKEHKEMVLECYLPFILDRAKEMKDEDRVLKIHTL 197
H+ + + +++SE R EL+F K+HK+MVL+ YLP+IL+ AK MK + LKI T+
Sbjct: 183 ----HNPRDLNATMKSEVRSLELTFNKKHKDMVLQTYLPYILNEAKSMKQATKALKIFTV 350
Query: 198 NASYCYNVIK--WDSINLEHPSTFETLAME 225
+ Y I W + L+HP+TF+TLAME
Sbjct: 351 DYQNMYGNISDAWVGMKLDHPATFDTLAME 440
>AW101753
Length = 341
Score = 108 bits (270), Expect = 6e-24
Identities = 59/118 (50%), Positives = 77/118 (65%), Gaps = 16/118 (13%)
Frame = +2
Query: 274 MANYLKFDIFDLQLGNIVRDSDLRKLLLATANRSILVIEDIDCSVDLTE----------- 322
MAN+L +D++DL+L + +S+LR LL+ T NRSI+VIEDIDCSVD+T
Sbjct: 2 MANFLCYDVYDLELTKVSDNSELRSLLIQTTNRSIIVIEDIDCSVDITADRTVKVKKSQG 181
Query: 323 -----RRNGGDGQTDVQAHRESDGWMQLTLSGLLNFIDGLWSSCGDERIIVFTTNHKE 375
R + GQT E G ++TLSGLLNF DGLWS CG+ERI+VFTTNH++
Sbjct: 182 AKLSLRSSNKKGQTGC----EESG--RVTLSGLLNFTDGLWSCCGEERIVVFTTNHRD 337
>TC210693 weakly similar to UP|Q9FN78 (Q9FN78) AAA-type ATPase-like protein,
partial (18%)
Length = 520
Score = 107 bits (267), Expect = 1e-23
Identities = 54/97 (55%), Positives = 69/97 (70%)
Frame = +1
Query: 365 RIIVFTTNHKERLDPALLRPGRMDVHIHMSYCSYQGFKLLASNYLSNISPDHQSLFGEIE 424
RIIVFTTNHK +LDPALLRPGRMDVHI M+YC+ GFK+LA NYL LF E+E
Sbjct: 1 RIIVFTTNHKNKLDPALLRPGRMDVHIDMTYCTPCGFKMLAFNYL---GITEHPLFVEVE 171
Query: 425 GLIEDIQITPAQVAEELMKSEDADATLEGFVKLLKRK 461
L++ +TPA+V E+ +K+ED + LE ++LL K
Sbjct: 172 TLLKTTNVTPAEVGEQFLKNEDPEIALESLMELLIEK 282
>BG509352 weakly similar to GP|18700084|gb At2g46620/F13A10.15 {Arabidopsis
thaliana}, partial (30%)
Length = 436
Score = 103 bits (258), Expect = 1e-22
Identities = 60/160 (37%), Positives = 92/160 (57%), Gaps = 2/160 (1%)
Frame = +1
Query: 282 IFDLQLGNIVRDSDLRKLLLATANRSILVIEDIDCSVDLTERRNGGDGQTDVQAHRESDG 341
++D+ L I DSDL LL T +S++V+ED+D ++ E +
Sbjct: 1 VYDVDLSKIRGDSDLMFLLTETTAKSVIVVEDLDRFLE-----------------PEPET 129
Query: 342 WMQLTLSGLLNFIDGLWSSC-GDERIIVFTTNHKERLDPALLRPGRMDVHIHMSYCSYQG 400
+T SG+ +F+DG+ S+C G+ER++VFT N KE +DP LLRPGR+DVHIH C +
Sbjct: 130 ATAVTASGIQSFMDGIVSACCGEERVMVFTMNSKECVDPDLLRPGRVDVHIHFPVCDFSA 309
Query: 401 FKLLASNYLSNISPDHQSLFGEIEGLI-EDIQITPAQVAE 439
FK LAS+YL LF ++E + ++PA+++E
Sbjct: 310 FKTLASSYL---GVRKHKLFAQVEEIFRHGATLSPAEISE 420
>BF425036 weakly similar to GP|9294274|dbj| mitochondrial protein-like
{Arabidopsis thaliana}, partial (15%)
Length = 416
Score = 99.0 bits (245), Expect = 5e-21
Identities = 47/84 (55%), Positives = 61/84 (71%)
Frame = -2
Query: 344 QLTLSGLLNFIDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDVHIHMSYCSYQGFKL 403
++TLSGLLNF DGLWS CG+ERI+VFTTNH++ +DPAL+R GRMDVH+ ++ C F+
Sbjct: 415 RVTLSGLLNFTDGLWSCCGEERIVVFTTNHRDSVDPALVRCGRMDVHVSLATCGAHAFRE 236
Query: 404 LASNYLSNISPDHQSLFGEIEGLI 427
LA NYL + LF +EG I
Sbjct: 235 LARNYL---GLESHVLFQAVEGCI 173
>CO978630
Length = 660
Score = 89.0 bits (219), Expect = 5e-18
Identities = 43/106 (40%), Positives = 71/106 (66%), Gaps = 2/106 (1%)
Frame = -1
Query: 344 QLTLSGLLNFIDGLWSSC-GDERIIVFTTNHKERLDPALLRPGRMDVHIHMSYCSYQGFK 402
+++ SG+LNF+D L +SC +ER++VFT N KE +DP LLRPGR+DVHIH C + FK
Sbjct: 657 EISASGILNFMDALLTSCCAEERVMVFTMNTKEHVDPNLLRPGRVDVHIHFPLCDFSAFK 478
Query: 403 LLASNYLSNISPDHQSLFGEIEGLIED-IQITPAQVAEELMKSEDA 447
LAS+YL LF +++ + ++ ++PA++ E ++ + ++
Sbjct: 477 TLASSYL---GVKEHKLFPQVQEIFQNGASLSPAEIGELMIANRNS 349
>TC211748 similar to GB|AAN28905.1|23506091|AY143966 At2g46620/F13A10.15
{Arabidopsis thaliana;} , partial (22%)
Length = 786
Score = 88.6 bits (218), Expect = 6e-18
Identities = 45/104 (43%), Positives = 74/104 (70%), Gaps = 2/104 (1%)
Frame = +2
Query: 346 TLSGLLNFIDGLWSSCGDERIIVFTTNH-KERLDPALLRPGRMDVHIHMSYCSYQGFKLL 404
+LS +LNF+DG+ S CG+ER++VFT N KE +D A+LRPGR+DVHIH C + FK+L
Sbjct: 41 SLSSVLNFMDGIVSCCGEERVMVFTMNETKEEVDQAVLRPGRIDVHIHFPLCDFSTFKIL 220
Query: 405 ASNYLSNISPDHQSLFGEIEGLIE-DIQITPAQVAEELMKSEDA 447
AS+YL +H+ LF ++E + + +++PA++ E ++ + ++
Sbjct: 221 ASSYLG--LKEHK-LFPQVEEVFQTGARLSPAELGEIMISNRNS 343
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.318 0.135 0.387
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,920,184
Number of Sequences: 63676
Number of extensions: 271340
Number of successful extensions: 1822
Number of sequences better than 10.0: 121
Number of HSP's better than 10.0 without gapping: 1751
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1770
length of query: 521
length of database: 12,639,632
effective HSP length: 102
effective length of query: 419
effective length of database: 6,144,680
effective search space: 2574620920
effective search space used: 2574620920
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)
Lotus: description of TM0249.15