BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0226.8
(518 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC208420 homologue to UP|Q7XXR9 (Q7XXR9) Katanin, partial (79%) 275 5e-74
TC204690 homologue to UP|Q9SEA8 (Q9SEA8) Salt-induced AAA-Type A... 270 1e-72
TC204689 homologue to UP|Q9SEA8 (Q9SEA8) Salt-induced AAA-Type A... 269 2e-72
BF324910 homologue to GP|19909896|db katanin {Arabidopsis thalia... 266 2e-71
TC231817 homologue to UP|Q7XJI9 (Q7XJI9) Katanin, partial (21%) 229 2e-60
TC216249 weakly similar to UP|SAP1_YEAST (P39955) SAP1 protein, ... 215 3e-56
TC204915 weakly similar to GB|AAH46286.1|28279482|BC046286 spast... 215 3e-56
TC204913 weakly similar to UP|SAP1_YEAST (P39955) SAP1 protein, ... 214 6e-56
TC219888 similar to UP|Q944N4 (Q944N4) Tobacco mosaic virus heli... 212 3e-55
TC206370 similar to UP|Q940D1 (Q940D1) At1g64110/F22C12_22, part... 207 9e-54
TC206116 UP|CC48_SOYBN (P54774) Cell division cycle protein 48 h... 199 3e-51
TC216546 weakly similar to UP|SAP1_YEAST (P39955) SAP1 protein, ... 191 9e-49
TC232030 homologue to UP|Q6WG31 (Q6WG31) Katanin-like protein, p... 168 2e-43
TC229555 similar to GB|AAM62497.1|21553404|AY085265 26S proteaso... 172 3e-43
TC211718 homologue to UP|Q6WG31 (Q6WG31) Katanin-like protein, p... 163 1e-40
TC225592 homologue to GB|AAP78936.1|32306505|BT009668 At5g19990 ... 161 7e-40
TC225681 homologue to UP|Q9SZD4 (Q9SZD4) 26S proteasome subunit ... 153 2e-37
TC225683 homologue to UP|Q9SZD4 (Q9SZD4) 26S proteasome subunit ... 153 2e-37
TC214213 homologue to UP|PRSA_BRACM (O23894) 26S protease regula... 152 3e-37
BG405651 similar to GP|19909896|db katanin {Arabidopsis thaliana... 152 3e-37
>TC208420 homologue to UP|Q7XXR9 (Q7XXR9) Katanin, partial (79%)
Length = 1523
Score = 275 bits (702), Expect = 5e-74
Identities = 143/324 (44%), Positives = 214/324 (65%), Gaps = 2/324 (0%)
Frame = +1
Query: 196 ISDAEESKSKKSQYEGPDPE-LAEMLERDVLETSPGVRWEDVAGLTEAKRLLEEAVVLPL 254
I D KS +E + LAE L RD++ SP V+WE + GL AKRLL+EAVV+P+
Sbjct: 346 IVDERPQKSLLPPFESAEMRALAESLSRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPI 525
Query: 255 WMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERM 314
P+YF G+ PWKG+L+FGPPGTGKT+LAKAVATEC TTFFN+S++++ SKWRG+SE++
Sbjct: 526 KYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKL 705
Query: 315 VRCLFDLARAYAPSTIFIDEIDSLCNSRG-ASGEHESSRRVKSELLVQVDGVSNTATNED 373
V+ LF+LAR +APSTIF+DEID++ + RG A EHE+SRR+K+ELL+Q+DG++ T
Sbjct: 706 VKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTKT----- 870
Query: 374 GSRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIRINLKTVEVAPDVNID 433
++V VLAATN PW++D A+ RRLEKRI +PLP +R+ + L + D
Sbjct: 871 --DELVFVLAATNLPWELDAAMLRRLEKRILVPLPEPVARRAMFEELLPQQPDEEPIPYD 1044
Query: 434 EVARRTDGYSGDDLTNVCRDASLNGMRRKIAGKTRDEIKNMSKDDISKDPVAMCDFEEAL 493
+ +T+GYSG D+ +C++ ++ +RR ++ + + ++ P+ D E AL
Sbjct: 1045ILVDKTEGYSGSDIRLLCKETAMQPLRRLMSQLEQSQDVVPEEELPKVGPIKSEDIETAL 1224
Query: 494 VKVQRSVSQADIERHEKWFHEFGS 517
+ R + +++K+ ++GS
Sbjct: 1225-RNTRPSAHLHAHKYDKFNADYGS 1293
>TC204690 homologue to UP|Q9SEA8 (Q9SEA8) Salt-induced AAA-Type ATPase,
partial (94%)
Length = 1630
Score = 270 bits (690), Expect = 1e-72
Identities = 146/363 (40%), Positives = 225/363 (61%), Gaps = 30/363 (8%)
Frame = +2
Query: 184 GVSGKAGKTDSVISDAEESKSKKS--QYEGPDPELAEM---LERDVLETSPGVRWEDVAG 238
G SG A D+ ++ ++K K +G DPE A++ L ++ P V+W DVAG
Sbjct: 359 GPSGPASSGDAAVATRPKTKPKDGGKDGDGEDPEQAKLRAGLNSAIVREKPNVKWNDVAG 538
Query: 239 LTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNV 298
L AK+ L+EAV+LP+ P++F G RRPW+ L++GPPGTGK+ LAKAVATE +TFF+V
Sbjct: 539 LESAKQALQEAVILPVKFPQFFTGKRRPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSV 718
Query: 299 SSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNSRGASGEHESSRRVKSEL 358
SS+ L SKW GESE++V LF +AR APS IF+DEIDSLC RG E E+SRR+K+EL
Sbjct: 719 SSSDLVSKWMGESEKLVSNLFQMARESAPSIIFVDEIDSLCGQRGEGNESEASRRIKTEL 898
Query: 359 LVQVDGVSNTATNEDGSRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIR 418
LVQ+ GV + + + V+VLAATN P+ +D+A+RRR +KRIYIPLP+ ++R+ + +
Sbjct: 899 LVQMQGVGH-------NDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFK 1057
Query: 419 INL-KTVEVAPDVNIDEVARRTDGYSGDDLTNVCRDASLNGMRR---------------- 461
++L T + + + +AR+T+G+SG D++ +D +R+
Sbjct: 1058VHLGDTPHNLAESDFEHLARKTEGFSGSDISVCVKDVLFEPVRKTQDAMFFFRNPEDMWI 1237
Query: 462 KIAGKTRDEIKNMSKDDISK--------DPVAMCDFEEALVKVQRSVSQADIERHEKWFH 513
K + ++ +D +K P++ DF++ L + + +VS++D++ HE++
Sbjct: 1238PCGPKQQSAVQTTMQDLAAKGLASKILPPPISRTDFDKVLARQRPTVSKSDLDVHERFTK 1417
Query: 514 EFG 516
EFG
Sbjct: 1418EFG 1426
>TC204689 homologue to UP|Q9SEA8 (Q9SEA8) Salt-induced AAA-Type ATPase,
partial (98%)
Length = 1726
Score = 269 bits (688), Expect = 2e-72
Identities = 147/363 (40%), Positives = 225/363 (61%), Gaps = 30/363 (8%)
Frame = +3
Query: 184 GVSGKAGKTDSVISDAEESKSKKSQY--EGPDPELAEM---LERDVLETSPGVRWEDVAG 238
G G A D+ ++ ++K K + +G DPE A++ L ++ P V+W DVAG
Sbjct: 408 GGPGPASNGDAAVAARPKTKPKDGEGGGDGEDPEQAKLRAGLNSAIIREKPNVKWNDVAG 587
Query: 239 LTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNV 298
L AK+ L+EAV+LP+ P++F G RRPW+ L++GPPGTGK+ LAKAVATE +TFF+V
Sbjct: 588 LESAKQALQEAVILPVKFPQFFTGKRRPWRAFLLYGPPGTGKSYLAKAVATEAESTFFSV 767
Query: 299 SSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNSRGASGEHESSRRVKSEL 358
SS+ L SKW GESE++V LF++AR APS IFIDEIDSLC RG E E+SRR+K+EL
Sbjct: 768 SSSDLVSKWMGESEKLVSNLFEMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTEL 947
Query: 359 LVQVDGVSNTATNEDGSRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIR 418
LVQ+ GV + + + V+VLAATN P+ +D+A+RRR +KRIYIPLP+ ++R+ + +
Sbjct: 948 LVQMQGVGH-------NDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFK 1106
Query: 419 INL-KTVEVAPDVNIDEVARRTDGYSGDDLTNVCRDASLNGMRR---------------- 461
++L T + + + +A RT+G+SG D++ +D +R+
Sbjct: 1107VHLGDTPHNLTESDFEYLASRTEGFSGSDISVCVKDVLFEPVRKTQDAMFFFKNPEGMWI 1286
Query: 462 ----KIAGKTRDEIKNMSKDDISK----DPVAMCDFEEALVKVQRSVSQADIERHEKWFH 513
K G + ++ ++ ++ P+ DFE+ L + + +VS+AD++ HE++
Sbjct: 1287PCGPKQQGAVQTSMQELAAKGLASKILPPPIRRTDFEKVLARQRPTVSKADLDVHERFTK 1466
Query: 514 EFG 516
EFG
Sbjct: 1467EFG 1475
>BF324910 homologue to GP|19909896|db katanin {Arabidopsis thaliana}, partial
(26%)
Length = 413
Score = 266 bits (680), Expect = 2e-71
Identities = 134/136 (98%), Positives = 136/136 (99%)
Frame = +1
Query: 312 ERMVRCLFDLARAYAPSTIFIDEIDSLCNSRGASGEHESSRRVKSELLVQVDGVSNTATN 371
ERMVRCLFDLARAYAPSTIFIDEIDSLCNSRGASGEHESSRRVKSELLVQVDGVSN+ATN
Sbjct: 4 ERMVRCLFDLARAYAPSTIFIDEIDSLCNSRGASGEHESSRRVKSELLVQVDGVSNSATN 183
Query: 372 EDGSRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIRINLKTVEVAPDVN 431
EDGSRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIRINLKTVEVAPDVN
Sbjct: 184 EDGSRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIRINLKTVEVAPDVN 363
Query: 432 IDEVARRTDGYSGDDL 447
IDEVARRT+GYSGDDL
Sbjct: 364 IDEVARRTEGYSGDDL 411
>TC231817 homologue to UP|Q7XJI9 (Q7XJI9) Katanin, partial (21%)
Length = 430
Score = 229 bits (585), Expect = 2e-60
Identities = 120/143 (83%), Positives = 125/143 (86%), Gaps = 8/143 (5%)
Frame = +2
Query: 172 TGTRASTT-GKKSGV--SGKAGKTDSVIS-----DAEESKSKKSQYEGPDPELAEMLERD 223
+GTRASTT GKK G SGKA KTD+ + DAE+ KSKK QYEGPDPELA MLERD
Sbjct: 2 SGTRASTTTGKKGGAASSGKASKTDTAAAAVTNGDAEDGKSKKLQYEGPDPELAAMLERD 181
Query: 224 VLETSPGVRWEDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLL 283
VLETSPGVRW+DVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPP TGKTLL
Sbjct: 182 VLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPRTGKTLL 361
Query: 284 AKAVATECGTTFFNVSSATLASK 306
AK VATECGTTFFNVSSATLASK
Sbjct: 362 AKTVATECGTTFFNVSSATLASK 430
>TC216249 weakly similar to UP|SAP1_YEAST (P39955) SAP1 protein, partial (14%)
Length = 2222
Score = 215 bits (548), Expect = 3e-56
Identities = 126/334 (37%), Positives = 196/334 (57%), Gaps = 18/334 (5%)
Frame = +2
Query: 201 ESKSKKSQYEG--PDPELAEMLERDVLETSP-GVRWEDVAGLTEAKRLLEEAVVLPLWMP 257
ESKS K + + E + L DV+ S V ++D+ L + K L+E V+LPL P
Sbjct: 857 ESKSLKKSLKDVVTENEFEKRLLADVIPPSDIDVTFDDIGALEKVKDTLKELVMLPLQRP 1036
Query: 258 EYF--QGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMV 315
E F + +P KG+L+FGPPGTGKT+LAKA+ATE G F N+S +++ SKW GE E+ V
Sbjct: 1037 ELFCKGQLTKPCKGILLFGPPGTGKTMLAKAIATEAGANFINISMSSITSKWFGEGEKYV 1216
Query: 316 RCLFDLARAYAPSTIFIDEIDSLCNSRGASGEHESSRRVKSELLVQVDGVSNTATNEDGS 375
+ +F LA +PS IF+DE+DS+ R GEHE+ R++K+E +V DG+ T
Sbjct: 1217 KAVFSLASKISPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKETER--- 1387
Query: 376 RKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIRINLKTVEVAPDVNIDEV 435
V+VLAATN P+D+DEA+ RR+ +R+ + LP+ +R +++++ L E++PDV++D V
Sbjct: 1388 ---VLVLAATNRPFDLDEAVIRRMPRRLMVNLPDAPNRAKILKVILAKEELSPDVDLDAV 1558
Query: 436 ARRTDGYSGDDLTNVCRDASLNGMRRKIAGKTRDEIKNMSKDDISKDPVAMC-------- 487
A TDGYSG DL N+C A+ ++ + + ++ +++ + A+C
Sbjct: 1559 ASMTDGYSGSDLKNLCVTAAHRPIKEILEKEKKERAAALAE---GQPAPALCSSGDVRSL 1729
Query: 488 ---DFEEALVKVQRSVSQADIERHE--KWFHEFG 516
DF+ A +V SVS + E +W +G
Sbjct: 1730 NMEDFKYAHQQVCASVSSESVNMTELLQWNELYG 1831
>TC204915 weakly similar to GB|AAH46286.1|28279482|BC046286 spastic
paraplegia 4 homolog {Mus musculus;} , partial (21%)
Length = 1470
Score = 215 bits (548), Expect = 3e-56
Identities = 126/317 (39%), Positives = 189/317 (58%), Gaps = 15/317 (4%)
Frame = +1
Query: 215 ELAEMLERDVLE-TSPGVRWEDVAGLTEAKRLLEEAVVLPLWMPEYF--QGIRRPWKGVL 271
E + L DV+ T GV ++D+ L K L+E V+LPL PE F + +P KG+L
Sbjct: 220 EFEKKLLADVIPPTDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLAKPCKGIL 399
Query: 272 MFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPSTIF 331
+FGPPGTGKT+LAKAVATE G F N+S +++ SKW GE E+ V+ +F LA APS IF
Sbjct: 400 LFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIF 579
Query: 332 IDEIDSLCNSRGASGEHESSRRVKSELLVQVDGVSNTATNEDGSRKIVMVLAATNFPWDI 391
+DE+DS+ R EHE+ R++K+E +V DG+ ++ V+VLAATN P+D+
Sbjct: 580 VDEVDSMLGRRENPSEHEAMRKMKNEFMVNWDGLRTK------DKERVLVLAATNRPFDL 741
Query: 392 DEALRRRLEKRIYIPLPNFESRKELIRINLKTVEVAPDVNIDEVARRTDGYSGDDLTNVC 451
DEA+ RRL +R+ + LP+ +R++++R+ L ++APDV+ + +A TDGYSG DL N+C
Sbjct: 742 DEAVIRRLPRRLMVNLPDAPNREKILRVILVKEDLAPDVDFEAIANMTDGYSGSDLKNLC 921
Query: 452 RDASLNGMRRKIAGKTRDEIKNMSKD----------DISKDPVAMCDFEEALVKVQRSVS 501
A+ +R + + ++ +S+ DI P+ M DF A +V SVS
Sbjct: 922 VTAAHCPIREILEKEKKERSLALSESKPLPGLCGSGDIR--PLKMDDFRYAHEQVCASVS 1095
Query: 502 QADIERHE--KWFHEFG 516
+E +W +G
Sbjct: 1096SESTNMNELLQWNDLYG 1146
>TC204913 weakly similar to UP|SAP1_YEAST (P39955) SAP1 protein, partial
(14%)
Length = 1080
Score = 214 bits (546), Expect = 6e-56
Identities = 113/260 (43%), Positives = 168/260 (64%), Gaps = 5/260 (1%)
Frame = +3
Query: 201 ESKSKKSQYEG--PDPELAEMLERDVLE-TSPGVRWEDVAGLTEAKRLLEEAVVLPLWMP 257
E+K+ K + + E + L DV+ T GV ++D+ L K L+E V+LPL P
Sbjct: 201 ENKNMKKSLKDVVTENEFEKKLLTDVIPPTDIGVTFDDIGALENVKETLKELVMLPLQRP 380
Query: 258 EYFQG--IRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMV 315
E F + +P KG+L+FGPPGTGKT+LAKAVATE G F N+S +++ SKW GE E+ V
Sbjct: 381 ELFGKGQLAKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYV 560
Query: 316 RCLFDLARAYAPSTIFIDEIDSLCNSRGASGEHESSRRVKSELLVQVDGVSNTATNEDGS 375
+ +F LA APS IF+DE+DS+ R GEHE+ R++K+E +V DG+
Sbjct: 561 KAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK------D 722
Query: 376 RKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIRINLKTVEVAPDVNIDEV 435
++ ++VLAATN P+D+DEA+ RRL +R+ + LP+ +R +++R+ L ++APDV+ + +
Sbjct: 723 KERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRGKIVRVILAKEDLAPDVDFEAI 902
Query: 436 ARRTDGYSGDDLTNVCRDAS 455
A TDGYSG DL N+C A+
Sbjct: 903 ANMTDGYSGSDLKNLCVTAA 962
>TC219888 similar to UP|Q944N4 (Q944N4) Tobacco mosaic virus helicase
domain-binding protein (Fragment), partial (50%)
Length = 1119
Score = 212 bits (540), Expect = 3e-55
Identities = 121/281 (43%), Positives = 187/281 (66%), Gaps = 4/281 (1%)
Frame = +3
Query: 241 EAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSS 300
+AK+ L E V+LP + F G+RRP +G+L+FGPPG GKT+LAKAVA+E TFFNV++
Sbjct: 6 KAKQALMEMVILPTKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVTA 185
Query: 301 ATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNSRGASGEHESSRRVKSELLV 360
A+L SKW GE+E++VR LF +A + PS IFIDEIDS+ ++R A+ E+++SRR+KSE L+
Sbjct: 186 ASLTSKWVGEAEKLVRTLFMVAISRQPSVIFIDEIDSIMSTRLAN-ENDASRRLKSEFLI 362
Query: 361 QVDGVSNTATNEDGSRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIRIN 420
Q DGV+ +N D IV+V+ ATN P ++D+A+ RRL KRIYIPLP+ RK L++
Sbjct: 363 QFDGVT---SNPD---DIVIVIGATNKPQELDDAVLRRLVKRIYIPLPDENVRKLLLKHK 524
Query: 421 LKTVEVA-PDVNIDEVARRTDGYSGDDLTNVCRDASLNGMRR---KIAGKTRDEIKNMSK 476
LK + P +++ + + T+GYSG DL +C +A++ +R I ++++ +
Sbjct: 525 LKGQAFSLPSRDLERLVKETEGYSGSDLQALCEEAAMMPIRELGADILTVKANQVRGLRY 704
Query: 477 DDISKDPVAMCDFEEALVKVQRSVSQADIERHEKWFHEFGS 517
+ DF++A+ ++ S++++ E E+W EFGS
Sbjct: 705 E----------DFKKAMATIRPSLNKSKWEELERWNEEFGS 797
>TC206370 similar to UP|Q940D1 (Q940D1) At1g64110/F22C12_22, partial (38%)
Length = 1502
Score = 207 bits (527), Expect = 9e-54
Identities = 120/289 (41%), Positives = 173/289 (59%), Gaps = 19/289 (6%)
Frame = +2
Query: 230 GVRWEDVAGLTEAKRLLEEAVVLPLWMPEYFQG-IRRPWKGVLMFGPPGTGKTLLAKAVA 288
GV + D+ L E K L+E V+LPL P+ F+G + +P +G+L+FGPPGTGKT+LAKA+A
Sbjct: 50 GVTFADIGALDEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIA 229
Query: 289 TECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNSRGASGEH 348
E G +F NVS +T+ SKW GE E+ VR LF LA AP+ IF+DE+DS+ R GEH
Sbjct: 230 NEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVAPTIIFVDEVDSMLGQRTRVGEH 409
Query: 349 ESSRRVKSELLVQVDGVSNTATNEDGSRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLP 408
E+ R++K+E + DG+ T NE ++VLAATN P+D+DEA+ RR E+RI + LP
Sbjct: 410 EAMRKIKNEFMTHWDGLL-TGPNEQ-----ILVLAATNRPFDLDEAIIRRFERRILVGLP 571
Query: 409 NFESRKELIRINLKTVEVAPDVNIDEVARRTDGYSGDDLTNVCRDASLNGMRR------- 461
+ E+R E+I L E +++ E+A T+GY+G DL N+C A+ +R
Sbjct: 572 SVENR-EMILKTLLAKEKHENLDFKELATMTEGYTGSDLKNLCITAAYRPVRELIQQERM 748
Query: 462 KIAGKTRDEIKNMSKDDISKD-----------PVAMCDFEEALVKVQRS 499
K K + E + S +D S + P+ M D +A +V S
Sbjct: 749 KDMEKKKREAEGQSSEDASNNKDKEEKEITLRPLNMEDMRQAKTQVAAS 895
>TC206116 UP|CC48_SOYBN (P54774) Cell division cycle protein 48 homolog
(Valosin containing protein homolog) (VCP), complete
Length = 2583
Score = 199 bits (505), Expect = 3e-51
Identities = 118/301 (39%), Positives = 175/301 (57%), Gaps = 13/301 (4%)
Frame = +1
Query: 222 RDVLETSPGVRWEDVAGLTEAKRLLEEAVVLPLWMPEYFQGI-RRPWKGVLMFGPPGTGK 280
R+ + P V WED+ GL KR L+E V P+ PE F+ P KGVL +GPPG GK
Sbjct: 1426 RETVVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGK 1605
Query: 281 TLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCN 340
TLLAKA+A EC F +V L + W GESE VR +FD AR AP +F DE+DS+
Sbjct: 1606 TLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIAT 1785
Query: 341 SRGAS--GEHESSRRVKSELLVQVDGVSNTATNEDGSRKIVMVLAATNFPWDIDEALRR- 397
RG+S ++ RV ++LL ++DG+S ++K V ++ ATN P ID AL R
Sbjct: 1786 QRGSSVGDAGGAADRVLNQLLTEMDGMS--------AKKTVFIIGATNRPDIIDPALLRP 1941
Query: 398 -RLEKRIYIPLPNFESRKELIRINLKTVEVAPDVNIDEVARRTDGYSGDDLTNVCRDASL 456
RL++ IYIPLP+ +SR ++ + L+ +A +V++ +AR T G+SG D+T +C+ A
Sbjct: 1942 GRLDQLIYIPLPDEDSRHQIFKACLRKSPIAKNVDLRALARHTQGFSGADITEICQRACK 2121
Query: 457 NGMRRKI------AGKTRDEIKNMSKDDISKD--PVAMCDFEEALVKVQRSVSQADIERH 508
+R I K+R+ + M +D + + + FEE++ +RSVS ADI ++
Sbjct: 2122 YAIRENIEKDIERERKSRENPEAMDEDTVDDEVAEIKAAHFEESMKFARRSVSDADIRKY 2301
Query: 509 E 509
+
Sbjct: 2302 Q 2304
Score = 170 bits (430), Expect = 2e-42
Identities = 105/258 (40%), Positives = 156/258 (59%), Gaps = 6/258 (2%)
Frame = +1
Query: 212 PDPEL---AEMLERDVLETSPGVRWEDVAGLTEAKRLLEEAVVLPLWMPEYFQGIR-RPW 267
PD E+ E L+R+ E V ++DV G+ + + E V LPL P+ F+ I +P
Sbjct: 568 PDTEIFCEGEPLKREDEERLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPP 747
Query: 268 KGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAP 327
KG+L++GPPG+GKTL+A+AVA E G FF ++ + SK GESE +R F+ A AP
Sbjct: 748 KGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAP 927
Query: 328 STIFIDEIDSLCNSRGASGEHESSRRVKSELLVQVDGVSNTATNEDGSRKIVMVLAATNF 387
S IFIDEIDS+ R + E RR+ S+LL +DG+ SR V+V+ ATN
Sbjct: 928 SIIFIDEIDSIAPKREKT-HGEVERRIVSQLLTLMDGLK--------SRAHVIVIGATNR 1080
Query: 388 PWDIDEALRR--RLEKRIYIPLPNFESRKELIRINLKTVEVAPDVNIDEVARRTDGYSGD 445
P ID ALRR R ++ I I +P+ R E++RI+ K ++++ DV+++ +A+ T GY G
Sbjct: 1081PNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGA 1260
Query: 446 DLTNVCRDASLNGMRRKI 463
DL +C +A+L +R K+
Sbjct: 1261DLAALCTEAALQCIREKM 1314
>TC216546 weakly similar to UP|SAP1_YEAST (P39955) SAP1 protein, partial
(14%)
Length = 1321
Score = 191 bits (484), Expect = 9e-49
Identities = 105/263 (39%), Positives = 162/263 (60%), Gaps = 12/263 (4%)
Frame = +3
Query: 266 PWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAY 325
P KG+L+FGPPGTGKT+LAKAVATE G F N+S +++ SKW GE E+ V+ +F LA
Sbjct: 138 PCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKI 317
Query: 326 APSTIFIDEIDSLCNSRGASGEHESSRRVKSELLVQVDGVSNTATNEDGSRKIVMVLAAT 385
APS IF+DE+DS+ R GEHE+ R++K+E +V DG+ T V+VLAAT
Sbjct: 318 APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTER------VLVLAAT 479
Query: 386 NFPWDIDEALRRRLEKRIYIPLPNFESRKELIRINLKTVEVAPDVNIDEVARRTDGYSGD 445
N P+D+DEA+ RRL +R+ + LP+ +R +++++ L+ +++ D+++D +A TDGYSG
Sbjct: 480 NRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILKVILEKEDLSSDIDMDAIASMTDGYSGS 659
Query: 446 DLTNVCRDASLNGMRRKIAGKTRDEIKNMSK----------DDISKDPVAMCDFEEALVK 495
DL N+C A+ ++ + + +++ +S+ DI + M DF+ A +
Sbjct: 660 DLKNLCVTAAHRPIKEILEKEKKEQAAAVSEGRPAPALSGSGDIRS--LNMEDFKYAHQQ 833
Query: 496 VQRSVSQADIERHE--KWFHEFG 516
V SVS I E +W +G
Sbjct: 834 VCASVSSESINMTELQQWNELYG 902
>TC232030 homologue to UP|Q6WG31 (Q6WG31) Katanin-like protein, partial (20%)
Length = 613
Score = 168 bits (426), Expect(2) = 2e-43
Identities = 83/87 (95%), Positives = 84/87 (96%)
Frame = +1
Query: 432 IDEVARRTDGYSGDDLTNVCRDASLNGMRRKIAGKTRDEIKNMSKDDISKDPVAMCDFEE 491
IDEVARRT+GYSGDDLTNVCRDASLNGMRRKIAGKTRDEIKNMSKDDISKDPVA CDFEE
Sbjct: 85 IDEVARRTEGYSGDDLTNVCRDASLNGMRRKIAGKTRDEIKNMSKDDISKDPVAKCDFEE 264
Query: 492 ALVKVQRSVSQADIERHEKWFHEFGSA 518
AL KVQRSVSQADIERHEKWF EFGSA
Sbjct: 265 ALRKVQRSVSQADIERHEKWFTEFGSA 345
Score = 26.2 bits (56), Expect(2) = 2e-43
Identities = 12/16 (75%), Positives = 12/16 (75%)
Frame = +2
Query: 402 RIYIPLPNFESRKELI 417
RIY PN ESRKELI
Sbjct: 2 RIYXXXPNXESRKELI 49
>TC229555 similar to GB|AAM62497.1|21553404|AY085265 26S proteasome
regulatory particle chain RPT6-like protein {Arabidopsis
thaliana;} , partial (85%)
Length = 1155
Score = 172 bits (436), Expect = 3e-43
Identities = 108/316 (34%), Positives = 173/316 (54%), Gaps = 17/316 (5%)
Frame = +2
Query: 201 ESKSKKSQYEGPDPELAEMLERDVLETSP---------------GVRWEDVAGLTEAKRL 245
ES K +++ E+A+ L R +++T+P V + + GL K+
Sbjct: 107 ESSKKALEHK---KEIAKRLGRPLIQTNPYEDVIACDIINPDHIDVEFNSIGGLETIKQA 277
Query: 246 LEEAVVLPLWMPEYFQG--IRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATL 303
L E V+LPL P+ F + P KGVL++GPPGTGKT+LAKA+A E F NV + L
Sbjct: 278 LFELVILPLKRPDLFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESRAVFINVRISNL 457
Query: 304 ASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNSRGASGEHESSRRVKSELLVQVD 363
SKW G+++++V +F LA P+ IFIDE+DS R + +HE+ +K+E + D
Sbjct: 458 MSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGKRRGT-DHEAMLNMKTEFMALWD 634
Query: 364 GVSNTATNEDGSRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIRINLKT 423
G + + VMVLAATN P ++DEA+ RRL + I +P+ R E++++ LK
Sbjct: 635 GFTTDQNAQ------VMVLAATNRPSELDEAILRRLPQAFEIGIPDQRERAEILKVVLKG 796
Query: 424 VEVAPDVNIDEVARRTDGYSGDDLTNVCRDASLNGMRRKIAGKTRDEIKNMSKDDISKDP 483
V +++ +A +GY+G DL ++C+ A+ +R + DE K K + P
Sbjct: 797 ERVEDNIDFGHIAGLCEGYTGSDLFDLCKKAAYFPIRELL-----DEEKK-GKQSHAPRP 958
Query: 484 VAMCDFEEALVKVQRS 499
++ DFE+AL +++
Sbjct: 959 LSQLDFEKALATSKKT 1006
>TC211718 homologue to UP|Q6WG31 (Q6WG31) Katanin-like protein, partial (17%)
Length = 476
Score = 163 bits (413), Expect = 1e-40
Identities = 80/87 (91%), Positives = 83/87 (94%)
Frame = +1
Query: 432 IDEVARRTDGYSGDDLTNVCRDASLNGMRRKIAGKTRDEIKNMSKDDISKDPVAMCDFEE 491
IDEVARRT+GYSGDDLTNVCRDASLNGMRRKIAGKTRDEIKNMSKD+ISKDPVAMCDFE
Sbjct: 1 IDEVARRTEGYSGDDLTNVCRDASLNGMRRKIAGKTRDEIKNMSKDEISKDPVAMCDFEA 180
Query: 492 ALVKVQRSVSQADIERHEKWFHEFGSA 518
AL KVQ SVSQADIERHEKW+ EFGSA
Sbjct: 181 ALKKVQPSVSQADIERHEKWYAEFGSA 261
>TC225592 homologue to GB|AAP78936.1|32306505|BT009668 At5g19990 {Arabidopsis
thaliana;} , partial (94%)
Length = 1612
Score = 161 bits (407), Expect = 7e-40
Identities = 107/304 (35%), Positives = 171/304 (56%), Gaps = 11/304 (3%)
Frame = +3
Query: 225 LETSPGVRWEDVAGLTEAKRLLEEAVVLPLWMPEYFQ--GIRRPWKGVLMFGPPGTGKTL 282
+E P ++ + GL + + ++E + LP+ PE F+ GI +P KGVL++GPPGTGKTL
Sbjct: 552 VEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQP-KGVLLYGPPGTGKTL 728
Query: 283 LAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNSR 342
LA+AVA TF VS + L K+ GE RMVR LF +AR +APS IF+DEIDS+ ++R
Sbjct: 729 LARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSAR 908
Query: 343 GASGEHESS---RRVKSELLVQVDGVSNTATNEDGSRKIVMVLAATNFPWDIDEALRR-- 397
SG +R ELL Q+DG A+N+ + VL ATN +D+AL R
Sbjct: 909 MESGSGNGDSEVQRTMLELLNQLDGFE--ASNK------IKVLMATNRIDILDQALLRPG 1064
Query: 398 RLEKRIYIPLPNFESRKELIRINLKTVEVAPDVNIDEVARRTDGYSGDDLTNVCRDASLN 457
R++++I P PN ESR ++++I+ + + + +++ ++A + +G SG +L VC +A +
Sbjct: 1065RIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMF 1244
Query: 458 GMRRKIAGKTRDEIKNMSKDDISKDPVAMCDFEEALVKVQRSVSQADIERHEKW----FH 513
+R + T++ DFE A+ KV + ++ ++ + W FH
Sbjct: 1245ALRERRVHVTQE------------------DFEMAVAKVMKKETEKNMSLRKLWK*FSFH 1370
Query: 514 EFGS 517
G+
Sbjct: 1371VCGA 1382
>TC225681 homologue to UP|Q9SZD4 (Q9SZD4) 26S proteasome subunit 4-like
protein (26S proteasome subunit AtRPT2a), partial (93%)
Length = 1433
Score = 153 bits (387), Expect = 2e-37
Identities = 98/270 (36%), Positives = 151/270 (55%), Gaps = 5/270 (1%)
Frame = +1
Query: 215 ELAEMLERDVLETSPGVRWEDVAGLTEAKRLLEEAVVLPLWMPEYFQGIR-RPWKGVLMF 273
E+ M+ +E +P + D+ GL + ++EAV LPL PE ++ I +P KGV+++
Sbjct: 412 EVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILY 591
Query: 274 GPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPSTIFID 333
G PGTGKTLLAKAVA TF V + L K+ G+ ++VR LF +A +PS +FID
Sbjct: 592 GEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFID 771
Query: 334 EIDSLCNSR--GASGEHESSRRVKSELLVQVDGVSNTATNEDGSRKIVMVLAATNFPWDI 391
EID++ R SG +R ELL Q+DG SR V V+ ATN +
Sbjct: 772 EIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFD--------SRGDVKVILATNRIESL 927
Query: 392 DEALRR--RLEKRIYIPLPNFESRKELIRINLKTVEVAPDVNIDEVARRTDGYSGDDLTN 449
D AL R R++++I PLP+ ++R+ + +I+ + +A DVN++E D +SG D+
Sbjct: 928 DPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKA 1107
Query: 450 VCRDASLNGMRRKIAGKTRDEIKNMSKDDI 479
+C +A L +R + T + K +KD +
Sbjct: 1108ICTEAGLLALRERRMKVTHADFKK-AKDKV 1194
>TC225683 homologue to UP|Q9SZD4 (Q9SZD4) 26S proteasome subunit 4-like
protein (26S proteasome subunit AtRPT2a), partial (97%)
Length = 1513
Score = 153 bits (387), Expect = 2e-37
Identities = 98/270 (36%), Positives = 151/270 (55%), Gaps = 5/270 (1%)
Frame = +2
Query: 215 ELAEMLERDVLETSPGVRWEDVAGLTEAKRLLEEAVVLPLWMPEYFQGIR-RPWKGVLMF 273
E+ M+ +E +P + D+ GL + ++EAV LPL PE ++ I +P KGV+++
Sbjct: 515 EVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILY 694
Query: 274 GPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPSTIFID 333
G PGTGKTLLAKAVA TF V + L K+ G+ ++VR LF +A +PS +FID
Sbjct: 695 GEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFID 874
Query: 334 EIDSLCNSR--GASGEHESSRRVKSELLVQVDGVSNTATNEDGSRKIVMVLAATNFPWDI 391
EID++ R SG +R ELL Q+DG SR V V+ ATN +
Sbjct: 875 EIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFD--------SRGDVKVILATNRIESL 1030
Query: 392 DEALRR--RLEKRIYIPLPNFESRKELIRINLKTVEVAPDVNIDEVARRTDGYSGDDLTN 449
D AL R R++++I PLP+ ++R+ + +I+ + +A DVN++E D +SG D+
Sbjct: 1031DPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKA 1210
Query: 450 VCRDASLNGMRRKIAGKTRDEIKNMSKDDI 479
+C +A L +R + T + K +KD +
Sbjct: 1211ICTEAGLLALRERRMKVTHADFKK-AKDKV 1297
>TC214213 homologue to UP|PRSA_BRACM (O23894) 26S protease regulatory subunit
6A homolog (TAT-binding protein homolog 1) (TBP-1),
partial (64%)
Length = 1086
Score = 152 bits (385), Expect = 3e-37
Identities = 95/243 (39%), Positives = 143/243 (58%), Gaps = 6/243 (2%)
Frame = +1
Query: 225 LETSPGVRWEDVAGLTEAKRLLEEAVVLPLWMPEYFQGIR-RPWKGVLMFGPPGTGKTLL 283
++ P + D+ GL + + L EA+VLP+ E FQ + RP KGVL++GPPGTGKTL+
Sbjct: 22 VDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLM 201
Query: 284 AKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNSR- 342
A+A A + TF ++ L + G+ ++VR F LA+ +P IFIDEID++ R
Sbjct: 202 ARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRF 381
Query: 343 --GASGEHESSRRVKSELLVQVDGVSNTATNEDGSRKIVMVLAATNFPWDIDEALRR--R 398
SG+ E +R ELL Q+DG S S + V+AATN +D AL R R
Sbjct: 382 DSEVSGDRE-VQRTMLELLNQLDGFS--------SDDRIKVIAATNRADILDPALMRSGR 534
Query: 399 LEKRIYIPLPNFESRKELIRINLKTVEVAPDVNIDEVARRTDGYSGDDLTNVCRDASLNG 458
L+++I P P+ E+R +++I+ + + V PDVN +E+AR TD ++G L VC +A +
Sbjct: 535 LDRKIEFPHPSEEARARILQIHSRKMNVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLA 714
Query: 459 MRR 461
+RR
Sbjct: 715 LRR 723
>BG405651 similar to GP|19909896|db katanin {Arabidopsis thaliana}, partial
(24%)
Length = 401
Score = 152 bits (385), Expect = 3e-37
Identities = 77/78 (98%), Positives = 78/78 (99%)
Frame = +1
Query: 352 RRVKSELLVQVDGVSNTATNEDGSRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFE 411
RRVKSELLVQVDGVSN+ATNEDGSRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFE
Sbjct: 166 RRVKSELLVQVDGVSNSATNEDGSRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFE 345
Query: 412 SRKELIRINLKTVEVAPD 429
SRKELIRINLKTVEVAPD
Sbjct: 346 SRKELIRINLKTVEVAPD 399
Score = 83.2 bits (204), Expect = 3e-16
Identities = 42/57 (73%), Positives = 45/57 (78%), Gaps = 2/57 (3%)
Frame = +3
Query: 130 RRPTRPGQMSTRKS--DGAWARGATPRGGATGRGAKAGATSKVNTGTRASTTGKKSG 184
RRP RPGQ+ RKS DGAWARGAT R GA GRGAKAGAT +VN+GTRASTT K G
Sbjct: 3 RRPARPGQVGARKSAQDGAWARGATARTGAAGRGAKAGATGRVNSGTRASTTTGKKG 173
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.313 0.131 0.380
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,262,002
Number of Sequences: 63676
Number of extensions: 270615
Number of successful extensions: 1865
Number of sequences better than 10.0: 187
Number of HSP's better than 10.0 without gapping: 1659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1788
length of query: 518
length of database: 12,639,632
effective HSP length: 102
effective length of query: 416
effective length of database: 6,144,680
effective search space: 2556186880
effective search space used: 2556186880
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 61 (28.1 bits)
Lotus: description of TM0226.8