TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0237.3
         (508 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BG789506                                                              107  2e-23
TC221329                                                               29  4.4
TC231291 similar to UP|Q8BU53 (Q8BU53) Mus musculus 2 days pregn...    29  5.7
TC232065 similar to UP|Q9SXL4 (Q9SXL4) Histidine kinase 1, parti...    28  9.7
TC229071 similar to UP|O76323 (O76323) Synapsin s-syn-long (Frag...    28  9.7
TC207129 homologue to UP|Q84XV9 (Q84XV9) Phosphoribosylformylgly...    28  9.7

>BG789506 
          Length = 387

 Score =  107 bits (266), Expect = 2e-23
 Identities = 54/108 (50%), Positives = 73/108 (67%), Gaps = 3/108 (2%)
 Frame = +1

Query: 217 SFSRFVKDHY--VESGEVSDAEHVAFLLYWLSAYVFCTKSLRIPAKLLPLANLLHEGRQL 274
           +FS+++ +H   VE  EVSD EHVAFL  WLS YVFCTKSL++  + +P+A  +HEG+  
Sbjct: 10  TFSKYIAEHKGSVEE-EVSDEEHVAFLTLWLSHYVFCTKSLQVAKRFIPMALQIHEGQNF 186

Query: 275 AMARLVLGNLYQMLNEAVEDIRNVKT-VSLNAAGPLWLFQLWLNAVFE 321
              RL+L  LY+ L EA +D++  K   S   +GP+WL QLWLNA FE
Sbjct: 187 GFGRLLLAVLYESLGEACDDLKKSKDGSSFLVSGPMWLLQLWLNATFE 330


>TC221329 
          Length = 874

 Score = 29.3 bits (64), Expect = 4.4
 Identities = 14/48 (29%), Positives = 28/48 (58%)
 Frame = +1

Query: 12  ATELKLDESKRVAIPEPPNEAEKRAIWKSQVLIPFSVNGTLRAILGPL 59
           ATE + D S ++ + +PPN  +   +W +++++   +NG  R+ L  L
Sbjct: 259 ATEPR-DSSNKLLVGQPPNSLQGNTVWNAKIIL---MNGLSRSALEEL 390


>TC231291 similar to UP|Q8BU53 (Q8BU53) Mus musculus 2 days pregnant adult
           female oviduct cDNA, RIKEN full-length enriched library,
           clone:E230038K10 product:procollagen-proline,
           2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase),
           alpha II polypeptide, full insert sequence, partial (8%)
          Length = 626

 Score = 28.9 bits (63), Expect = 5.7
 Identities = 23/108 (21%), Positives = 44/108 (40%), Gaps = 3/108 (2%)
 Frame = +1

Query: 71  PEEHESFHPSVRGEELILAFQPSYRMPFLNDPKRAFRSAPPNPSANDK-AYLKWLD--RV 127
           P +  + H     E L++  QPS+    LN+P+   R      S++D  AY+  ++   +
Sbjct: 328 PRDGNTHHQRTSSESLVIEEQPSWLDDLLNEPETPVRRGGHRRSSSDSFAYIDTVNASNI 507

Query: 128 EEAKRQHWKDVGILDLIQLSRSQVSYNPAMLLSALYFWERSTNCLHVP 175
             A +  +K   ++ +   S                 ++RS +  HVP
Sbjct: 508 NYANQDEYKYKNMMSIPSWSSQD--------------FDRSKDARHVP 609


>TC232065 similar to UP|Q9SXL4 (Q9SXL4) Histidine kinase 1, partial (5%)
          Length = 956

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 21/77 (27%), Positives = 34/77 (43%), Gaps = 1/77 (1%)
 Frame = +1

Query: 85  ELILAFQPSYRMPFLNDPKRAFRSAPPNPSANDKAYLKWLDRVEEAKRQHWK-DVGILDL 143
           E+IL F PS   P  N   +A  S  P P  +     +WL        Q ++  V +L  
Sbjct: 211 EMILCFFPSGETPLYNLQHQACHSEHPQPVVHHLQLQQWLPFFRALWLQPFELLVYLLQA 390

Query: 144 IQLSRSQVSYNPAMLLS 160
           I  +  ++S++  + LS
Sbjct: 391 ISSNLQEISFHSLLYLS 441


>TC229071 similar to UP|O76323 (O76323) Synapsin s-syn-long (Fragment),
           partial (4%)
          Length = 488

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 15/36 (41%), Positives = 16/36 (43%)
 Frame = +2

Query: 77  FHPSVRGEELILAFQPSYRMPFLNDPKRAFRSAPPN 112
           F  S R    IL F P Y  PFL  P +  R   PN
Sbjct: 74  FVASSRLPSFILFFSPKYPYPFLQFPTKTLR*PAPN 181


>TC207129 homologue to UP|Q84XV9 (Q84XV9) Phosphoribosylformylglycinamidine
            synthase, complete
          Length = 4134

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 17/56 (30%), Positives = 28/56 (49%)
 Frame = -1

Query: 437  LVSRQFGLSQALPNTLFDKSLVLYPGAVKRAYAFDTTVHFYNKRLLNLSPFTYAPS 492
            +V ++F  +    NTLF +S+   PGA+    +   T     K  L +SP T++ S
Sbjct: 2001 VVKKRFEQTDGKLNTLFRESITSIPGAISSG-SLS*TTRLNLKVFLGMSPRTFSSS 1837


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.320    0.135    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,043,744
Number of Sequences: 63676
Number of extensions: 359740
Number of successful extensions: 1813
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1806
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1812
length of query: 508
length of database: 12,639,632
effective HSP length: 101
effective length of query: 407
effective length of database: 6,208,356
effective search space: 2526800892
effective search space used: 2526800892
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)