BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0233.7
(482 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BG882562 121 6e-28
BM892478 97 1e-20
AW781991 81 9e-16
AW569215 weakly similar to GP|4914326|gb| F14N23.12 {Arabidopsis... 79 6e-15
BI973310 63 3e-10
BM178397 similar to GP|4914326|gb| F14N23.12 {Arabidopsis thalia... 59 4e-09
TC220316 45 7e-05
AW598452 weakly similar to GP|15982769|gb| At2g27110/T20P8.16 {A... 35 0.097
BE473707 30 3.1
TC225822 homologue to PRF|1609232A.0|226866|1609232A 31kD glycop... 30 3.1
TC225820 weakly similar to UP|Q94AG3 (Q94AG3) At1g72160/T9N14_8,... 30 3.1
>BG882562
Length = 416
Score = 121 bits (304), Expect = 6e-28
Identities = 55/96 (57%), Positives = 73/96 (75%)
Frame = +3
Query: 201 VFWVDARSRAAYDSFEDVVSFDSTYLTNR*NMSFSPFVGVNHHGQSILFGCGLLSRKDKE 260
VFW+D+RSRAAY F DVV+FDST L+N + FVGVNHHG+S+L GCGLL+ + E
Sbjct: 129 VFWIDSRSRAAYSYFGDVVAFDSTCLSNNYEIPLVAFVGVNHHGKSVLLGCGLLADETFE 308
Query: 261 TYVWLFKS*LECMRGRAPKAIITYQCRSIQAAVVEV 296
TY+WLF++ L CM GR P+ IIT C+++Q+A+ EV
Sbjct: 309 TYIWLFRAWLTCMTGRPPQTIITNXCKAMQSAIAEV 416
>BM892478
Length = 429
Score = 97.4 bits (241), Expect = 1e-20
Identities = 45/107 (42%), Positives = 66/107 (61%)
Frame = +3
Query: 198 CEMVFWVDARSRAAYDSFEDVVSFDSTYLTNR*NMSFSPFVGVNHHGQSILFGCGLLSRK 257
C +FW D RSR + F DV+ D++Y + F+ FVGVNHH Q +L GC L++ +
Sbjct: 105 CMNIFWADGRSRYSCSHFGDVLVLDTSYRKTVYLVPFATFVGVNHHKQPVLLGCALIADE 284
Query: 258 DKETYVWLFKS*LECMRGRAPKAIITYQCRSIQAAVVEVFSESHHRF 304
+E++ WLF++ L M GR P +I Q +IQ A+ +VF +HHRF
Sbjct: 285 SEESFTWLFQTWLRAMSGRLPLTVIADQDIAIQRAIAKVFPVTHHRF 425
>AW781991
Length = 419
Score = 81.3 bits (199), Expect = 9e-16
Identities = 34/68 (50%), Positives = 47/68 (69%)
Frame = +3
Query: 201 VFWVDARSRAAYDSFEDVVSFDSTYLTNR*NMSFSPFVGVNHHGQSILFGCGLLSRKDKE 260
VFW D ++R Y F D V+FD+TY +NR + F+ F GVNHHGQ +LFGC L + +
Sbjct: 213 VFWADPKARMNYTFFGDTVTFDTTYRSNRYRLPFAFFTGVNHHGQPVLFGCAFLINESEA 392
Query: 261 TYVWLFKS 268
++VWLFK+
Sbjct: 393 SFVWLFKT 416
>AW569215 weakly similar to GP|4914326|gb| F14N23.12 {Arabidopsis thaliana},
partial (19%)
Length = 425
Score = 78.6 bits (192), Expect = 6e-15
Identities = 41/138 (29%), Positives = 76/138 (54%), Gaps = 2/138 (1%)
Frame = +1
Query: 219 VSFDSTYLTNR*NMSFSPFVGVNHHGQSILFGCGLLSRKDKETYVWLFKS*LECMRGRAP 278
V FD+TY +M ++GV+++G + F C LL ++ +++ W K+ L M+G+AP
Sbjct: 10 VVFDTTYRVEAYDMLLGIWLGVDNNGMTCFFSCALLRDENIQSFSWALKAFLGFMKGKAP 189
Query: 279 KAIITYQCRSIQAAVVEVFSESHHRFCFWHIMKKVPEKLNGL--TQYKEIKKTLKTLVYD 336
+ I+T ++ A+ ++ H FC WHI+ K + + L +QY E K L Y+
Sbjct: 190 QTILTDHNMWLKEAIAVELPQTKHAFCIWHILSKFSDWFSLLLGSQYDEWKAEFHRL-YN 366
Query: 337 SIEASEFDDG*HKMIEDY 354
+ +F++G +M++ Y
Sbjct: 367 LEQVEDFEEGWRQMVDQY 420
>BI973310
Length = 457
Score = 62.8 bits (151), Expect = 3e-10
Identities = 24/67 (35%), Positives = 44/67 (64%)
Frame = +3
Query: 342 EFDDG*HKMIEDYRLQENEWLSSLFSDRRRWVPIYVKSIFWAGMSTTQRSESMNAFFDGY 401
EF+ H ++E + + +NEWL S+++ R+ WVP+Y++ F+ +S + +E + +FFDGY
Sbjct: 12 EFESYWHSLLERFYVMDNEWLQSIYNSRQHWVPVYLRETFFGEISLNEGNEYLISFFDGY 191
Query: 402 VNSKNLI 408
V S +
Sbjct: 192 VFSSTTL 212
>BM178397 similar to GP|4914326|gb| F14N23.12 {Arabidopsis thaliana}, partial
(20%)
Length = 422
Score = 59.3 bits (142), Expect = 4e-09
Identities = 33/106 (31%), Positives = 57/106 (53%), Gaps = 2/106 (1%)
Frame = +1
Query: 302 HRFCFWHIMKKVPEKLNGLT--QYKEIKKTLKTLVYDSIEASEFDDG*HKMIEDYRLQEN 359
H FC W I+ K P N + +Y + K L Y+ +F+ G +M + L N
Sbjct: 52 HAFCIWMIVAKFPSWFNAVLGERYNDWKAEFYRL-YNLESVEDFELGWREMACSFGLHSN 228
Query: 360 EWLSSLFSDRRRWVPIYVKSIFWAGMSTTQRSESMNAFFDGYVNSK 405
+ +L+S R W +++S F AGM+TT +S+S+NAF +++++
Sbjct: 229 RHMVNLYSSRSLWALPFLRSHFLAGMTTTGQSKSINAFIQRFLSAQ 366
>TC220316
Length = 988
Score = 45.1 bits (105), Expect = 7e-05
Identities = 18/52 (34%), Positives = 34/52 (64%)
Frame = +1
Query: 354 YRLQENEWLSSLFSDRRRWVPIYVKSIFWAGMSTTQRSESMNAFFDGYVNSK 405
Y L+++ WL ++ R WVP+Y+K F+AG+ +ES+++FF +N++
Sbjct: 67 YGLKDDAWLKEMYQKRASWVPLYLKGTFFAGI---PMNESLDSFFGALLNAQ 213
>AW598452 weakly similar to GP|15982769|gb| At2g27110/T20P8.16 {Arabidopsis
thaliana}, partial (7%)
Length = 256
Score = 34.7 bits (78), Expect = 0.097
Identities = 16/41 (39%), Positives = 24/41 (58%)
Frame = +2
Query: 207 RSRAAYDSFEDVVSFDSTYLTNR*NMSFSPFVGVNHHGQSI 247
RSR +Y D S D+ Y +R +S++P+ G N HG+ I
Sbjct: 134 RSRTSYKHMGDAESLDAAYGKHRYAVSYAPYTGRNCHGRMI 256
>BE473707
Length = 470
Score = 29.6 bits (65), Expect = 3.1
Identities = 19/40 (47%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +1
Query: 350 MIEDYRLQENEWLSSLFSDR-RRWVPIYVKSIFWAGMSTT 388
+I RLQ N LS L S R V ++ KS +WAGMS T
Sbjct: 247 LILSLRLQSNPRLSMLLSSLFLRKVMLFGKSEWWAGMSAT 366
>TC225822 homologue to PRF|1609232A.0|226866|1609232A 31kD glycoprotein.
{Glycine max;} , partial (44%)
Length = 820
Score = 29.6 bits (65), Expect = 3.1
Identities = 19/40 (47%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = -1
Query: 350 MIEDYRLQENEWLSSLFSDR-RRWVPIYVKSIFWAGMSTT 388
+I RLQ N LS L S R V ++ KS +WAGMS T
Sbjct: 679 LILSLRLQSNPRLSMLLSSLFLRKVMLFGKSEWWAGMSAT 560
>TC225820 weakly similar to UP|Q94AG3 (Q94AG3) At1g72160/T9N14_8, partial
(84%)
Length = 1376
Score = 29.6 bits (65), Expect = 3.1
Identities = 19/40 (47%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +3
Query: 350 MIEDYRLQENEWLSSLFSDR-RRWVPIYVKSIFWAGMSTT 388
+I RLQ N LS L S R V ++ KS +WAGMS T
Sbjct: 750 LILSLRLQSNPRLSMLLSSLFLRKVMLFGKSEWWAGMSAT 869
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.358 0.160 0.581
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,829,455
Number of Sequences: 63676
Number of extensions: 318929
Number of successful extensions: 4479
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 3331
Number of HSP's successfully gapped in prelim test: 90
Number of HSP's that attempted gapping in prelim test: 1042
Number of HSP's gapped (non-prelim): 3549
length of query: 482
length of database: 12,639,632
effective HSP length: 101
effective length of query: 381
effective length of database: 6,208,356
effective search space: 2365383636
effective search space used: 2365383636
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 14 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.8 bits)
S2: 61 (28.1 bits)
Lotus: description of TM0233.7