BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0240.1
(1666 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
NP595172 polyprotein [Glycine max] 201 2e-51
CF922488 198 1e-50
NP395547 reverse transcriptase [Glycine max] 157 3e-38
TC223727 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, part... 154 4e-37
NP395548 reverse transcriptase [Glycine max] 149 8e-36
TC233837 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, part... 142 9e-34
NP334778 reverse transcriptase [Glycine max] 134 3e-31
BI316922 101 2e-21
TC212032 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, part... 76 4e-20
AW184779 59 8e-17
BI321666 76 1e-13
TC211067 similar to UP|Q9LQH2 (Q9LQH2) F15O4.13, partial (9%) 57 1e-10
BE802896 65 2e-10
BQ628592 64 4e-10
BG725601 similar to PIR|H86337|H86 protein F5M15.26 [imported] -... 60 8e-09
BI317507 58 3e-08
TC220664 weakly similar to UP|Q84TE0 (Q84TE0) At5g51080, partial... 58 4e-08
BI498328 53 1e-06
TC219643 weakly similar to UP|Q6WAY7 (Q6WAY7) Gag/pol polyprotei... 53 1e-06
AW570005 49 1e-05
>NP595172 polyprotein [Glycine max]
Length = 4659
Score = 201 bits (512), Expect = 2e-51
Identities = 129/381 (33%), Positives = 198/381 (51%)
Frame = +1
Query: 800 PQSRIGGIELPIKEDKKPVKQLPRRFHPDVLVKIKEEIERLLRCKFIRTARYVDWLANVV 859
P R +P+K+ PVK P R+ +I++ I+ +L I+ + L ++
Sbjct: 1738 PPQREQDHAIPLKQGSGPVKVRPYRYPHTQKDQIEKMIQEMLVQGIIQPSNSPFSLP-IL 1914
Query: 860 PVIKKNGKMRVCIDFRDLNAATPKDEYHMPIAEMMVDSAAGHEYLSLLDGYSGYNQIFIA 919
V KK+G R C D+R LNA T KD + MP + ++D G +Y S LD SGY+QI +
Sbjct: 1915 LVKKKDGSWRFCTDYRALNAITVKDSFPMPTVDELLDELHGAQYFSKLDLRSGYHQILVQ 2094
Query: 920 EEDVSKTAFRCPGALGTYEWVVMPFGLKNAGATYQRVMNTIFHDFIETFMQVYIDDIVVK 979
ED KTAFR G YEW+VMPFGL NA AT+Q +MN IF + F+ V+ DDI++
Sbjct: 2095 PEDREKTAFRTHH--GHYEWLVMPFGLTNAPATFQCLMNKIFQFALRKFVLVFFDDILIY 2268
Query: 980 SPSRDDQLLHLRKSFERMRKYGLKMNPLKCAFGVIAGDFLGFVVHKKGIEINKNKAKAIL 1039
S S D L HL + ++++ L KC+FG D+LG V G+ + K +A+L
Sbjct: 2269 SASWKDHLKHLESVLQTLKQHQLFARLSKCSFGDTEVDYLGHKVSGLGVSMENTKVQAVL 2448
Query: 1040 DTNPPTSKKQLQSLLGKINFLRRFIVNLSEKTKSFSPLLRLKKEDTFRWEAEHQKAFDEL 1099
D P + KQL+ LG + RRFI + + PL L ++D+F W E + AF +L
Sbjct: 2449 DWPTPNNVKQLRGFLGLTGYYRRFIKSYANIA---GPLTDLLQKDSFLWNNEAEAAFVKL 2619
Query: 1100 KAYLSSPPVMAPPIGGKPMKLYISATNGTIGSMLAQEDENSKERAIFYLSRVLNDAETRY 1159
K ++ PV++ P +P L A+ +G++L Q I Y S+ L +
Sbjct: 2620 KKAMTEAPVLSLPDFSQPFILETDASGIGVGAVLGQNG-----HPIAYFSKKLAPRMQKQ 2784
Query: 1160 TMIEKLCLCLYFSCVKLKYYI 1180
+ + L + + K ++Y+
Sbjct: 2785 SAYTRELLAITEALSKFRHYL 2847
Score = 74.7 bits (182), Expect = 3e-13
Identities = 57/195 (29%), Positives = 87/195 (44%), Gaps = 4/195 (2%)
Frame = +1
Query: 1474 HDGLCGAHQAGIKMKWILFRQGMYWPTIMKDCMEYAKGCQDCQRHAGIQHVPASELHSII 1533
H G H AGI + YWP + +D Y + C CQ+ +PA L +
Sbjct: 3235 HSSPIGGH-AGITRTLARLKAQFYWPKMQEDVKAYIQKCLICQQAKSNNTLPAGLLQPL- 3408
Query: 1534 KPWPFRGW---ALDLIGEINPCSSRQHKYIIVAIDYFTKWVEAIPLQ-NVTQDTVIDFIQ 1589
P P + W A+D I + +S I+V ID TK+ IPL+ + V +
Sbjct: 3409 -PIPQQVWEDVAMDFITGLP--NSFGLSVIMVVIDRLTKYAHFIPLKADYNSKVVAEAFM 3579
Query: 1590 NHIVYRFGLPESLTTDQGTVFVGQKVASFTESWGIKLLTSTPYYAQANGQVEAANKTLIS 1649
+HIV G+P S+ +D+ VF + G L S+ Y+ Q++GQ E NK L
Sbjct: 3580 SHIVKLHGIPRSIVSDRDRVFTSTFWQHLFKLQGTTLAMSSAYHPQSDGQSEVLNKCLEM 3759
Query: 1650 LIKNILVENLKDGIK 1664
++ E+ K +K
Sbjct: 3760 YLRCFTYEHPKGWVK 3804
>CF922488
Length = 741
Score = 198 bits (504), Expect = 1e-50
Identities = 103/249 (41%), Positives = 159/249 (63%)
Frame = +3
Query: 861 VIKKNGKMRVCIDFRDLNAATPKDEYHMPIAEMMVDSAAGHEYLSLLDGYSGYNQIFIAE 920
V+K++GK+ +C+D+RDLN A+PKD++ +P ++VD+ S +DG+SGYNQI IA
Sbjct: 3 VLKEDGKV*MCVDYRDLN*ASPKDKFPLPHINVLVDNTTSFSQFSFMDGFSGYNQIKIAP 182
Query: 921 EDVSKTAFRCPGALGTYEWVVMPFGLKNAGATYQRVMNTIFHDFIETFMQVYIDDIVVKS 980
ED+ KT F GT+ + M FGLKN GATYQR M +F D + ++VY+DD++VKS
Sbjct: 183 EDMEKTTFIT--LWGTFCYKAMSFGLKNVGATYQRAMVALF*DMMHKEIEVYMDDMIVKS 356
Query: 981 PSRDDQLLHLRKSFERMRKYGLKMNPLKCAFGVIAGDFLGFVVHKKGIEINKNKAKAILD 1040
+ ++ L++LRK F R+RKY L++NP KC F V + L F+ +GIE++ NK K IL+
Sbjct: 357 RTEEEHLVNLRKLFRRLRKYRLRLNPAKCMFEVKSRKLLDFIDS*RGIEVDSNKVKVILE 536
Query: 1041 TNPPTSKKQLQSLLGKINFLRRFIVNLSEKTKSFSPLLRLKKEDTFRWEAEHQKAFDELK 1100
P ++KQ+Q LG++N++ RFI L + + L K +W+ + AF+ +K
Sbjct: 537 MAKPHTEKQVQGFLGRLNYIVRFIS*LIATCEPL--FILLCKNQFVKWDHDC*VAFERIK 710
Query: 1101 AYLSSPPVM 1109
L +P V+
Sbjct: 711 QCLINPHVL 737
>NP395547 reverse transcriptase [Glycine max]
Length = 762
Score = 157 bits (398), Expect = 3e-38
Identities = 94/255 (36%), Positives = 131/255 (50%), Gaps = 18/255 (7%)
Frame = +1
Query: 833 IKEEIERLLRCKFIRTARYVDWLANVVPVIKKNG------------------KMRVCIDF 874
+++E+ +LL I W++ V V KK G + R+CID+
Sbjct: 1 VRKEVFKLLEAGLIYPISDSSWVSPVQVVPKKGGMTVVKNDRNELIPTRRVTRWRMCIDY 180
Query: 875 RDLNAATPKDEYHMPIAEMMVDSAAGHEYLSLLDGYSGYNQIFIAEEDVSKTAFRCPGAL 934
R LN AT KD Y +P + M+ A + LDGYSGYNQI + +D KTAF CP ++
Sbjct: 181 RKLNEATRKDHYPLPFMDQMLKRLARQSFYRFLDGYSGYNQIAVDPQDQEKTAFTCPFSV 360
Query: 935 GTYEWVVMPFGLKNAGATYQRVMNTIFHDFIETFMQVYIDDIVVKSPSRDDQLLHLRKSF 994
Y MPFGL NA T+QR M IF D +E ++V++DD S + L +L K
Sbjct: 361 FAYRR--MPFGLCNASTTFQRCMMAIFDDMVEKCIEVFMDDFSFFGASFGNCLANLEKVL 534
Query: 995 ERMRKYGLKMNPLKCAFGVIAGDFLGFVVHKKGIEINKNKAKAILDTNPPTSKKQLQSLL 1054
+R K L +N KC F V G LG + K+GIE+ K K I PP + K + S L
Sbjct: 535 QRCEKSNLVLNWEKCHFMVQEGIVLGHKISKRGIEVVKEKLDVIDKLPPPVNVKGIHSFL 714
Query: 1055 GKINFLRRFIVNLSE 1069
G + F RRFI + ++
Sbjct: 715 GHVGFYRRFIKDFTK 759
>TC223727 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, partial (9%)
Length = 843
Score = 154 bits (388), Expect = 4e-37
Identities = 80/223 (35%), Positives = 116/223 (51%)
Frame = +1
Query: 1421 DYLQNPVGTTDRKTKYRAMSYVIMGNELFKKNVDGTLLKCLSDDDALIAISAVHDGLCGA 1480
+YL R + A + + G+ L+K+N D L+C+ +A I VH+G G
Sbjct: 175 EYLPEIADNDKRTLRRLAAGFFMSGSILYKRNHDMKPLRCVDAREANHMIEEVHEGSFGT 354
Query: 1481 HQAGIKMKWILFRQGMYWPTIMKDCMEYAKGCQDCQRHAGIQHVPASELHSIIKPWPFRG 1540
H G M + R G YW T+ DC + + C CQ A + P L+ + PWPF
Sbjct: 355 HANGHAMARKILRAGYYWLTMESDCCVHVRKCHKCQAFADNVNAPPHPLNVMSSPWPFSM 534
Query: 1541 WALDLIGEINPCSSRQHKYIIVAIDYFTKWVEAIPLQNVTQDTVIDFIQNHIVYRFGLPE 1600
W +D+IG I P +S H++I+VAIDYFTKWVEA +V + V+ FI+ I+ R+GLP
Sbjct: 535 WGIDVIGAIEPKASNGHRFILVAIDYFTKWVEAASYTDVMRGVVVRFIKKEIICRYGLPR 714
Query: 1601 SLTTDQGTVFVGQKVASFTESWGIKLLTSTPYYAQANGQVEAA 1643
+ TD GT + + E + I+ TPY + N VE A
Sbjct: 715 KIITDNGTNLNNKMMGEICEEFKIQHHNPTPYRPKMN*AVEVA 843
>NP395548 reverse transcriptase [Glycine max]
Length = 762
Score = 149 bits (377), Expect = 8e-36
Identities = 88/255 (34%), Positives = 132/255 (51%), Gaps = 18/255 (7%)
Frame = +1
Query: 833 IKEEIERLLRCKFIRTARYVDWLANVVPVIKKNG------------------KMRVCIDF 874
+++E+ +LL I W++ V+ V KK G ++CID+
Sbjct: 1 VRKEVLKLLEVGLIYPISDSAWVSPVLVVSKKEGMTVIRNEKNDLIPTRTVTSWKLCIDY 180
Query: 875 RDLNAATPKDEYHMPIAEMMVDSAAGHEYLSLLDGYSGYNQIFIAEEDVSKTAFRCPGAL 934
R LN AT KD + +P + M++ AGH Y LD Y GYNQI + +D K AF CP
Sbjct: 181 RKLNEATRKDHFPLPFMDQMLERLAGHAYYCFLDAYFGYNQIVVDPKDQEKMAFTCP--F 354
Query: 935 GTYEWVVMPFGLKNAGATYQRVMNTIFHDFIETFMQVYIDDIVVKSPSRDDQLLHLRKSF 994
G + + +PFGL NA T+Q M IF D +E ++V++DD V PS + L L
Sbjct: 355 GVFAYRRIPFGLCNAPTTFQMCMLAIFADIVEKSIEVFMDDFSVFVPSLESCLKKLEMVL 534
Query: 995 ERMRKYGLKMNPLKCAFGVIAGDFLGFVVHKKGIEINKNKAKAILDTNPPTSKKQLQSLL 1054
+R + L +N KC F V G LG + +GIE+++ K I PP++ K ++S L
Sbjct: 535 QRCVETNLVLNWEKCHFMVREGIVLGHKISTRGIEVDQTKIDVIEKLPPPSNVKGIRSFL 714
Query: 1055 GKINFLRRFIVNLSE 1069
G+ F RRFI + ++
Sbjct: 715 GQARFYRRFIKDFTK 759
>TC233837 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, partial (6%)
Length = 402
Score = 142 bits (359), Expect = 9e-34
Identities = 70/134 (52%), Positives = 94/134 (69%)
Frame = +2
Query: 905 SLLDGYSGYNQIFIAEEDVSKTAFRCPGALGTYEWVVMPFGLKNAGATYQRVMNTIFHDF 964
S +DG+SGYNQI +A EDV KT F GT+ + VM FGLKN GATYQR M +FHD
Sbjct: 5 SFMDGFSGYNQI*MAREDVEKTTFVT--LWGTFSYRVMAFGLKNTGATYQRAMVALFHDM 178
Query: 965 IETFMQVYIDDIVVKSPSRDDQLLHLRKSFERMRKYGLKMNPLKCAFGVIAGDFLGFVVH 1024
+ ++VY+DD++ KS + + L++L K F R++KY LK+NP KC FGV +G LGF+V
Sbjct: 179 MHKEIEVYVDDMIAKSRTETEHLVNLCKLFGRLQKYQLKLNPTKCTFGVKSGKLLGFIVS 358
Query: 1025 KKGIEINKNKAKAI 1038
+KGIEI+ K KA+
Sbjct: 359 QKGIEIDPEKVKAL 400
>NP334778 reverse transcriptase [Glycine max]
Length = 431
Score = 134 bits (338), Expect = 3e-31
Identities = 62/145 (42%), Positives = 97/145 (66%)
Frame = +3
Query: 869 RVCIDFRDLNAATPKDEYHMPIAEMMVDSAAGHEYLSLLDGYSGYNQIFIAEEDVSKTAF 928
R+C+D+RDLN A+PKD + +P ++++ + A S +DG+SGYNQI +A ED+ KT F
Sbjct: 3 RMCVDYRDLNRASPKDNFPLPHIDILMANMASFALFSFMDGFSGYNQIKMAPEDMEKTTF 182
Query: 929 RCPGALGTYEWVVMPFGLKNAGATYQRVMNTIFHDFIETFMQVYIDDIVVKSPSRDDQLL 988
GT+ + VM FGLKN GATY R M +F D + ++ Y+D+++ KS ++ L+
Sbjct: 183 IT--LWGTFCYKVMSFGLKNFGATYHRAMVALFQDMMHKEIEAYVDEMIAKSRMEEEHLV 356
Query: 989 HLRKSFERMRKYGLKMNPLKCAFGV 1013
+L+ F ++RKY L++NP KC FG+
Sbjct: 357 NLQNLFGQLRKYRLRLNPRKCVFGL 431
>BI316922
Length = 405
Score = 101 bits (252), Expect = 2e-21
Identities = 51/133 (38%), Positives = 75/133 (56%)
Frame = +3
Query: 1473 VHDGLCGAHQAGIKMKWILFRQGMYWPTIMKDCMEYAKGCQDCQRHAGIQHVPASELHSI 1532
+H G+CG H M + R G Y T+ K C EY K C++C + I H+ ELH+I
Sbjct: 6 MHRGICGMHSKSQLMTTRVLRVGYY**TMRKYCTEYVKKCEEC*KFGNISHLLVEELHNI 185
Query: 1533 IKPWPFRGWALDLIGEINPCSSRQHKYIIVAIDYFTKWVEAIPLQNVTQDTVIDFIQNHI 1592
+ PWPF +D++ P S RQ KY++V ID FTKW+E + ++ V F+ +I
Sbjct: 186 VAPWPFAI*GVDILRPF-PLSKRQVKYLLVGIDQFTKWIETEHIAIISIANVRKFV*RNI 362
Query: 1593 VYRFGLPESLTTD 1605
V FG+P +L +D
Sbjct: 363 VC*FGIPNTLISD 401
>TC212032 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, partial (3%)
Length = 803
Score = 75.9 bits (185), Expect(2) = 4e-20
Identities = 56/187 (29%), Positives = 87/187 (45%), Gaps = 6/187 (3%)
Frame = +2
Query: 1318 VKGDSELVIKQLTKEYKCISENLAKYYTKANNLLAKFDDARLGHVSRIDNQEANELAQIA 1377
V GDS LVI QL E + NL Y L FD+ HV+ +NQ A+ LA +
Sbjct: 245 VYGDSALVIHQLRGECETRDPNLIPYQAYIKELAGFFDEISFHHVA*EENQMADALATLV 424
Query: 1378 SGYMVDKYRLKELIEVKEKLNPSDLNVLVIDNMAPKDWRKPIVDYLQN---PVGTTD--- 1431
S + + + IE + + P+ LV + K W I Y+++ P+ +D
Sbjct: 425 SMFQLTPHGDLPYIEFRCRGRPAHC-CLVEEERDGKPWYFDIKRYVESKEYPLEASDNDK 601
Query: 1432 RKTKYRAMSYVIMGNELFKKNVDGTLLKCLSDDDALIAISAVHDGLCGAHQAGIKMKWIL 1491
R+ + A + + G+ L+K+N D LL C++ + + VH+G G H G M +
Sbjct: 602 RRKRRLAAGFFMSGSILYKRNHDMVLLHCVNGKEVENMLGEVHEGSFGTHSNGHAMARKI 781
Query: 1492 FRQGMYW 1498
R G YW
Sbjct: 782 LRAGYYW 802
Score = 42.4 bits (98), Expect(2) = 4e-20
Identities = 20/47 (42%), Positives = 28/47 (59%)
Frame = +1
Query: 1254 WKLFFDGSSHKNGTGIGMFIVSPGGTPTKFKFRIKKKCSNNEAEYEA 1300
W ++FD +S+ G G+G +VSP F R+ C+NN AEYEA
Sbjct: 52 WIVWFDRASNVLGHGVGAILVSPDNQCIPFTTRLGFDCTNNMAEYEA 192
>AW184779
Length = 432
Score = 58.5 bits (140), Expect(2) = 8e-17
Identities = 25/45 (55%), Positives = 33/45 (72%)
Frame = +3
Query: 1541 WALDLIGEINPCSSRQHKYIIVAIDYFTKWVEAIPLQNVTQDTVI 1585
W +D+IG I P +S H +I+VAIDYFTKWVEA+ +VT+ VI
Sbjct: 294 WGIDVIGAIEPKASNGHHFILVAIDYFTKWVEAVSYASVTRSVVI 428
Score = 48.5 bits (114), Expect(2) = 8e-17
Identities = 25/71 (35%), Positives = 35/71 (49%)
Frame = +1
Query: 1446 NELFKKNVDGTLLKCLSDDDALIAISAVHDGLCGAHQAGIKMKWILFRQGMYWPTIMKDC 1505
N L+K+N D LL+C+ +A + VH+G G H M + R G YW T+ DC
Sbjct: 10 NILYKRNHDMVLLRCVDAREAEQMLVEVHEGSFGTHANIHAMAQKILRVGYYWLTMESDC 189
Query: 1506 MEYAKGCQDCQ 1516
+ C CQ
Sbjct: 190 CIHVWKCHKCQ 222
>BI321666
Length = 430
Score = 76.3 bits (186), Expect = 1e-13
Identities = 41/122 (33%), Positives = 61/122 (49%)
Frame = +2
Query: 1497 YWPTIMKDCMEYAKGCQDCQRHAGIQHVPASELHSIIKPWPFRGWALDLIGEINPCSSRQ 1556
Y P+I KD +A+ C CQR + LH+I++ F W +D +G P S +
Sbjct: 32 YLPSIFKDAYVHAQSCNKCQRTRSVSKRNELPLHTILEVEIFDYWGIDFVGPFPPSFSNE 211
Query: 1557 HKYIIVAIDYFTKWVEAIPLQNVTQDTVIDFIQNHIVYRFGLPESLTTDQGTVFVGQKVA 1616
YI+V +DY +KWVEA+ Q VI F++ I R G+P L + G+ +A
Sbjct: 212 --YILVVVDYVSKWVEAVACQKSDAKIVIKFLKKQIFSRLGVPWVLIDNGGSHLCNA*LA 385
Query: 1617 SF 1618
F
Sbjct: 386 RF 391
>TC211067 similar to UP|Q9LQH2 (Q9LQH2) F15O4.13, partial (9%)
Length = 589
Score = 57.4 bits (137), Expect(2) = 1e-10
Identities = 45/169 (26%), Positives = 76/169 (44%), Gaps = 2/169 (1%)
Frame = +1
Query: 1044 PTSKK--QLQSLLGKINFLRRFIVNLSEKTKSFSPLLRLKKEDTFRWEAEHQKAFDELKA 1101
PT K ++S G +F RRF+ N S + L+ KK F W + ++AF LK
Sbjct: 97 PTLKSVGDIRSFHGLASFYRRFVPNFSTVASPLNELV--KKNMAFTWGEKQEQAFALLKE 270
Query: 1102 YLSSPPVMAPPIGGKPMKLYISATNGTIGSMLAQEDENSKERAIFYLSRVLNDAETRYTM 1161
L+ PV+A P K +L A+ + ++L Q I Y S L+ A Y
Sbjct: 271 KLTKAPVLALPDFSKTFELECDASGVGVRAVLLQGG-----HPIAYFSEKLHSATLNYPT 435
Query: 1162 IEKLCLCLYFSCVKLKYYIKPIDVMVFSHYDIIKHMLSKPILHSRIGKW 1210
+K L + ++++ + ++ S + +K++ K L+ R KW
Sbjct: 436 YDKELYALIRAPQTWEHFLVCKEFVIHSDHQSLKYIRGKSKLNKRHAKW 582
Score = 28.9 bits (63), Expect(2) = 1e-10
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +2
Query: 1018 FLGFVVHKKGIEINKNKAKAILDTNPP 1044
F GFVV + G++++ K KAI + PP
Sbjct: 23 FSGFVVGRNGVQMDPEKIKAIQEWPPP 103
>BE802896
Length = 416
Score = 65.5 bits (158), Expect = 2e-10
Identities = 46/137 (33%), Positives = 70/137 (50%)
Frame = -2
Query: 1052 SLLGKINFLRRFIVNLSEKTKSFSPLLRLKKEDTFRWEAEHQKAFDELKAYLSSPPVMAP 1111
S LG F RRFI + + S LL+ KE F + + + AFD LK L + P++
Sbjct: 415 SFLGHAGFYRRFIRDFRKVALPLSNLLQ--KEVEFDFNDKCK*AFDCLKRALITTPIIQA 242
Query: 1112 PIGGKPMKLYISATNGTIGSMLAQEDENSKERAIFYLSRVLNDAETRYTMIEKLCLCLYF 1171
P P +L A+N +G +LAQ+ + R I+Y SR L+ A+ YT EK L + F
Sbjct: 241 PDWTAPFELMCDASNYALGVVLAQKID-KLPRVIYYSSRTLDAAQANYTTTEKELLAIVF 65
Query: 1172 SCVKLKYYIKPIDVMVF 1188
+ K Y+ ++V+
Sbjct: 64 ALEKFHSYLLGTRIIVY 14
>BQ628592
Length = 423
Score = 64.3 bits (155), Expect = 4e-10
Identities = 28/76 (36%), Positives = 50/76 (64%), Gaps = 1/76 (1%)
Frame = -1
Query: 1080 LKKEDTFRWEAEHQKAFDELKAYLSSPPVMAPPIGGKPMKLYISATNGTIGSMLAQEDEN 1139
L K W + +Q+AF+++K L++P V+ PP+ G+P LY++ + ++G +L Q D++
Sbjct: 423 LPKNQAILWNSNYQEAFEKIKQSLANPSVLMPPVTGRPFLLYMTMLDESMGCVLVQHDDS 244
Query: 1140 -SKERAIFYLSRVLND 1154
KE+AI+YLS+ D
Sbjct: 243 GKKEQAIYYLSKKFTD 196
>BG725601 similar to PIR|H86337|H86 protein F5M15.26 [imported] - Arabidopsis
thaliana, partial (1%)
Length = 285
Score = 60.1 bits (144), Expect = 8e-09
Identities = 35/89 (39%), Positives = 47/89 (52%)
Frame = -3
Query: 808 ELPIKEDKKPVKQLPRRFHPDVLVKIKEEIERLLRCKFIRTARYVDWLANVVPVIKKNGK 867
+L I D K V Q R+ + + +E+ +L FIR Y L +VV V K NGK
Sbjct: 274 KLAICNDVKLVTQRKRKIREERCQTV*QEVVKLAIASFIRDINYST*LFSVVMVKKPNGK 95
Query: 868 MRVCIDFRDLNAATPKDEYHMPIAEMMVD 896
R+C D+ DLN A PKD Y +P + M D
Sbjct: 94 WRICTDYIDLN*ACPKDAYPLPNIDHMTD 8
>BI317507
Length = 359
Score = 58.2 bits (139), Expect = 3e-08
Identities = 32/114 (28%), Positives = 58/114 (50%)
Frame = -1
Query: 975 DIVVKSPSRDDQLLHLRKSFERMRKYGLKMNPLKCAFGVIAGDFLGFVVHKKGIEINKNK 1034
+I++ SP ++HL + ++K L N KC F ++LG V+ K + ++ NK
Sbjct: 353 NILIYSPDWKSHIMHLTAVLDVLKKERLVANRKKCYFSQTTIEYLGHVISKDCVAMDSNK 174
Query: 1035 AKAILDTNPPTSKKQLQSLLGKINFLRRFIVNLSEKTKSFSPLLRLKKEDTFRW 1088
K++++ P + K++ S L + R+FI + + PL L K D F+W
Sbjct: 173 VKSVIEWPVPKNVKRVCSFLRLTGYYRKFIKDYGKLAP--RPLTDLTKNDGFKW 18
>TC220664 weakly similar to UP|Q84TE0 (Q84TE0) At5g51080, partial (31%)
Length = 724
Score = 57.8 bits (138), Expect = 4e-08
Identities = 30/86 (34%), Positives = 48/86 (54%)
Frame = +1
Query: 1292 SNNEAEYEALISSLEILIALGARNVVVKGDSELVIKQLTKEYKCISENLAKYYTKANNLL 1351
+NN AEY A+I ++ + G + ++GDS+LV Q+ +K +ENL+ Y A L
Sbjct: 64 TNNAAEYRAMILGMKYALKKGFTGIRIQGDSKLVCMQIDGSWKVKNENLSTLYNVAKELK 243
Query: 1352 AKFDDARLGHVSRIDNQEANELAQIA 1377
KF ++ HV R N +A+ A +A
Sbjct: 244 DKFSSFQISHVLRNFNSDADAQANLA 321
>BI498328
Length = 335
Score = 52.8 bits (125), Expect = 1e-06
Identities = 35/103 (33%), Positives = 49/103 (46%), Gaps = 18/103 (17%)
Frame = +1
Query: 1225 KAVKGQAVADFLVDHTL----------PKEIV--------TYVGVQPWKLFFDGSSHKNG 1266
KAVKG A+AD+L L P E + T+ + W + FDG+S+ G
Sbjct: 10 KAVKGSALADYLAQ*PLQGYRPMHPEFPDEDIMALFEEKRTHEDINKWIVCFDGASNALG 189
Query: 1267 TGIGMFIVSPGGTPTKFKFRIKKKCSNNEAEYEALISSLEILI 1309
G+G +VSP F R+ C+NN AEYEA ++ I
Sbjct: 190 HGVGAVLVSPDDQCIPFTARLGFDCTNNMAEYEACALGVQAAI 318
>TC219643 weakly similar to UP|Q6WAY7 (Q6WAY7) Gag/pol polyprotein (Fragment),
partial (8%)
Length = 1320
Score = 52.8 bits (125), Expect = 1e-06
Identities = 23/53 (43%), Positives = 34/53 (63%)
Frame = +3
Query: 809 LPIKEDKKPVKQLPRRFHPDVLVKIKEEIERLLRCKFIRTARYVDWLANVVPV 861
LP+ + PVKQ RR P+ +KIKEE+++ F+ ARY W+AN+VP+
Sbjct: 1158 LPLNPECSPVKQKLRRMKPETSLKIKEEVKK*FDAGFLAVARYPKWVANIVPI 1316
Score = 33.1 bits (74), Expect = 1.0
Identities = 12/16 (75%), Positives = 14/16 (87%)
Frame = +1
Query: 532 WIHGVGAVPSTLHQRI 547
WIH VG VPSTLHQ++
Sbjct: 4 WIHSVGVVPSTLHQKL 51
>AW570005
Length = 413
Score = 49.3 bits (116), Expect = 1e-05
Identities = 30/94 (31%), Positives = 47/94 (49%)
Frame = -2
Query: 1043 PPTSKKQLQSLLGKINFLRRFIVNLSEKTKSFSPLLRLKKEDTFRWEAEHQKAFDELKAY 1102
PP + + L+ L F RRFI + +PL L +D+F W E AF LK
Sbjct: 409 PPRTARSLRGFLRLTGFYRRFIKGYAAMA---APLSHLLTKDSFVWSPEADVAFQALKNV 239
Query: 1103 LSSPPVMAPPIGGKPMKLYISATNGTIGSMLAQE 1136
+++ V+A P KP + A+ +G++L+QE
Sbjct: 238 VTNTLVLALPDFTKPFTVETDASGSDMGAVLSQE 137
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.325 0.140 0.433
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,700,184
Number of Sequences: 63676
Number of extensions: 1073139
Number of successful extensions: 6978
Number of sequences better than 10.0: 59
Number of HSP's better than 10.0 without gapping: 6738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6935
length of query: 1666
length of database: 12,639,632
effective HSP length: 110
effective length of query: 1556
effective length of database: 5,635,272
effective search space: 8768483232
effective search space used: 8768483232
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 66 (30.0 bits)
Lotus: description of TM0240.1