TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0239.1
         (285 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

CD414772 homologue to SP|P14226|PSBO_ Oxygen-evolving enhancer p...    29  2.8
BI317603                                                               28  4.7

>CD414772 homologue to SP|P14226|PSBO_ Oxygen-evolving enhancer protein 1
           chloroplast precursor (OEE1), partial (28%)
          Length = 580

 Score = 28.9 bits (63), Expect = 2.8
 Identities = 14/31 (45%), Positives = 18/31 (57%)
 Frame = +3

Query: 130 EGLSPETQRKVVPSSFRGKEFNGLSVSPKSR 160
           E  SPE  R +VP+S RG  F+G  + P  R
Sbjct: 240 EPASPEVPRTLVPNSARGDSFSGEFLVPSYR 332


>BI317603 
          Length = 335

 Score = 28.1 bits (61), Expect = 4.7
 Identities = 12/31 (38%), Positives = 22/31 (70%)
 Frame = +1

Query: 159 SRRFAQKVQPMVEVHSVFPLVVGVDRKKLPK 189
           SR + + V+P+V++ ++   ++GVDRK L K
Sbjct: 94  SRVYWEMVEPVVKIRTLRARLIGVDRKDLNK 186


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.322    0.137    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,691,103
Number of Sequences: 63676
Number of extensions: 155310
Number of successful extensions: 930
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 858
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 930
length of query: 285
length of database: 12,639,632
effective HSP length: 96
effective length of query: 189
effective length of database: 6,526,736
effective search space: 1233553104
effective search space used: 1233553104
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)