BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0233.11
(95 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC226025 similar to UP|RK25_PEA (P11892) 50S ribosomal protein C... 103 1e-23
CF921948 30 0.20
TC209136 similar to UP|Q9FQL9 (Q9FQL9) Cytochrome P450, partial ... 30 0.20
TC208396 similar to GB|AAQ62419.1|34146822|BT010418 At4g05400 {A... 30 0.26
BM139543 29 0.34
TC214036 similar to UP|ADF2_PETHY (Q9FVI1) Actin-depolymerizing ... 29 0.34
TC215353 similar to UP|Q9FYW7 (Q9FYW7) BAC19.9, partial (29%) 29 0.44
TC215363 homologue to UP|Q8LRL5 (Q8LRL5) Nam-like protein 10, pa... 29 0.44
TC225813 28 0.57
TC210328 similar to UP|Q91TK2 (Q91TK2) T101.1, partial (21%) 28 0.57
TC206057 homologue to UP|Q9ZRX1 (Q9ZRX1) Cytosolic chaperonin, d... 28 0.98
BQ740313 27 1.3
TC221568 weakly similar to UP|Q94JM2 (Q94JM2) AT3g06200/F28L1_14... 27 1.3
TC232799 weakly similar to UP|Q84TD8 (Q84TD8) At1g67170, partial... 27 1.7
BM309792 similar to GP|21592931|gb| phosphoserine aminotransfera... 27 1.7
TC215889 homologue to PIR|T09261|T09261 JUN kinase-activation-do... 27 1.7
TC215354 similar to GB|AAN65138.1|24899847|BT001251 expressed pr... 27 2.2
TC212810 similar to UP|Q9W1I6 (Q9W1I6) CG18426-PA (LD12035p), pa... 27 2.2
TC226468 weakly similar to UP|O65450 (O65450) Glycine-rich prote... 27 2.2
TC214141 similar to UP|Q947D4 (Q947D4) Dehydration-responsive pr... 26 2.8
>TC226025 similar to UP|RK25_PEA (P11892) 50S ribosomal protein CL25,
chloroplast precursor, partial (79%)
Length = 726
Score = 103 bits (258), Expect = 1e-23
Identities = 58/91 (63%), Positives = 65/91 (70%), Gaps = 5/91 (5%)
Frame = +1
Query: 8 SSIFGVAMAAAPPQ---MERRGNG--VIVCSSRPQKKATAHHRKSRPRKSQPWDINRKPT 62
SS+FG + A Q + RR +G IVCSSRPQKKATAHH K+RPRK+Q WD NRKPT
Sbjct: 247 SSMFGCGVVMAASQAMGIGRRSDGGLTIVCSSRPQKKATAHHMKTRPRKTQAWDRNRKPT 426
Query: 63 VYAPLPPLPSDWTLVVSAADASSDEAVAVTP 93
VY PLPPLP DWTLV+ ADASS VTP
Sbjct: 427 VYDPLPPLPPDWTLVI-PADASS---APVTP 507
>CF921948
Length = 603
Score = 30.0 bits (66), Expect = 0.20
Identities = 15/43 (34%), Positives = 22/43 (50%)
Frame = -2
Query: 14 AMAAAPPQMERRGNGVIVCSSRPQKKATAHHRKSRPRKSQPWD 56
++A+A PQ + NGV SS P+ +HH + PWD
Sbjct: 248 SVASAAPQS*KL*NGVSSLSSAPKTLTCSHHGLPYQMRRLPWD 120
>TC209136 similar to UP|Q9FQL9 (Q9FQL9) Cytochrome P450, partial (63%)
Length = 1028
Score = 30.0 bits (66), Expect = 0.20
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = +1
Query: 54 PWDINRKPTVYAPLPPLPSDWTLVVSAADASSDEAVAVTPS 94
P +P V+ PLPP S + V +AAD +S +A + PS
Sbjct: 52 PIGFQAQPHVWQPLPPSFSSSSAVSAAADTTSPQAQSPGPS 174
>TC208396 similar to GB|AAQ62419.1|34146822|BT010418 At4g05400 {Arabidopsis
thaliana;} , partial (67%)
Length = 891
Score = 29.6 bits (65), Expect = 0.26
Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 5/60 (8%)
Frame = +2
Query: 18 APP----QMERRGNGVIVCSSRPQKKATAHHRK-SRPRKSQPWDINRKPTVYAPLPPLPS 72
APP + ER G SRP K HH + +R R +P + P APL +PS
Sbjct: 116 APPHPTLRRERHRKGQSEDQSRPSAKTLPHHHEETRIRDRRPTHVA*APRT*APLRTMPS 295
>BM139543
Length = 509
Score = 29.3 bits (64), Expect = 0.34
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = -3
Query: 16 AAAPPQMERRGNGVIVCSSRPQKKATAHHRKSRPRKSQPWD 56
A+A PQ + NGV SS P+ +HH + PWD
Sbjct: 207 ASAAPQS*KL*NGVSSLSSAPKTLTCSHHGLPYQMRRLPWD 85
>TC214036 similar to UP|ADF2_PETHY (Q9FVI1) Actin-depolymerizing factor 2
(ADF 2), partial (97%)
Length = 1011
Score = 29.3 bits (64), Expect = 0.34
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = -1
Query: 16 AAAPPQMERRGNGVIVCSSRPQKKATAHHRKSRPRKSQPWD 56
A+A PQ + NGV SS P+ +HH + PWD
Sbjct: 249 ASAAPQS*KL*NGVSSLSSAPKTLTCSHHGLPYQMRRLPWD 127
>TC215353 similar to UP|Q9FYW7 (Q9FYW7) BAC19.9, partial (29%)
Length = 688
Score = 28.9 bits (63), Expect = 0.44
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +1
Query: 35 RPQKKATAHHRKSRPRKSQPWDINRK 60
RPQ++A +HHR PRKS +RK
Sbjct: 316 RPQRQARSHHRNLGPRKSPRAPQDRK 393
>TC215363 homologue to UP|Q8LRL5 (Q8LRL5) Nam-like protein 10, partial (64%)
Length = 1464
Score = 28.9 bits (63), Expect = 0.44
Identities = 15/43 (34%), Positives = 22/43 (50%), Gaps = 4/43 (9%)
Frame = +3
Query: 21 QMERRGNGVIVCSSRPQKKATA----HHRKSRPRKSQPWDINR 59
Q+ G G V S PQ + A HHR++RP + +P + R
Sbjct: 93 QIPSNGRGAGVALSLPQMRVAANRRSHHRRNRPLQIRPLGLTR 221
>TC225813
Length = 1551
Score = 28.5 bits (62), Expect = 0.57
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +1
Query: 61 PTVYAPLPPLPSDWTLVVSAADASS 85
PT+Y+P PPL S+ ++VV SS
Sbjct: 586 PTIYSPSPPLQSESSVVVEFGTLSS 660
>TC210328 similar to UP|Q91TK2 (Q91TK2) T101.1, partial (21%)
Length = 699
Score = 28.5 bits (62), Expect = 0.57
Identities = 18/66 (27%), Positives = 26/66 (39%), Gaps = 8/66 (12%)
Frame = +1
Query: 36 PQKKATAHHRKSRPRKSQPWDINRKPTVYAPLPP--------LPSDWTLVVSAADASSDE 87
P+ +A + PR+ P D+ R+ YAP PP S WT + S
Sbjct: 367 PRARARSPRHALPPRRRAPRDVPRRRG*YAPAPPGSCGGTITSRSTWTATSPSIPCFSTS 546
Query: 88 AVAVTP 93
+ TP
Sbjct: 547 LIRKTP 564
>TC206057 homologue to UP|Q9ZRX1 (Q9ZRX1) Cytosolic chaperonin,
delta-subunit, complete
Length = 1930
Score = 27.7 bits (60), Expect = 0.98
Identities = 22/65 (33%), Positives = 29/65 (43%), Gaps = 5/65 (7%)
Frame = +3
Query: 34 SRPQKKATAHHRKSRPRKSQPWD--INRKPTVYAPLP---PLPSDWTLVVSAADASSDEA 88
+R TA +R R S P + P+ P P PLPS +L S++ ASS
Sbjct: 258 TRSSSPMTAPPSSTRCRSSSPPPRCSSSSPSPRTPPPATAPLPSSSSLAPSSSSASSSSP 437
Query: 89 VAVTP 93
A TP
Sbjct: 438 TASTP 452
>BQ740313
Length = 423
Score = 27.3 bits (59), Expect = 1.3
Identities = 15/47 (31%), Positives = 20/47 (41%)
Frame = +1
Query: 28 GVIVCSSRPQKKATAHHRKSRPRKSQPWDINRKPTVYAPLPPLPSDW 74
G + RP+ KA AHH + P + P + LPPL W
Sbjct: 241 GSATSARRPKPKARAHHPRRAPFSADPKE----------LPPLRRHW 351
>TC221568 weakly similar to UP|Q94JM2 (Q94JM2) AT3g06200/F28L1_14, partial
(22%)
Length = 425
Score = 27.3 bits (59), Expect = 1.3
Identities = 17/61 (27%), Positives = 27/61 (43%), Gaps = 1/61 (1%)
Frame = +2
Query: 11 FGVAMAAAPPQMERRGNGV-IVCSSRPQKKATAHHRKSRPRKSQPWDINRKPTVYAPLPP 69
FG + PP R +G+ + K ++HR RP++ + +R P P PP
Sbjct: 206 FGKSRTLRPPPRPRSFHGLPFQLRASLSKP*PSNHRHQRPQRRRQGHPHRAPPRLPPRPP 385
Query: 70 L 70
L
Sbjct: 386 L 388
>TC232799 weakly similar to UP|Q84TD8 (Q84TD8) At1g67170, partial (53%)
Length = 867
Score = 26.9 bits (58), Expect = 1.7
Identities = 16/62 (25%), Positives = 19/62 (29%)
Frame = -1
Query: 5 SSCSSIFGVAMAAAPPQMERRGNGVIVCSSRPQKKATAHHRKSRPRKSQPWDINRKPTVY 64
S S V+ A PP R + P A R S+P PW P
Sbjct: 510 SKSSPAARVSAAPVPP*APTRARAASAARAAPPPAPAAARRASQPGAGSPWPSAASPRAA 331
Query: 65 AP 66
P
Sbjct: 330 TP 325
Score = 26.6 bits (57), Expect = 2.2
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 5/50 (10%)
Frame = +1
Query: 11 FGVAMAAAPPQMERRGNGVIVCSSRPQKKATAHHRKSR-----PRKSQPW 55
+G APP+ R G +CS R + + + R +R PR++ W
Sbjct: 229 YGARTRRAPPRCRIRSRGRSICSRRRR*WSRSWRRSTRRCSAWPRRTSAW 378
>BM309792 similar to GP|21592931|gb| phosphoserine aminotransferase
{Arabidopsis thaliana}, partial (20%)
Length = 428
Score = 26.9 bits (58), Expect = 1.7
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +1
Query: 36 PQKKATAHHRKSRPRKSQPWDINRKPTVYAPLPP 69
P++ HHRKSR R P+ ++ PLPP
Sbjct: 286 PRQGIQVHHRKSRVR--SPYPPPNPVGIFRPLPP 381
>TC215889 homologue to PIR|T09261|T09261 JUN
kinase-activation-domain-binding protein homolog -
alfalfa {Medicago sativa;} , partial (98%)
Length = 1420
Score = 26.9 bits (58), Expect = 1.7
Identities = 14/47 (29%), Positives = 19/47 (39%)
Frame = +2
Query: 25 RGNGVIVCSSRPQKKATAHHRKSRPRKSQPWDINRKPTVYAPLPPLP 71
RG +C ++ K H R R + +R APLPP P
Sbjct: 2 RGPSAAICKAKKWKGCRLHRRSRRKHGNSRTTSSRWTLRAAPLPPPP 142
>TC215354 similar to GB|AAN65138.1|24899847|BT001251 expressed protein
{Arabidopsis thaliana;} , partial (65%)
Length = 686
Score = 26.6 bits (57), Expect = 2.2
Identities = 10/17 (58%), Positives = 13/17 (75%)
Frame = +3
Query: 36 PQKKATAHHRKSRPRKS 52
PQ++A +HHR PRKS
Sbjct: 312 PQRQARSHHRNLGPRKS 362
>TC212810 similar to UP|Q9W1I6 (Q9W1I6) CG18426-PA (LD12035p), partial
(11%)
Length = 407
Score = 26.6 bits (57), Expect = 2.2
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Frame = +3
Query: 33 SSRPQKKATAHHRKSRPRKSQPW---DINRKPTVYA 65
+ PQK + H RK RPR +P + +R+P + A
Sbjct: 36 NKHPQKPSDVHGRKPRPRDGRPGAFPEAHRRPLLGA 143
>TC226468 weakly similar to UP|O65450 (O65450) Glycine-rich protein, partial
(20%)
Length = 1041
Score = 26.6 bits (57), Expect = 2.2
Identities = 21/59 (35%), Positives = 25/59 (41%), Gaps = 4/59 (6%)
Frame = -2
Query: 40 ATAHHRKSRPRKSQPWDINRKP----TVYAPLPPLPSDWTLVVSAADASSDEAVAVTPS 94
A AHHR R R ++ P T+ PP P D T A SD A A +PS
Sbjct: 440 APAHHRHRRHRHRHRHRRHQAPAPAPTIIRKSPPAPPDST-------AESDTAPAPSPS 285
>TC214141 similar to UP|Q947D4 (Q947D4) Dehydration-responsive protein RD22
(Fragment), partial (89%)
Length = 1353
Score = 26.2 bits (56), Expect = 2.8
Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Frame = +2
Query: 9 SIFGVAMAAAPPQMERRGNGVIVCSSRPQKKATAHHRKSR-PRKSQPWDINRKPTVYAPL 67
+++ + + P Q R +++ S K+ + RKS P + PW I+ P++ L
Sbjct: 593 TLYSTSFLSNPGQRRLRS*RILLVSV---KRVESKERKSTVPLRLNPWLISALPSLEIML 763
Query: 68 PPLPSDWT 75
P WT
Sbjct: 764 RLCPQKWT 787
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.314 0.124 0.375
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,160,434
Number of Sequences: 63676
Number of extensions: 74274
Number of successful extensions: 596
Number of sequences better than 10.0: 68
Number of HSP's better than 10.0 without gapping: 593
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 594
length of query: 95
length of database: 12,639,632
effective HSP length: 71
effective length of query: 24
effective length of database: 8,118,636
effective search space: 194847264
effective search space used: 194847264
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)
Lotus: description of TM0233.11