BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0248.1
(119 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BM891241 50 1e-07
CA783280 weakly similar to PIR|T01871|T01 RNA-directed DNA polym... 43 2e-05
CF922212 43 2e-05
TC216314 similar to GB|AAP68269.1|31711826|BT008830 At1g70320 {A... 38 6e-04
BU090318 weakly similar to GP|9743345|gb| F21J9.30 {Arabidopsis ... 37 0.001
BM891637 34 0.008
CO978908 33 0.019
BM309783 33 0.025
TC204367 similar to UP|O82161 (O82161) Phi-1 protein, partial (85%) 33 0.025
CD398371 30 0.16
TC222765 28 0.47
TC226982 similar to UP|GAL1_ARATH (Q9SEE5) Galactokinase (Galac... 27 1.4
TC226983 similar to UP|GAL1_ARATH (Q9SEE5) Galactokinase (Galac... 27 1.4
TC229744 similar to UP|Q6H5H5 (Q6H5H5) Emsy N terminus domain-co... 27 1.4
TC224517 27 1.8
TC219250 similar to UP|O82030 (O82030) Histidinol-phosphate amin... 26 2.3
BG155352 26 2.3
TC217102 weakly similar to UP|Q6K1Z7 (Q6K1Z7) Isochorismatase hy... 26 3.0
TC228131 weakly similar to UP|Q71BZ1 (Q71BZ1) Type-B response re... 26 3.0
TC225856 similar to UP|Q6T284 (Q6T284) Predicted protein, partia... 26 3.0
>BM891241
Length = 407
Score = 50.4 bits (119), Expect = 1e-07
Identities = 26/62 (41%), Positives = 37/62 (58%), Gaps = 3/62 (4%)
Frame = -2
Query: 35 GQTHSWYLVPWC--EVSC-PKENGGLGLRSTSLNNIAMLEKLVESLLRDKGKLWGRVLSQ 91
G H +PW EV C PK GGLG++ S NIA+L K + +L D+ +LW R+++
Sbjct: 406 GGDHDHKKIPWVKWEVVCLPKTKGGLGIKDISKFNIALLGKWIWALASDQQQLWARIINS 227
Query: 92 KY 93
KY
Sbjct: 226 KY 221
>CA783280 weakly similar to PIR|T01871|T01 RNA-directed DNA polymerase
homolog T24M8.8 - Arabidopsis thaliana, partial (4%)
Length = 456
Score = 42.7 bits (99), Expect = 2e-05
Identities = 25/93 (26%), Positives = 39/93 (41%)
Frame = +2
Query: 27 RSCIWAKGGQTHSWYLVPWCEVSCPKENGGLGLRSTSLNNIAMLEKLVESLLRDKGKLWG 86
R +W + V W V PK GGLG++ N +L K L + + W
Sbjct: 56 RRFLWGGEADSRKIAWVNWKTVCLPKAKGGLGIKDLRTFNTTLLGKWRWDLFYIQQEPWA 235
Query: 87 RVLSQKYLSNKSVLAGKYKRGDSYIWKGIVSAK 119
+VL KY +++ G DS WK ++ +
Sbjct: 236 KVLQSKYGGWRALEEGSSGSKDSAWWKDLIKTQ 334
>CF922212
Length = 445
Score = 42.7 bits (99), Expect = 2e-05
Identities = 27/86 (31%), Positives = 40/86 (46%)
Frame = -2
Query: 30 IWAKGGQTHSWYLVPWCEVSCPKENGGLGLRSTSLNNIAMLEKLVESLLRDKGKLWGRVL 89
+W G V W V PKE GLG R N A+L K +L +G+L RVL
Sbjct: 393 LWGGGLGQKKIAWVNWDSVCLPKEKEGLGNRDLRKFNYALLGKRRWNLFHHQGELGARVL 214
Query: 90 SQKYLSNKSVLAGKYKRGDSYIWKGI 115
KY +++ + + +S+ W+ I
Sbjct: 213 DSKYKRWRNLDEERRVKSESFWWQEI 136
>TC216314 similar to GB|AAP68269.1|31711826|BT008830 At1g70320 {Arabidopsis
thaliana;} , partial (18%)
Length = 759
Score = 38.1 bits (87), Expect = 6e-04
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Frame = +2
Query: 27 RSCIWAKGGQTHS---WYLVPWCEVSCPKENGGLGLRSTSLNNIAMLEKLVESLLRDKGK 83
R +W G Q H+ W V W ++ PK +GGLG++ S N A+ + + L + +
Sbjct: 113 RQFLWG-GTQHHNRIPW--VKWADICNPKIDGGLGIKDLSNFNAALRGRWIWGLASNHNQ 283
Query: 84 LWGRVLSQ 91
LW R+ Q
Sbjct: 284 LWARLAEQ 307
>BU090318 weakly similar to GP|9743345|gb| F21J9.30 {Arabidopsis thaliana},
partial (1%)
Length = 422
Score = 37.4 bits (85), Expect = 0.001
Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Frame = +3
Query: 45 WCEVSCPKENGGLGLRSTSLNNIAMLEKLVESLLRDKGKLWGRVLSQKYLSNKSVL--AG 102
W + PK++GGLGLR S N ++L K ++ L RV+ KY K +L
Sbjct: 21 WKALCSPKKSGGLGLRLLSHMNKSLLMKST*NMCTKPNDL*VRVVRSKYK*GKDILP*ID 200
Query: 103 KYKRGDSYIWKGIV 116
K G ++ W+GIV
Sbjct: 201 PKKTGTNF-WQGIV 239
>BM891637
Length = 427
Score = 34.3 bits (77), Expect = 0.008
Identities = 21/78 (26%), Positives = 35/78 (43%)
Frame = -1
Query: 35 GQTHSWYLVPWCEVSCPKENGGLGLRSTSLNNIAMLEKLVESLLRDKGKLWGRVLSQKYL 94
G+ +W + W + + GGLG++ + N A+L K + +LW R+L KY
Sbjct: 421 GKKIAW--ISWRQCCASGDVGGLGIKDIKILNNALLIKWKWLMFHQPHQLWNRILISKYK 248
Query: 95 SNKSVLAGKYKRGDSYIW 112
+ + G K S W
Sbjct: 247 GWRGLDQGPQKYYFSPWW 194
>CO978908
Length = 782
Score = 33.1 bits (74), Expect = 0.019
Identities = 13/51 (25%), Positives = 31/51 (60%)
Frame = +1
Query: 65 NNIAMLEKLVESLLRDKGKLWGRVLSQKYLSNKSVLAGKYKRGDSYIWKGI 115
++++ + + +L D+ +LW R+++ KY + +G+ KRG S+ W+ +
Sbjct: 580 DSLSDYDSWIWALASDQQQLWARIINSKYGGWEEFQSGRDKRGCSHWWRDL 732
>BM309783
Length = 433
Score = 32.7 bits (73), Expect = 0.025
Identities = 20/63 (31%), Positives = 31/63 (48%)
Frame = +2
Query: 34 GGQTHSWYLVPWCEVSCPKENGGLGLRSTSLNNIAMLEKLVESLLRDKGKLWGRVLSQKY 93
GG+ H ++V W + P +GG+G+ ++ N A L K+ + G LW VL Y
Sbjct: 20 GGRKH--HVVGWKAMIMP*HSGGVGMCDLTIMNQACLMKIGWAFRMGDGSLWADVLRG*Y 193
Query: 94 LSN 96
N
Sbjct: 194GQN 202
>TC204367 similar to UP|O82161 (O82161) Phi-1 protein, partial (85%)
Length = 1317
Score = 32.7 bits (73), Expect = 0.025
Identities = 13/41 (31%), Positives = 21/41 (50%)
Frame = -1
Query: 20 LEYDKNIRSCIWAKGGQTHSWYLVPWCEVSCPKENGGLGLR 60
+E +K SC W GG T W+ W +++ E G+ +R
Sbjct: 432 IEKEKKQPSCSWDSGGSTSPWFSTTWQQMAGCSETMGMTVR 310
>CD398371
Length = 504
Score = 30.0 bits (66), Expect = 0.16
Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Frame = +2
Query: 8 EKNEFTFKLHLHLEYDKNIRSCIWAK-GGQTHSWYLVPWCEVSC---PKENGGLGLRSTS 63
E ++ + +LHLHL + SCIW K +++ + +P C C K++ L+
Sbjct: 200 EDHQCSQRLHLHLRNLHLLYSCIWMKMSAESYLMFTIPICI*ECY*ESKDHC*QALKFAH 379
Query: 64 LNNIAMLEKLVESLLR 79
L +K+ + +L+
Sbjct: 380 LKGKTEAKKIFKKILK 427
>TC222765
Length = 959
Score = 28.5 bits (62), Expect = 0.47
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +3
Query: 66 NIAMLEKLVESLLRDKGKLWGRVLSQKYLSNKSVL 100
N L KL + L K KLW +VL +KY K ++
Sbjct: 39 NDTFLMKLAQDLCISKDKLWVKVLRRKYDYGKHII 143
>TC226982 similar to UP|GAL1_ARATH (Q9SEE5) Galactokinase (Galactose kinase) ,
complete
Length = 1763
Score = 26.9 bits (58), Expect = 1.4
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -3
Query: 64 LNNIAMLEKLVESLLRDKGKLWGRVL 89
LNN + +LVE+ L+ K KLW L
Sbjct: 1446 LNNALVYSRLVETFLQIKDKLWNYAL 1369
>TC226983 similar to UP|GAL1_ARATH (Q9SEE5) Galactokinase (Galactose kinase)
, partial (27%)
Length = 687
Score = 26.9 bits (58), Expect = 1.4
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -2
Query: 64 LNNIAMLEKLVESLLRDKGKLWGRVL 89
LNN + +LVE+ L+ K KLW L
Sbjct: 350 LNNALVYSRLVETFLQIKDKLWNYAL 273
>TC229744 similar to UP|Q6H5H5 (Q6H5H5) Emsy N terminus domain-containing
protein-like, partial (40%)
Length = 1665
Score = 26.9 bits (58), Expect = 1.4
Identities = 7/18 (38%), Positives = 10/18 (54%)
Frame = +3
Query: 29 CIWAKGGQTHSWYLVPWC 46
C W KG + +W + WC
Sbjct: 645 CSWVKGKEAQTWSNITWC 698
>TC224517
Length = 440
Score = 26.6 bits (57), Expect = 1.8
Identities = 11/27 (40%), Positives = 19/27 (69%)
Frame = -1
Query: 6 LLEKNEFTFKLHLHLEYDKNIRSCIWA 32
L+E+ + +K+H LE ++NIRS +A
Sbjct: 434 LMERLKKIYKVHFSLEVNRNIRSVTYA 354
>TC219250 similar to UP|O82030 (O82030) Histidinol-phosphate aminotransferase
precursor , partial (87%)
Length = 1564
Score = 26.2 bits (56), Expect = 2.3
Identities = 9/22 (40%), Positives = 15/22 (67%)
Frame = -1
Query: 11 EFTFKLHLHLEYDKNIRSCIWA 32
E +L+ HL+Y + ++ CIWA
Sbjct: 898 ELRHQLYFHLDYLEMLKICIWA 833
>BG155352
Length = 481
Score = 26.2 bits (56), Expect = 2.3
Identities = 14/44 (31%), Positives = 23/44 (51%), Gaps = 1/44 (2%)
Frame = -3
Query: 8 EKNEFTFKLHLHLEYDKNIRSCIWAK-GGQTHSWYLVPWCEVSC 50
E ++ + +LHLHL + SCIW K +++ + P C C
Sbjct: 254 EDHQCSQRLHLHLRNLHLLYSCIWMKMSVESNLMFTKPICI*EC 123
>TC217102 weakly similar to UP|Q6K1Z7 (Q6K1Z7) Isochorismatase hydrolase-like
protein, partial (82%)
Length = 1178
Score = 25.8 bits (55), Expect = 3.0
Identities = 8/20 (40%), Positives = 10/20 (50%)
Frame = +1
Query: 27 RSCIWAKGGQTHSWYLVPWC 46
R C W++ H W L WC
Sbjct: 121 RCCKWSRSCGHHKWLLHSWC 180
>TC228131 weakly similar to UP|Q71BZ1 (Q71BZ1) Type-B response regulator,
partial (35%)
Length = 1129
Score = 25.8 bits (55), Expect = 3.0
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -1
Query: 43 VPWCEVSCPKENGGLGLR 60
+P+ V CPK++G LG R
Sbjct: 556 IPFDTVGCPKDDGSLGTR 503
>TC225856 similar to UP|Q6T284 (Q6T284) Predicted protein, partial (29%)
Length = 1899
Score = 25.8 bits (55), Expect = 3.0
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +3
Query: 1 IGSLPLLEKNEFTFKLHLHL 20
+GSLPLLE+ E K H H+
Sbjct: 1704 VGSLPLLERKEGDPKAHHHM 1763
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.318 0.137 0.431
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,819,171
Number of Sequences: 63676
Number of extensions: 104379
Number of successful extensions: 543
Number of sequences better than 10.0: 59
Number of HSP's better than 10.0 without gapping: 541
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 543
length of query: 119
length of database: 12,639,632
effective HSP length: 95
effective length of query: 24
effective length of database: 6,590,412
effective search space: 158169888
effective search space used: 158169888
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)
Lotus: description of TM0248.1