TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0226.9
         (223 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BU081086 weakly similar to GP|27817864|db OJ1081_B12.13 {Oryza s...   125  1e-29
TC224067                                                               44  6e-05
TC212860 weakly similar to UP|PIF1_YEAST (P07271) DNA repair and...    42  3e-04
TC215239 UP|H3_PEA (P02300) Histone H3, partial (39%)                  35  0.035
CD401675 similar to GP|25073695|gb NMDA receptor subunit NR2B {A...    27  5.6

>BU081086 weakly similar to GP|27817864|db OJ1081_B12.13 {Oryza sativa
           (japonica cultivar-group)}, partial (7%)
          Length = 426

 Score =  125 bits (315), Expect = 1e-29
 Identities = 66/141 (46%), Positives = 88/141 (61%)
 Frame = +2

Query: 41  SDSALRSDEDSEIKVEWFTTEFSNDTKSSGMPNHQLLLKVGTPIMLLRNIDQAASLCNGT 100
           SDS  +SD          TTEF N   +S +PNH++ LKV + IMLLRN+DQ   LCN T
Sbjct: 2   SDSIEKSDTIESEGFSTITTEFINSLSTSRLPNHKIKLKVDSRIMLLRNLDQNEGLCNST 181

Query: 101 RLIVDELGERFIGATVITGTNVNDKVHILRMDLVLSDSKFPIKFRIRQFPIAICFAMTIN 160
           RLI+    +  I A +++G    + V+I R+    S S +P K   R+FPI + +AMTIN
Sbjct: 182 RLIITMFADHIIEAKIMSGKGQGNTVYIPRLATSPSQSPWPFKLIRRKFPIIVSYAMTIN 361

Query: 161 KSQGQTLSQVGLFLPRPVFTH 181
           KSQGQ L+ VGL+LP PVF+H
Sbjct: 362 KSQGQLLASVGLYLPTPVFSH 424


>TC224067 
          Length = 415

 Score = 43.9 bits (102), Expect = 6e-05
 Identities = 26/50 (52%), Positives = 34/50 (68%), Gaps = 2/50 (4%)
 Frame = -2

Query: 144 FRIRQFPIAICFAMTINKSQGQTLSQV-GLFLPRPV-FTHGQLYVALSRV 191
           F+ +     +C+ M INKS GQTLSQV G+ LPRP   +HGQ YV L++V
Sbjct: 387 FKFQDVNSLVCYTMKINKSHGQTLSQVGGVLLPRPN**SHGQ-YVTLNQV 241


>TC212860 weakly similar to UP|PIF1_YEAST (P07271) DNA repair and
           recombination protein PIF1, mitochondrial precursor,
           partial (8%)
          Length = 596

 Score = 41.6 bits (96), Expect = 3e-04
 Identities = 25/45 (55%), Positives = 31/45 (68%)
 Frame = +2

Query: 155 FAMTINKSQGQTLSQVGLFLPRPVFTHGQLYVALSRVRSRKGLKL 199
           +AM+I+K QG TL +V   L R  F  G +YVALSRVRS +GL L
Sbjct: 5   WAMSIHKCQGMTLERVHTDLSR-AFGCGMVYVALSRVRSLEGLHL 136


>TC215239 UP|H3_PEA (P02300) Histone H3, partial (39%)
          Length = 340

 Score = 34.7 bits (78), Expect = 0.035
 Identities = 13/18 (72%), Positives = 16/18 (88%)
 Frame = -3

Query: 149 FPIAICFAMTINKSQGQT 166
           FP+ +CFAMT NKS+GQT
Sbjct: 326 FPLIVCFAMTTNKSEGQT 273


>CD401675 similar to GP|25073695|gb NMDA receptor subunit NR2B {Apteronotus
           leptorhynchus}, partial (1%)
          Length = 338

 Score = 27.3 bits (59), Expect = 5.6
 Identities = 10/36 (27%), Positives = 18/36 (49%)
 Frame = +2

Query: 142 IKFRIRQFPIAICFAMTINKSQGQTLSQVGLFLPRP 177
           + F    FP ++CF+   + S   +++   L L RP
Sbjct: 203 LSFNFHSFPKSLCFSYASSSSSSSSVAAAALLLHRP 310


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.322    0.137    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,276,660
Number of Sequences: 63676
Number of extensions: 97700
Number of successful extensions: 372
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 371
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 372
length of query: 223
length of database: 12,639,632
effective HSP length: 94
effective length of query: 129
effective length of database: 6,654,088
effective search space: 858377352
effective search space used: 858377352
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)