BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0243.9
(310 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC204369 similar to GB|BAB09857.1|9759402|AB008268 phi-1-like pr... 33 0.22
BU965237 32 0.48
CF922783 30 1.1
TC214154 weakly similar to UP|Q7XAK4 (Q7XAK4) GID2 protein, part... 30 1.4
TC222280 similar to UP|Q9SHQ5 (Q9SHQ5) F1K23.7, partial (18%) 30 1.4
TC213789 similar to GB|AAK73969.1|15010620|AY045611 AT4g08960/T3... 30 1.8
TC215844 UP|Q9SP48 (Q9SP48) Homeodomain-leucine zipper protein 5... 30 1.8
BQ628716 GP|23093168|g CG4059-PB {Drosophila melanogaster}, part... 30 1.8
TC221495 similar to UP|Q8W3M8 (Q8W3M8) 6b-interacting protein 1,... 29 2.4
TC210656 similar to UP|Q944L5 (Q944L5) At1g26740/T24P13_11, part... 29 2.4
TC210865 29 3.1
TC219515 similar to UP|Q9SY60 (Q9SY60) F14N23.6, partial (15%) 29 3.1
TC224972 similar to UP|Q9M084 (Q9M084) Aspartate--tRNA ligase-li... 29 3.1
TC232703 similar to UP|Q93ZJ9 (Q93ZJ9) At1g80000/F19K16_3, parti... 28 4.1
TC220791 similar to PIR|A02662|GACH protamine - chicken {Gallus ... 28 4.1
TC217724 homologue to UP|EFTM_ARATH (Q9ZT91) Elongation factor T... 28 4.1
TC215695 similar to UP|P93700 (P93700) CPRD14 protein , complete 28 4.1
TC208000 similar to UP|HS12_MEDSA (P27880) 18.2 kDa class I heat... 28 4.1
TC231538 weakly similar to UP|Q6PJX0 (Q6PJX0) MADP-1 protein (Fr... 28 5.3
TC220979 similar to UP|Q7X9P6 (Q7X9P6) PIN1-like protein, partia... 28 5.3
>TC204369 similar to GB|BAB09857.1|9759402|AB008268 phi-1-like protein
{Arabidopsis thaliana;} , partial (75%)
Length = 1276
Score = 32.7 bits (73), Expect = 0.22
Identities = 32/100 (32%), Positives = 40/100 (40%), Gaps = 6/100 (6%)
Frame = +2
Query: 211 SRGVGRSEELQI-WCESK--GRVPDLVRQWLYGSDPALNGEEQWWRNLGVSGSVSGSLLH 267
SRG G ELQ WCE K R D+ DP L + WR
Sbjct: 881 SRG*GNRGELQCAWCEWKEVSRASDVGPADFDMQDPRL--KTATWRG------------- 1015
Query: 268 LLHRLCFSLSESGAWLRKEGCD---GDGFESRLELFVVFV 304
C + + G W RK+G D GDGF S +F+ F+
Sbjct: 1016-----CVMVVDIGRWERKQGMDNRGGDGFGSDFGVFLNFL 1120
>BU965237
Length = 451
Score = 31.6 bits (70), Expect = 0.48
Identities = 18/46 (39%), Positives = 25/46 (54%)
Frame = -2
Query: 176 FPFSFFSLPLSPPLTSTISSSTGTISSSSTTKKKTSRGVGRSEELQ 221
FPFSFF+LP + L S GT+ S+ + R G+S +LQ
Sbjct: 372 FPFSFFTLPPAIELNPNARSCKGTVCFCSSYQSNNQRR-GKSVQLQ 238
>CF922783
Length = 668
Score = 30.4 bits (67), Expect = 1.1
Identities = 20/61 (32%), Positives = 29/61 (46%)
Frame = +3
Query: 173 FRLFPFSFFSLPLSPPLTSTISSSTGTISSSSTTKKKTSRGVGRSEELQIWCESKGRVPD 232
FR+ +F+L L PPL I SS+ +TS + + +IW E KGR D
Sbjct: 378 FRMCVSHYFNLNLKPPL----------IFSSTVQVARTSLVINDTHMFRIWPEMKGRHVD 527
Query: 233 L 233
+
Sbjct: 528 V 530
>TC214154 weakly similar to UP|Q7XAK4 (Q7XAK4) GID2 protein, partial (22%)
Length = 905
Score = 30.0 bits (66), Expect = 1.4
Identities = 22/60 (36%), Positives = 30/60 (49%)
Frame = +2
Query: 163 GAFQTLHSGYFRLFPFSFFSLPLSPPLTSTISSSTGTISSSSTTKKKTSRGVGRSEELQI 222
G F+ LH+ Y PLS P + SSS+ T SSSS+ T V RS+ L++
Sbjct: 413 GGFRRLHALYL---------FPLSKPQQTPSSSSSSTSSSSSSAWGPTIPQVIRSKPLRL 565
>TC222280 similar to UP|Q9SHQ5 (Q9SHQ5) F1K23.7, partial (18%)
Length = 769
Score = 30.0 bits (66), Expect = 1.4
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Frame = +3
Query: 183 LPLSPPLTSTISSSTGTISSSSTTKKKTSRGVGRSEELQIWCESKGRVPD--LVRQWLY 239
L +SP SS +G +S+S +TKKKT + + + +S+ P+ L ++W Y
Sbjct: 441 LQISPSQAPKYSSRSGVVSTSESTKKKTDQ-KDALMQCSVVSQSQSSSPEIFLPKEWTY 614
>TC213789 similar to GB|AAK73969.1|15010620|AY045611 AT4g08960/T3H13_2
{Arabidopsis thaliana;} , partial (34%)
Length = 447
Score = 29.6 bits (65), Expect = 1.8
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = -1
Query: 5 GGVWDSVTGRGWRAAQRKVVSG 26
GGVW ++ R WR +R+VV+G
Sbjct: 66 GGVWSAIRVRVWRMERREVVAG 1
>TC215844 UP|Q9SP48 (Q9SP48) Homeodomain-leucine zipper protein 56, complete
Length = 1482
Score = 29.6 bits (65), Expect = 1.8
Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 5/32 (15%)
Frame = -3
Query: 186 SPPLTSTISSSTGTISS-----SSTTKKKTSR 212
+PP T SSS+GT+S SSTTKK T++
Sbjct: 946 APPSLRTASSSSGTVSGTGNSCSSTTKKATTK 851
>BQ628716 GP|23093168|g CG4059-PB {Drosophila melanogaster}, partial (1%)
Length = 374
Score = 29.6 bits (65), Expect = 1.8
Identities = 18/51 (35%), Positives = 25/51 (48%)
Frame = +1
Query: 177 PFSFFSLPLSPPLTSTISSSTGTISSSSTTKKKTSRGVGRSEELQIWCESK 227
P++ S +PP ++T SSS I SS TK K R + + I C K
Sbjct: 94 PYNIVSYSCTPPASTTSSSSN*LIRSSGETKLKLIRKLKVNVNEDIMC*QK 246
>TC221495 similar to UP|Q8W3M8 (Q8W3M8) 6b-interacting protein 1, partial
(24%)
Length = 484
Score = 29.3 bits (64), Expect = 2.4
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = -3
Query: 4 GGGVWDSVTGRGWRAAQRKVVSGVWWVGFG 33
GGG S G G A + V +GVWW GFG
Sbjct: 164 GGGGVTSACG-GAPAMESMVEAGVWWFGFG 78
>TC210656 similar to UP|Q944L5 (Q944L5) At1g26740/T24P13_11, partial (15%)
Length = 414
Score = 29.3 bits (64), Expect = 2.4
Identities = 14/22 (63%), Positives = 17/22 (76%)
Frame = +1
Query: 182 SLPLSPPLTSTISSSTGTISSS 203
SLP SPPL++TI S+ T SSS
Sbjct: 289 SLPQSPPLSATIDFSSPTFSSS 354
>TC210865
Length = 1111
Score = 28.9 bits (63), Expect = 3.1
Identities = 14/27 (51%), Positives = 18/27 (65%)
Frame = -1
Query: 189 LTSTISSSTGTISSSSTTKKKTSRGVG 215
LTS ++ S T+SSS T+K TS G G
Sbjct: 211 LTSELAKSLATLSSSPTSKLATSLGTG 131
>TC219515 similar to UP|Q9SY60 (Q9SY60) F14N23.6, partial (15%)
Length = 829
Score = 28.9 bits (63), Expect = 3.1
Identities = 11/18 (61%), Positives = 16/18 (88%)
Frame = +1
Query: 269 LHRLCFSLSESGAWLRKE 286
LH L F+L+ESG+W+R+E
Sbjct: 700 LHYLKFALAESGSWIRQE 753
>TC224972 similar to UP|Q9M084 (Q9M084) Aspartate--tRNA ligase-like protein,
partial (49%)
Length = 1255
Score = 28.9 bits (63), Expect = 3.1
Identities = 18/51 (35%), Positives = 27/51 (52%)
Frame = -1
Query: 94 VQGKVEEADSRARRSGRSSRWFASHQFHIAVGDAIKDVMVLEGERRRGGGR 144
+Q E +R + R HQ H+AV A + V++++GE RGGGR
Sbjct: 340 LQRAAERLHARPLANVRRRLGLQLHQRHVAVVPA-EGVLLVDGEVGRGGGR 191
>TC232703 similar to UP|Q93ZJ9 (Q93ZJ9) At1g80000/F19K16_3, partial (10%)
Length = 527
Score = 28.5 bits (62), Expect = 4.1
Identities = 18/47 (38%), Positives = 25/47 (52%), Gaps = 8/47 (17%)
Frame = -1
Query: 179 SFFSLPLSPP--------LTSTISSSTGTISSSSTTKKKTSRGVGRS 217
SF ++PL+PP +S SSST + SSSST +S+ S
Sbjct: 149 SFTTVPLAPPSYSCSLLSSSSKSSSSTSSSSSSSTASSSSSKSSSSS 9
>TC220791 similar to PIR|A02662|GACH protamine - chicken {Gallus gallus;} ,
partial (29%)
Length = 677
Score = 28.5 bits (62), Expect = 4.1
Identities = 18/48 (37%), Positives = 28/48 (57%), Gaps = 3/48 (6%)
Frame = +3
Query: 167 TLHSGYFRLFP-FSFFSLPL--SPPLTSTISSSTGTISSSSTTKKKTS 211
T HS + +P F FFS+P+ + P+ ST+SS S+ + +KTS
Sbjct: 126 TFHSSQRQRWPLFPFFSMPIIITCPIFSTMSSQ*AIAVSNIASNRKTS 269
>TC217724 homologue to UP|EFTM_ARATH (Q9ZT91) Elongation factor Tu,
mitochondrial precursor, partial (87%)
Length = 1679
Score = 28.5 bits (62), Expect = 4.1
Identities = 17/38 (44%), Positives = 23/38 (59%), Gaps = 6/38 (15%)
Frame = +2
Query: 174 RLFPF------SFFSLPLSPPLTSTISSSTGTISSSST 205
RLFP SF PLSPP+ + S+S+ + SSSS+
Sbjct: 143 RLFPLTSQIHSSFTRSPLSPPVFTNDSTSSSSSSSSSS 256
>TC215695 similar to UP|P93700 (P93700) CPRD14 protein , complete
Length = 1414
Score = 28.5 bits (62), Expect = 4.1
Identities = 24/99 (24%), Positives = 31/99 (31%)
Frame = +1
Query: 157 EKGVLEGAFQTLHSGYFRLFPFSFFSLPLSPPLTSTISSSTGTISSSSTTKKKTSRGVGR 216
E+G Q H+ + PF L T + S R V
Sbjct: 379 EEGSFNSVVQGCHAVFHTASPFYHNVKDPQAELLDPALKGTLNVLKSCVNLPTLERVVLT 558
Query: 217 SEELQIWCESKGRVPDLVRQWLYGSDPALNGEEQWWRNL 255
S + K R PD+V + SDP E Q W L
Sbjct: 559 SSVAAVAYNGKPRTPDVVVDETWFSDPGFCRESQMWYTL 675
>TC208000 similar to UP|HS12_MEDSA (P27880) 18.2 kDa class I heat shock
protein, partial (92%)
Length = 666
Score = 28.5 bits (62), Expect = 4.1
Identities = 18/39 (46%), Positives = 21/39 (53%)
Frame = -3
Query: 165 FQTLHSGYFRLFPFSFFSLPLSPPLTSTISSSTGTISSS 203
F L S L F SL LSP + ST+ SST T +SS
Sbjct: 370 FPVLLSTRCHLSSFCSCSLVLSPLICSTLPSSTSTFTSS 254
>TC231538 weakly similar to UP|Q6PJX0 (Q6PJX0) MADP-1 protein (Fragment),
partial (36%)
Length = 817
Score = 28.1 bits (61), Expect = 5.3
Identities = 20/41 (48%), Positives = 24/41 (57%), Gaps = 6/41 (14%)
Frame = +3
Query: 182 SLPLSPPLT-----STISSSTGT-ISSSSTTKKKTSRGVGR 216
S P SPP T S+ S+ST T I++SS K TSR GR
Sbjct: 468 SPPPSPPTTAAPPSSSASASTATPIAASSAESKGTSRTTGR 590
>TC220979 similar to UP|Q7X9P6 (Q7X9P6) PIN1-like protein, partial (25%)
Length = 660
Score = 28.1 bits (61), Expect = 5.3
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = -1
Query: 176 FPFSFFSLPLSPPLTSTISSSTGTISS 202
F FSF S SPP T ++SST + +S
Sbjct: 330 FSFSFSSSTCSPPFTGNLNSSTSSPAS 250
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.323 0.139 0.450
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,876,980
Number of Sequences: 63676
Number of extensions: 310898
Number of successful extensions: 2549
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 2405
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2491
length of query: 310
length of database: 12,639,632
effective HSP length: 97
effective length of query: 213
effective length of database: 6,463,060
effective search space: 1376631780
effective search space used: 1376631780
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)
Lotus: description of TM0243.9