TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0237.12
         (2349 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

AW570169                                                              149  2e-35
AI960492                                                               38  8e-06
TC221365 similar to UP|Q96W55 (Q96W55) Ribosomal protein L39, co...    33  1.9
AW307208 similar to GP|20804893|dbj proline transport protein-li...    32  3.2
TC228250 UP|Q84P29 (Q84P29) Seed calcium dependent protein kinas...    32  4.2
TC215333 similar to UP|P93344 (P93344) Aldehyde dehydrogenase (N...    31  7.2
BF070108                                                               31  7.2

>AW570169 
          Length = 366

 Score =  149 bits (375), Expect = 2e-35
 Identities = 74/80 (92%), Positives = 76/80 (94%)
 Frame = +2

Query: 5   SPESIFLEDFGQTVDLTRRIREVLLNYPEGTTVLKELIQNADDAGATTVSLCLDRRSHAG 64
           SPESIFLEDFGQTVDLTRRIREVLLNYPEGTTVLKELIQNADDAGATTVSLCLDRRSH  
Sbjct: 125 SPESIFLEDFGQTVDLTRRIREVLLNYPEGTTVLKELIQNADDAGATTVSLCLDRRSHPA 304

Query: 65  DSLLSSSLSQWQGPALLAYN 84
            SLLS SL+QWQGPALLA+N
Sbjct: 305 GSLLSDSLAQWQGPALLAFN 364



 Score = 70.9 bits (172), Expect = 6e-12
 Identities = 35/73 (47%), Positives = 46/73 (62%)
 Frame = +2

Query: 1380 EAFGQHEALTTRLKHILEMYADGPGTLFELVQNAEDAGASEVIFLLDKSQYGTSSVLSPE 1439
            E FGQ   LT R++ +L  Y +G   L EL+QNA+DAGA+ V   LD+  +   S+LS  
Sbjct: 146  EDFGQTVDLTRRIREVLLNYPEGTTVLKELIQNADDAGATTVSLCLDRRSHPAGSLLSDS 325

Query: 1440 MADWQGPALYCFN 1452
            +A WQGPAL  FN
Sbjct: 326  LAQWQGPALLAFN 364


>AI960492 
          Length = 391

 Score = 37.7 bits (86), Expect(2) = 8e-06
 Identities = 20/55 (36%), Positives = 33/55 (59%), Gaps = 1/55 (1%)
 Frame = +2

Query: 40 ELIQNADDAGATTVSLCLDRRSHAGDSLLSSSLSQWQGPALLA-YNDAVFTEDDF 93
          +L++ AD   A  + L  D+R H   SLL  +L ++QGPAL+A +  A  + ++F
Sbjct: 8  DLLELADCCKAKRLHLIYDKREHPRQSLLQHNLGEFQGPALVAIFECACLSREEF 172



 Score = 32.3 bits (72), Expect(2) = 8e-06
 Identities = 16/44 (36%), Positives = 23/44 (51%)
 Frame = +3

Query: 115 GVGFNSVYHLTDLPSFVSGKYVVLFDPQGVYLPRVSAANPGKRI 158
           G+G    Y + DL S +SG Y  +FDP+G  L   S   P  ++
Sbjct: 228 GLGLVCCYSICDLLSVISGGYFYMFDPRG*VLGAPSTNPPSAKM 359


>TC221365 similar to UP|Q96W55 (Q96W55) Ribosomal protein L39, complete
          Length = 514

 Score = 32.7 bits (73), Expect = 1.9
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -1

Query: 1113 MRILDGECSSTALLYCLGWMCPPGG 1137
            +R  DG C+S +   C GW CP GG
Sbjct: 199  LRCRDGSCASASASRCSGWCCPFGG 125


>AW307208 similar to GP|20804893|dbj proline transport protein-like {Oryza
            sativa (japonica cultivar-group)}, partial (7%)
          Length = 397

 Score = 32.0 bits (71), Expect = 3.2
 Identities = 19/45 (42%), Positives = 25/45 (55%)
 Frame = -3

Query: 966  PSGVFRESETLDIMRGLGLKTSVSPDTVLESARCIEHLMHEDQQK 1010
            PSG   + E L+I   L L TS+SP    ESA  I+   HE ++K
Sbjct: 392  PSGHMTKLEKLNIHPQLKLVTSISPTCCHESADGIDQFHHEKKKK 258


>TC228250 UP|Q84P29 (Q84P29) Seed calcium dependent protein kinase a,
           complete
          Length = 1843

 Score = 31.6 bits (70), Expect = 4.2
 Identities = 27/101 (26%), Positives = 46/101 (44%), Gaps = 3/101 (2%)
 Frame = +3

Query: 516 LFDMLL-KYNSSKVITPGTVRQFLRECESCNHLSRAHKLLLLEYCLEDLVDDDVGKAA-- 572
           LFD ++ K + S+      ++  +   E+C+ L   H+ L  E  L D +D+D    A  
Sbjct: 480 LFDRIVQKGHYSERQAARLIKTIVEVVEACHSLGVMHRDLKPENFLFDTIDEDAKLKATD 659

Query: 573 YNLPLLPLANGNFASFLEASKGIPYFICDELEYKLLEPVSD 613
           + L +      +F   +    G PY++  E+  KL  P SD
Sbjct: 660 FGLSVFYKPGESFCDVV----GSPYYVAPEVLRKLYGPESD 770


>TC215333 similar to UP|P93344 (P93344) Aldehyde dehydrogenase (NAD+)  ,
            partial (73%)
          Length = 1405

 Score = 30.8 bits (68), Expect = 7.2
 Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
 Frame = +2

Query: 2038 HRKLCYIAQTDSTNISFLSC-----QLLEKLLVKLLPVEWQHASLVSWTPGIHGQPSLEW 2092
            HR L Y+ Q     + FL         L +LLV LL   W+  SL+   P I G+ SL W
Sbjct: 275  HRYLLYMQQNYFMRLDFLLVF*M*YLALVQLLVLLLLATWKLTSLLLLVPLILGKLSLNW 454


>BF070108 
          Length = 416

 Score = 30.8 bits (68), Expect = 7.2
 Identities = 22/92 (23%), Positives = 41/92 (43%)
 Frame = -3

Query: 467 APVIYSNLGGGRWVSPSEAFLHDEKFTKSKDLSLALMQLGMPVVHLPNSLFDMLLKYNSS 526
           A +I SN        P +A LHD     + D  ++ + L +P++ +PN+   + ++    
Sbjct: 261 ASIILSNF-------PVQAKLHDSSANPTLDCLVSYITLWVPLMIIPNNSSVICIRKTCK 103

Query: 527 KVITPGTVRQFLRECESCNHLSRAHKLLLLEY 558
           +     ++     EC SC HL  +  L +  Y
Sbjct: 102 RQADLRSILFHNVECASCIHLQLSIALKMHTY 7


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.321    0.139    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 109,524,388
Number of Sequences: 63676
Number of extensions: 1668624
Number of successful extensions: 7681
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 7413
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7678
length of query: 2349
length of database: 12,639,632
effective HSP length: 113
effective length of query: 2236
effective length of database: 5,444,244
effective search space: 12173329584
effective search space used: 12173329584
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 67 (30.4 bits)