TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0227.11
         (425 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC208526 similar to UP|Q6YW97 (Q6YW97) MAP3K protein kinase-like...   328  3e-90
CO985741                                                              193  1e-49
BM731623 weakly similar to PIR|D85436|D854 MAP3K-like protein ki...    61  1e-09
BU577276                                                               50  2e-06
BQ298007 weakly similar to PIR|T47442|T47 disease resistance pro...    39  0.006
TC213924                                                               33  0.32
TC232874 weakly similar to UP|O04020 (O04020) F7G19.3 protein, p...    32  0.42
TC203547 weakly similar to UP|Q75IX4 (Q75IX4) Expressed protein,...    32  0.42
CO983198                                                               32  0.42
CA936097                                                               31  1.2
TC214572 homologue to UP|TBA3_ARATH (P20363) Tubulin alpha-3/alp...    30  2.7
BE058237                                                               28  6.0
TC206452 similar to UP|CBPY_YEAST (P00729) Carboxypeptidase Y pr...    28  6.0
TC222319 UP|Q39833 (Q39833) Alfa-carboxyltransferase precursor (...    28  7.8
CK606659                                                               28  7.8

>TC208526 similar to UP|Q6YW97 (Q6YW97) MAP3K protein kinase-like protein,
           partial (59%)
          Length = 1214

 Score =  328 bits (841), Expect = 3e-90
 Identities = 149/232 (64%), Positives = 184/232 (79%)
 Frame = +2

Query: 129 LDLYDFENDVWLCHSFGGQCYNYTAFQPAINVLKEIQVFLEANPSEIVTIIIEDYVTSPK 188
           LD+YDF+ND+WLCHSF GQCYN+TAFQPA+N LKE++ FL  NP+EIVTIIIEDYV +PK
Sbjct: 23  LDMYDFQNDIWLCHSFRGQCYNFTAFQPAVNTLKEVEAFLTENPTEIVTIIIEDYVHTPK 202

Query: 189 GLTKVFDAAGLRKYWFPVSRMPKNGGDWPKVDDMVQKNQRLVVFTSKASKEASEGIAYEW 248
           GLT VF +AGL KYWFPVS+MPK G DWP V +MVQ N RLVVFTS ASKEA EGIAY+W
Sbjct: 203 GLTNVFTSAGLDKYWFPVSKMPKKGDDWPTVTEMVQANHRLVVFTSDASKEAGEGIAYQW 382

Query: 249 RYLVENQYGNGGMKAGSCPNRAESPSMNTTSRSLVLVNFFRDLPDVAQSCKDNSAPLLSM 308
           +++VEN+ G+ G++ GSCP+R ES ++N+ S SL L+N+F   P  A SCK++SAPL  M
Sbjct: 383 KHMVENESGDPGVQQGSCPHRKESKALNSKSHSLFLMNYFPTYPVEADSCKEHSAPLAEM 562

Query: 309 VSTCNQAAGKRWPNFIAVDFYKRSDGGGAPEAVDVANGHLVCGCGNIATCKV 360
           V+TC +AAG   PNFIAV+FY RSDGGG  + VD  NGH +CGC  +  C+V
Sbjct: 563 VNTCYKAAGNLMPNFIAVNFYMRSDGGGVFDIVDKMNGHTLCGCSTVTACQV 718


>CO985741 
          Length = 761

 Score =  193 bits (490), Expect = 1e-49
 Identities = 92/138 (66%), Positives = 108/138 (77%), Gaps = 7/138 (5%)
 Frame = -1

Query: 242 EGIAYEWRYLVENQYGNGGMKAGSCPNRAESPSMNTTSRSLVLVNFFRDLPDVAQSCKDN 301
           EGIAY+W Y+VENQYG+ GMKAGSCP+RAESP+MNT SRSLVLVN+F   P+ +Q+C DN
Sbjct: 761 EGIAYQWTYVVENQYGDDGMKAGSCPSRAESPAMNTKSRSLVLVNYFHSAPNRSQACADN 582

Query: 302 SAPLLSMVSTCNQAAGKRWPNFIAVDFYKRSDGGGAPEAVDVANGHLVCGCGNIATCKVR 361
           SAPLL M+ TC++AAG RW NFIAVD+Y+RSDGGGAP AVD ANGHL CGC NIA CK  
Sbjct: 581 SAPLLDMMKTCHEAAGNRWANFIAVDYYQRSDGGGAPLAVDEANGHLTCGCDNIAYCKEN 402

Query: 362 -------LTPITFIPPHT 372
                  + PI+  PP T
Sbjct: 401 AKSGTCDVPPISPPPPAT 348


>BM731623 weakly similar to PIR|D85436|D854 MAP3K-like protein kinase
           [imported] - Arabidopsis thaliana, partial (4%)
          Length = 422

 Score = 60.8 bits (146), Expect = 1e-09
 Identities = 32/67 (47%), Positives = 41/67 (60%)
 Frame = +2

Query: 8   LAIATTLFTILVLLDSSLALKFKPLQQEGQICVANKNCNSGLHCETCVTNGNVRPRCTRT 67
           L IA  LFT      SS A K       G+ C ++  C++GL C+TC  NGN RPRC+RT
Sbjct: 257 LLIAVCLFT------SSSASKI------GENCGSDNKCDAGLSCQTCPANGNTRPRCSRT 400

Query: 68  QPINPTS 74
           QP++PTS
Sbjct: 401 QPLSPTS 421


>BU577276 
          Length = 428

 Score = 50.1 bits (118), Expect = 2e-06
 Identities = 31/77 (40%), Positives = 40/77 (51%)
 Frame = +2

Query: 9   AIATTLFTILVLLDSSLALKFKPLQQEGQICVANKNCNSGLHCETCVTNGNVRPRCTRTQ 68
           A A  +  +LV L  SL+       Q  + C A  +C  GL C  C + G  +P CTR Q
Sbjct: 200 APANAIIFLLVPLLCSLSF-INVNSQILEACSAATDCGPGLFCGNCPSLGLKQPICTRGQ 376

Query: 69  PINPTSKVKGLPFNRYS 85
              PTS V GLPFN+Y+
Sbjct: 377 VTLPTSIVNGLPFNKYT 427


>BQ298007 weakly similar to PIR|T47442|T47 disease resistance protein homlog
           - Arabidopsis thaliana, partial (2%)
          Length = 367

 Score = 38.5 bits (88), Expect = 0.006
 Identities = 19/43 (44%), Positives = 22/43 (50%)
 Frame = +1

Query: 37  QICVANKNCNSGLHCETCVTNGNVRPRCTRTQPINPTSKVKGL 79
           + C A  +C  GL C  C   G  +P CTR Q   PTS V GL
Sbjct: 238 EACSAATDCGPGLFCGNCPALGLKQPICTRGQATLPTSIVNGL 366


>TC213924 
          Length = 380

 Score = 32.7 bits (73), Expect = 0.32
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = +1

Query: 336 GAPEAVDVANGHLVCGCGNIATC 358
           G+ +AVD  NG L+CGC ++ TC
Sbjct: 7   GSFQAVDTLNGKLLCGCDDVHTC 75


>TC232874 weakly similar to UP|O04020 (O04020) F7G19.3 protein, partial (32%)
          Length = 715

 Score = 32.3 bits (72), Expect = 0.42
 Identities = 17/47 (36%), Positives = 22/47 (46%)
 Frame = +1

Query: 333 DGGGAPEAVDVANGHLVCGCGNIATCKVRLTPITFIPPHTHLNLHVL 379
           DGGG  +     NGH +C    +AT  V  T    +PP  H   H+L
Sbjct: 370 DGGGQWDRHGGVNGHCICTGSQVATASV--TGAAGVPPSCHWLQHIL 504


>TC203547 weakly similar to UP|Q75IX4 (Q75IX4) Expressed protein, partial
           (6%)
          Length = 302

 Score = 32.3 bits (72), Expect = 0.42
 Identities = 14/26 (53%), Positives = 18/26 (68%)
 Frame = +3

Query: 292 PDVAQSCKDNSAPLLSMVSTCNQAAG 317
           P  A SCK++  PL  MV+TC +AAG
Sbjct: 27  PVEADSCKEHLVPLADMVNTCYKAAG 104


>CO983198 
          Length = 736

 Score = 32.3 bits (72), Expect = 0.42
 Identities = 14/26 (53%), Positives = 18/26 (68%)
 Frame = -1

Query: 292 PDVAQSCKDNSAPLLSMVSTCNQAAG 317
           P  A SCK++  PL  MV+TC +AAG
Sbjct: 178 PVEADSCKEHLVPLADMVNTCYKAAG 101


>CA936097 
          Length = 426

 Score = 30.8 bits (68), Expect = 1.2
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = +2

Query: 120 LNNGVRGLMLDLYDFENDVWLCHSFGGQCYNYTAFQPAINVLK 162
           L NGVR + +DL     +   CHSF   C+ ++ ++  +N L+
Sbjct: 104 LRNGVRRVTVDLLQVMANY*TCHSFFFLCWTFSLYR*PLNTLQ 232


>TC214572 homologue to UP|TBA3_ARATH (P20363) Tubulin alpha-3/alpha-5 chain,
           partial (57%)
          Length = 961

 Score = 29.6 bits (65), Expect = 2.7
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 5/41 (12%)
 Frame = +1

Query: 368 IPPHTHLNLHVLN-----FDLCRKTWDLEHVNYLKLKQLLN 403
           IP H H ++ VL      +D+CR++ D+E   Y  L +L++
Sbjct: 1   IPLHEHTDVVVLLDNEAIYDICRRSLDIERPTYTNLNRLIS 123


>BE058237 
          Length = 413

 Score = 28.5 bits (62), Expect = 6.0
 Identities = 13/31 (41%), Positives = 20/31 (63%)
 Frame = -2

Query: 300 DNSAPLLSMVSTCNQAAGKRWPNFIAVDFYK 330
           +NS  L+ M+ TC+ A      N++AVD+YK
Sbjct: 376 NNSGGLIDMLQTCHGA------NYVAVDYYK 302


>TC206452 similar to UP|CBPY_YEAST (P00729) Carboxypeptidase Y precursor
           (Carboxypeptidase YSCY) , partial (5%)
          Length = 1330

 Score = 28.5 bits (62), Expect = 6.0
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +1

Query: 45  CNSGLHCETCVTNGNVRPRCTRTQPINPTSKVKGLPFNRYSWLT 88
           C   L   T V  GN+ P    TQP N T+ ++     RY W++
Sbjct: 412 CMQALRVAT-VEQGNIDPYSVYTQPCNNTASLRRGLKGRYPWMS 540


>TC222319 UP|Q39833 (Q39833) Alfa-carboxyltransferase precursor (Carboxyl
            transferase alpha subunit)  , complete
          Length = 2588

 Score = 28.1 bits (61), Expect = 7.8
 Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 8/59 (13%)
 Frame = -3

Query: 263  AGSCPNRAESPSMNTTSRSLVL------VNFFRDLP--DVAQSCKDNSAPLLSMVSTCN 313
            + SC N   S S+  + RSL L      VN F  LP    A+SC  NS    S++S  N
Sbjct: 2040 SNSCLNVTASLSLFASDRSLTLHNSLR*VNLFCSLP*LGAARSCCSNSTLSFSILSFSN 1864


>CK606659 
          Length = 443

 Score = 28.1 bits (61), Expect = 7.8
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = -1

Query: 65  TRTQPINPTSKVKGLPFNRYSWLTTHNSFALLGQKSM 101
           TR   INP S V  +PF    W TT  S   +G+K M
Sbjct: 311 TRIWRINPRSTVMYVPFVWIMWGTTAASMYAMGRKVM 201


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.321    0.136    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,054,815
Number of Sequences: 63676
Number of extensions: 318351
Number of successful extensions: 1572
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 1564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1572
length of query: 425
length of database: 12,639,632
effective HSP length: 100
effective length of query: 325
effective length of database: 6,272,032
effective search space: 2038410400
effective search space used: 2038410400
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)