TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0247.1
         (323 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

CF920770                                                               90  2e-18
TC223814                                                               44  1e-04
BE805076 weakly similar to GP|9294121|dbj copia-like retrotransp...    39  0.002
CO979501                                                               30  1.9
TC215225 UP|Q9FVC3 (Q9FVC3) Apyrase GS50 (Fragment), complete          28  4.3
TC229237 similar to UP|Q6TF29 (Q6TF29) Rapid alkalinization fact...    28  5.6
TC229236 similar to UP|Q6TF29 (Q6TF29) Rapid alkalinization fact...    28  5.6
TC221107 similar to UP|Q6NLR6 (Q6NLR6) At4g24230, partial (14%)        28  5.6
BU083551 homologue to GP|7301548|gb|A CG6066-PA {Drosophila mela...    28  7.3
AW569304 similar to GP|19401144|gb KAP-2 {Phaseolus vulgaris}, p...    27  9.6

>CF920770 
          Length = 581

 Score = 89.7 bits (221), Expect = 2e-18
 Identities = 48/172 (27%), Positives = 97/172 (55%), Gaps = 13/172 (7%)
 Frame = -2

Query: 54  RFDTDLWDIVVYG-----YTRLVDEDG--------VKIPREKMNGDQKKKYKDHHRARTI 100
           R D ++W+ +  G         V  DG        ++ PR++ + + +K+ + + +A+ I
Sbjct: 580 RGDLNIWEAIEIGPYIPTTVERVSIDGSSSSESITIEKPRDRWSEEDRKRVQYNLKAKNI 401

Query: 101 LLNAISYEEYEKITDRESAKSIFDSLRMTHEGNEEDKETKALALIKKYGAFKMEPDESIE 160
           + +A+  +EY ++++ +SAK ++D+LR+THEG  + K ++  AL  +Y  F+M  +E+I+
Sbjct: 400 ITSALGMDEYFRVSNCKSAKEMWDTLRLTHEGTTDVKRSRINALTHEYELFRMNTNENIQ 221

Query: 161 AMFSRF*MLIAGIRVLDKCYTTVDHAKKIIRSLPEKWMPLVIALKLSKNLKS 212
           +M  RF  ++  +  L K +   D   K++R L  +W P V A+  S++L +
Sbjct: 220 SMQKRFTHIVNHLAALGKEFQNEDLINKVLRCLSREWQPKVTAISESRDLSN 65


>TC223814 
          Length = 607

 Score = 43.5 bits (101), Expect = 1e-04
 Identities = 31/109 (28%), Positives = 47/109 (42%), Gaps = 2/109 (1%)
 Frame = +1

Query: 36  FDGEKFDYCKDRIENFFLRFDTDLWDIVVYGYTRLVDEDGVKIPREKMNGDQKKKYKDHH 95
           F G+ +D  K RI   F     D+WD+V  G    +DE G + PR     D + KY  + 
Sbjct: 1   FKGQNYDNWKQRIIELFDACHIDMWDVVENGNYIPIDEKGGENPRSAWTKDHQTKYFLYS 180

Query: 96  RARTILLNAISYEEYEKITDRESAKSIFDSLRMTHE--GNEEDKETKAL 142
           +AR       +        D    ++I ++LR   +   N +D  TK L
Sbjct: 181 KAR-------NTRPSNNCLDNSKVQNIMNNLRSLSKT*DNHDDHITKIL 306


>BE805076 weakly similar to GP|9294121|dbj copia-like retrotransposable
           element {Arabidopsis thaliana}, partial (2%)
          Length = 388

 Score = 39.3 bits (90), Expect = 0.002
 Identities = 24/87 (27%), Positives = 44/87 (49%)
 Frame = +1

Query: 34  PVFDGEKFDYCKDRIENFFLRFDTDLWDIVVYGYTRLVDEDGVKIPREKMNGDQKKKYKD 93
           P+F+GE +D+ + ++E +      DLWDIV  G+T   D   +   +EK   + KK  + 
Sbjct: 133 PIFNGENYDFWRVKMETYLS--SQDLWDIVEEGFTIPADTSALNASQEK---ELKKNKQK 297

Query: 94  HHRARTILLNAISYEEYEKITDRESAK 120
           + +    L  A +   + +I   ++AK
Sbjct: 298 NSKTLFTLQQAETDPIFPRIMGAKTAK 378


>CO979501 
          Length = 710

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 22/72 (30%), Positives = 35/72 (48%)
 Frame = -3

Query: 82  KMNGDQKKKYKDHHRARTILLNAISYEEYEKITDRESAKSIFDSLRMTHEGNEEDKETKA 141
           K N   KKK KDH     I +  +  EE++K TDR +     DS  +  +G  +     +
Sbjct: 510 KSNKPDKKKVKDH----VIAMRDVELEEHQKSTDRGAR---VDSCNL--DGVSQGGAGAS 358

Query: 142 LALIKKYGAFKM 153
           ++L K  G+ +M
Sbjct: 357 VSLQKDMGSMRM 322


>TC215225 UP|Q9FVC3 (Q9FVC3) Apyrase GS50 (Fragment), complete
          Length = 1786

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 23/80 (28%), Positives = 37/80 (45%)
 Frame = +3

Query: 14   KNSMTTTTNGDLKDHYSAKPPVFDGEKFDYCKDRIENFFLRFDTDLWDIVVYGYTRLVDE 73
            +N+     N +LKD  S  P V DG+    C D                +VY YT LVD 
Sbjct: 1134 ENAAKVACNTELKDLKSIFPRVKDGDVPYICLD----------------LVYEYTLLVDG 1265

Query: 74   DGVKIPREKMNGDQKKKYKD 93
             G+  P++++   ++ +Y+D
Sbjct: 1266 FGID-PQQEITLVRQVEYQD 1322


>TC229237 similar to UP|Q6TF29 (Q6TF29) Rapid alkalinization factor 1,
           partial (51%)
          Length = 605

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = +2

Query: 105 ISYEEYEKITDRESAKSIFDSLRMTHEGNEEDKETKALALIKKY 148
           +++ E + +T R   KSI + L +T    + +   + LA+ KKY
Sbjct: 107 LNFHEVDVMTKRVCTKSIGECLSLTEPEMDSETNRRVLAMQKKY 238


>TC229236 similar to UP|Q6TF29 (Q6TF29) Rapid alkalinization factor 1,
           partial (51%)
          Length = 631

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = +2

Query: 105 ISYEEYEKITDRESAKSIFDSLRMTHEGNEEDKETKALALIKKY 148
           +++ E + +T R   KSI + L +T    + +   + LA+ KKY
Sbjct: 155 LNFHEVDVMTKRVCTKSIGECLSLTEPEMDSETNRRVLAMQKKY 286


>TC221107 similar to UP|Q6NLR6 (Q6NLR6) At4g24230, partial (14%)
          Length = 498

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 15/54 (27%), Positives = 27/54 (49%)
 Frame = +3

Query: 108 EEYEKITDRESAKSIFDSLRMTHEGNEEDKETKALALIKKYGAFKMEPDESIEA 161
           E+ E+ T  ES K++ + +   +EG +E  ++     +K      +EP   IEA
Sbjct: 42  EKIEEATTVESDKNVEEEIAEGNEGTQELDDSAEKRNVKSVEEISVEPSTEIEA 203


>BU083551 homologue to GP|7301548|gb|A CG6066-PA {Drosophila melanogaster},
           partial (3%)
          Length = 409

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 17/53 (32%), Positives = 25/53 (47%)
 Frame = +1

Query: 88  KKKYKDHHRARTILLNAISYEEYEKITDRESAKSIFDSLRMTHEGNEEDKETK 140
           KKK K  H A  ++ +    EE+ K   R S   +  S    + G EE++E K
Sbjct: 199 KKKKKRVHFAEDVVESCRDGEEFRK---RNSRSKVLKSYYNNNNGEEEEEEAK 348


>AW569304 similar to GP|19401144|gb KAP-2 {Phaseolus vulgaris}, partial (18%)
          Length = 397

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 12/41 (29%), Positives = 21/41 (50%)
 Frame = +2

Query: 117 ESAKSIFDSLRMTHEGNEEDKETKALALIKKYGAFKMEPDE 157
           E    IFD +  +HEG+   K  + L  ++K    + EP++
Sbjct: 89  EMKNKIFDLVEDSHEGDNYPKALECLVALRKGCILEQEPEQ 211


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.343    0.150    0.475 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,135,464
Number of Sequences: 63676
Number of extensions: 118971
Number of successful extensions: 1066
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1060
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1066
length of query: 323
length of database: 12,639,632
effective HSP length: 97
effective length of query: 226
effective length of database: 6,463,060
effective search space: 1460651560
effective search space used: 1460651560
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.5 bits)
S2: 59 (27.3 bits)