TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0234.13
         (1451 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

CD402931 similar to GP|9081793|dbj P0489A01.23 {Oryza sativa (ja...   162  4e-44
TC231883 weakly similar to UP|Q7QBQ3 (Q7QBQ3) AgCP4056 (Fragment...   140  5e-33
BU081086 weakly similar to GP|27817864|db OJ1081_B12.13 {Oryza s...   134  2e-31
TC213121                                                               93  1e-18
TC205614                                                               59  2e-08
TC224067                                                               44  5e-04
TC212860 weakly similar to UP|PIF1_YEAST (P07271) DNA repair and...    44  7e-04
TC215239 UP|H3_PEA (P02300) Histone H3, partial (39%)                  35  0.18
TC216888 similar to UP|Q6YV21 (Q6YV21) Uridine kinase-like prote...    35  0.31

>CD402931 similar to GP|9081793|dbj P0489A01.23 {Oryza sativa (japonica
            cultivar-group)}, partial (5%)
          Length = 617

 Score =  162 bits (410), Expect(2) = 4e-44
 Identities = 89/156 (57%), Positives = 113/156 (72%)
 Frame = +2

Query: 1001 GTGKTFLWKTLSYRLRSERKIVLNVASSGITSLLLPGGRTAHSLFSIPLVLNEDSCCNIR 1060
            GT KTFLWKTLS  +RS + ++ +     + SLLLP G TAHS FSIPLV+ +DS CNI 
Sbjct: 11   GTSKTFLWKTLSAGMRS-KGLMSSSCLKRLASLLLPRG*TAHSTFSIPLVIKDDSTCNIN 187

Query: 1061 LGSNKAELLKHTSLIIWDEAPMVNRWAFEAVDRTLRDIMEVGDVYGGGKPFGGKVVVLGG 1120
             GS +++LL HT LIIWDE P++N++ FEA+DRTL+DIM   +     KPFGGK VVLGG
Sbjct: 188  QGSARSKLLLHTKLIIWDETPVMNKFCFEALDRTLQDIMASQNKDNATKPFGGK-VVLGG 364

Query: 1121 DFRQTLPIIPKASREEIVMATINSSRLWKFCKVLKL 1156
            DFRQ LP+I K SR++IV + IN+S+     KVLKL
Sbjct: 365  DFRQILPVIRKGSRQDIVGSAINASK-----KVLKL 457



 Score = 36.2 bits (82), Expect(2) = 4e-44
 Identities = 20/51 (39%), Positives = 31/51 (60%)
 Frame = +1

Query: 1158 ENMCLHGNDSLHDCEKLVEFSKWILDIGDGNLGDYNDGECDLDIPHDLMVP 1208
            +NM L   ++  D + + EF  WIL I DGN  + ++GE  +DIP +L+ P
Sbjct: 460  KNMRLGTTNNNEDRDDIREFVDWILMIRDGNRDEEDEGE--IDIPKNLLNP 606


>TC231883 weakly similar to UP|Q7QBQ3 (Q7QBQ3) AgCP4056 (Fragment), partial
            (17%)
          Length = 1263

 Score =  140 bits (352), Expect = 5e-33
 Identities = 63/128 (49%), Positives = 90/128 (70%)
 Frame = +1

Query: 495  MYTIEFQKRGLPHAHILIWLAPGSKLTTPEKIDSVICAELPDPVASPKLFEVVSMFMVHG 554
            M+TIEFQKRGLPH  +L++L P ++  + ++ID +I AE+P     P+L+ +V   MVHG
Sbjct: 877  MHTIEFQKRGLPHIQLLLFLHPDNQYPSSDEIDHIISAEIPSHEDDPELYTLVQNHMVHG 1056

Query: 555  PCGSSRKNSPCMVNGRCSKFFPKKYVDKTSFDIDGYPTYRRRNTGVFVERRDVQLDNGYV 614
            PCG  + +SPCM  G+CS+F+PK ++  T  D++GY  YRRRN G  + +  V +DN Y+
Sbjct: 1057 PCGILQSHSPCMKEGKCSRFYPKIFLPNTLLDLNGYLVYRRRNDGRTILKNSVIVDNRYL 1236

Query: 615  VPYNAKLL 622
            VPYNAKLL
Sbjct: 1237 VPYNAKLL 1260


>BU081086 weakly similar to GP|27817864|db OJ1081_B12.13 {Oryza sativa
            (japonica cultivar-group)}, partial (7%)
          Length = 426

 Score =  134 bits (338), Expect = 2e-31
 Identities = 67/141 (47%), Positives = 94/141 (66%)
 Frame = +2

Query: 1269 SDSVVKVDEDVAIDANWITIEFLNGIKGSGLPDHRLCLKIGTPIMLMRNIDVSAGLCNGT 1328
            SDS+ K D   +   + IT EF+N +  S LP+H++ LK+ + IML+RN+D + GLCN T
Sbjct: 2    SDSIEKSDTIESEGFSTITTEFINSLSTSRLPNHKIKLKVDSRIMLLRNLDQNEGLCNST 181

Query: 1329 RLIVLDLRPNLIYGKVLNGNKAGTKTYIPRMTIVPSDSGLHVKVQRRQFPVCVCFAMTIN 1388
            RLI+     ++I  K+++G   G   YIPR+   PS S    K+ RR+FP+ V +AMTIN
Sbjct: 182  RLIITMFADHIIEAKIMSGKGQGNTVYIPRLATSPSQSPWPFKLIRRKFPIIVSYAMTIN 361

Query: 1389 KSQGQTLSRVGVFLPRPVFSH 1409
            KSQGQ L+ VG++LP PVFSH
Sbjct: 362  KSQGQLLASVGLYLPTPVFSH 424


>TC213121 
          Length = 713

 Score = 92.8 bits (229), Expect = 1e-18
 Identities = 45/110 (40%), Positives = 69/110 (61%)
 Frame = +2

Query: 928  KDFPGIPYPISDEVPQFENVMLFNELRFDIDDMSVKHNDHLMKLNNGQRKVYDEVIDAVN 987
            ++FP + YPI   V  + N +++NEL +D D ++   +     L +    ++++++  + 
Sbjct: 281  RNFPLMSYPIGYIVNPYGNKLIYNELAYDKDILAA*FSRCYHSLTDEHASIFNKIMHMIA 460

Query: 988  KSDGGFYFVYGSGGTGKTFLWKTLSYRLRSERKIVLNVASSGITSLLLPG 1037
               GG YF+YG GGTGKTF+WKTLS  + S   IVL +ASSGI S+LLPG
Sbjct: 461  TQSGGVYFLYGYGGTGKTFVWKTLSSTIHSNSGIVLTMASSGILSMLLPG 610



 Score = 41.6 bits (96), Expect = 0.003
 Identities = 24/77 (31%), Positives = 40/77 (51%)
 Frame = +3

Query: 680 CRYLSACEAAWRSFSFRIHDHWPPVQRLPFHMPNKQVVLYGNEEPIDRVVQRGQMSETMF 739
           C Y+S  E   +  +F +H   P V+ L FH+ N+        + I  ++ +  + E++F
Sbjct: 30  CIYVSPPETC*KISAFPMHGRAPTVECLYFHLENQ*P--*KESQQIGSMLSKSTIKESIF 203

Query: 740 TGWMVANMIYEHGRHLT 756
           T  M +N +Y HGR LT
Sbjct: 204 TACMDSNKMYHHGRDLT 254


>TC205614 
          Length = 742

 Score = 58.5 bits (140), Expect = 2e-08
 Identities = 32/81 (39%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
 Frame = +2

Query: 637 SNCIKYLFKYINKGVDRV-TVSMKNECNEGQNVPEVDEIQQYY-DCRYLSACEAAWRSFS 694
           SN   ++F YI+   +     S+K +        +V     YY DC+Y+S CEA WR FS
Sbjct: 497 SNLFSFIFHYISMVENHN*RTSLKLKDLASIEASQVSFPHMYYLDCQYISPCEACWRIFS 676

Query: 695 FRIHDHWPPVQRLPFHMPNKQ 715
           F+I+   P V+RL FH+PN+Q
Sbjct: 677 FQIYGRIPIVERLYFHLPNEQ 739


>TC224067 
          Length = 415

 Score = 43.9 bits (102), Expect = 5e-04
 Identities = 27/41 (65%), Positives = 31/41 (74%), Gaps = 2/41 (4%)
 Frame = -2

Query: 1381 VCFAMTINKSQGQTLSRV-GVFLPRPV-FSHGQLYVALSRV 1419
            VC+ M INKS GQTLS+V GV LPRP   SHGQ YV L++V
Sbjct: 360  VCYTMKINKSHGQTLSQVGGVLLPRPN**SHGQ-YVTLNQV 241


>TC212860 weakly similar to UP|PIF1_YEAST (P07271) DNA repair and recombination
            protein PIF1, mitochondrial precursor, partial (8%)
          Length = 596

 Score = 43.5 bits (101), Expect = 7e-04
 Identities = 29/57 (50%), Positives = 35/57 (60%), Gaps = 8/57 (14%)
 Frame = +2

Query: 1383 FAMTINKSQGQTLSRVGVFLPRPVFSHGQLYVALSRVKSRDGL--------KIYVDQ 1431
            +AM+I+K QG TL RV   L R  F  G +YVALSRV+S +GL        KI VDQ
Sbjct: 5    WAMSIHKCQGMTLERVHTDLSR-AFGCGMVYVALSRVRSLEGLHLSAFNRSKIKVDQ 172


>TC215239 UP|H3_PEA (P02300) Histone H3, partial (39%)
          Length = 340

 Score = 35.4 bits (80), Expect = 0.18
 Identities = 16/22 (72%), Positives = 18/22 (81%)
 Frame = -3

Query: 1373 QRRQFPVCVCFAMTINKSQGQT 1394
            QR  FP+ VCFAMT NKS+GQT
Sbjct: 338  QR**FPLIVCFAMTTNKSEGQT 273


>TC216888 similar to UP|Q6YV21 (Q6YV21) Uridine kinase-like protein, partial
           (42%)
          Length = 1425

 Score = 34.7 bits (78), Expect = 0.31
 Identities = 26/81 (32%), Positives = 35/81 (43%), Gaps = 7/81 (8%)
 Frame = +1

Query: 66  TLLWDLIMENDVRSREFLANIRSYNSAFAFTSFGGKIESGLN------DGGGPPQFVISG 119
           T L D I   + R  EF + I   NS FA +      +  L       +G GP  F ++G
Sbjct: 670 TQLSDQISTLNERMDEFTSRIEELNSKFAISKDSAASQQNLALQAEACNGSGPTSFFVTG 849

Query: 120 -QNYHRIGSLLPNVGETPKFA 139
             N    GSLLPN   + + A
Sbjct: 850 LSNGSLTGSLLPNSSSSSQLA 912


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.323    0.141    0.433 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,605,695
Number of Sequences: 63676
Number of extensions: 1012774
Number of successful extensions: 4728
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 4677
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4723
length of query: 1451
length of database: 12,639,632
effective HSP length: 109
effective length of query: 1342
effective length of database: 5,698,948
effective search space: 7647988216
effective search space used: 7647988216
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 65 (29.6 bits)