BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0224.12
(426 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC220421 weakly similar to UP|GP1_CHLRE (Q9FPQ6) Vegetative cell... 37 0.017
TC224768 similar to UP|Q39835 (Q39835) Extensin, partial (33%) 35 0.084
TC233975 weakly similar to UP|Q9FGH8 (Q9FGH8) Similarity to sort... 34 0.11
TC227415 similar to UP|Q9LVD9 (Q9LVD9) Gb|AAC28507.1, partial (89%) 34 0.14
TC208362 weakly similar to UP|O64835 (O64835) Expressed protein ... 34 0.14
TC213991 similar to UP|Q6H976 (Q6H976) STYLOSA protein, partial ... 33 0.19
CK605939 33 0.19
TC232008 weakly similar to UP|Q9FIH3 (Q9FIH3) Serine/threonine p... 33 0.19
BQ611828 weakly similar to PIR|JE0230|JE02 NADPH-cytochrome P450... 33 0.24
TC224221 weakly similar to UP|Q8V7F2 (Q8V7F2) ORF1 (Fragment), p... 33 0.24
CO985879 33 0.32
TC233121 similar to GB|AAP13385.1|30023704|BT006277 At3g56360 {A... 33 0.32
TC225559 similar to UP|Q9XIV1 (Q9XIV1) Cucumis sativus mRNA expr... 32 0.42
TC209655 similar to UP|Q8L844 (Q8L844) Crp1 protein-like, partia... 32 0.42
TC233834 similar to UP|Q9FGZ0 (Q9FGZ0) Arabidopsis thaliana geno... 32 0.42
TC216776 similar to UP|Q75WV0 (Q75WV0) ALG2-interacting protein ... 32 0.42
BM892538 similar to GP|9759296|dbj| gamma-tubulin interacting pr... 32 0.54
TC228734 weakly similar to UP|Q99738 (Q99738) Pinin, partial (4%) 32 0.54
CA852019 homologue to GP|12697486|em phosphate transporter {Sesb... 32 0.54
BI969707 31 0.93
>TC220421 weakly similar to UP|GP1_CHLRE (Q9FPQ6) Vegetative cell wall
protein gp1 precursor (Hydroxyproline-rich glycoprotein
1), partial (13%)
Length = 1409
Score = 37.0 bits (84), Expect = 0.017
Identities = 33/130 (25%), Positives = 44/130 (33%), Gaps = 6/130 (4%)
Frame = +3
Query: 60 HPGCEPYYTKECRDNLSNFPPQDMQNMPSPAREENVSHDEVQGSEGQEPPIIQPDQVIGL 119
+P P + S PP PS + S S PP
Sbjct: 201 NPSTSPPHRTPAPSPPSTMPPSATPPSPSATSSPSASPTAPPTSPSPSPP--------SS 356
Query: 120 MPPPKADVLVSTHSEPSSRQLQTSPQQPQPSP------QQPRQGARVALSSPHAKGGSAS 173
PP A ST P S TSP PSP P G+ + +SP + +++
Sbjct: 357 PSPPSAPSPSSTAPSPPSASPPTSPSPSPPSPASTASANSPASGSPTSRTSPTSPSPTST 536
Query: 174 SKTAASSHTS 183
SK A S +S
Sbjct: 537 SKPPAPSSSS 566
>TC224768 similar to UP|Q39835 (Q39835) Extensin, partial (33%)
Length = 483
Score = 34.7 bits (78), Expect = 0.084
Identities = 39/146 (26%), Positives = 53/146 (35%), Gaps = 10/146 (6%)
Frame = +3
Query: 19 IALSSSSSSLESSSSSLNSTESDPVWDKLTFYFNSKPIAWQHPGCEPYY----TKECRDN 74
+ L+ S SL S S+ N S P K +Y++S P P +PYY +
Sbjct: 48 LVLAIVSLSLPSQISAHNYLYSSPPPPKKPYYYHSPPPPSPPPPKKPYYYHSPPPPKKPY 227
Query: 75 LSNFPPQDMQNMPSPAREENVSHDEVQGSEGQEPPIIQPDQVIGLMPPPKADVLVSTHSE 134
+ PP + P P ++ H S PP +P PPPK +
Sbjct: 228 YYHSPPP--PSPPPPYKKPYYYHSPPPPS---PPPPKKPYYYHSPPPPPKKPYYYHSPPP 392
Query: 135 PS------SRQLQTSPQQPQPSPQQP 154
PS SP P PSP P
Sbjct: 393 PSPPPPYKKPYHYVSPPPPSPSPPPP 470
>TC233975 weakly similar to UP|Q9FGH8 (Q9FGH8) Similarity to sorting nexin,
partial (15%)
Length = 634
Score = 34.3 bits (77), Expect = 0.11
Identities = 32/98 (32%), Positives = 38/98 (38%), Gaps = 2/98 (2%)
Frame = +1
Query: 87 PSPAREENVSHDEVQGSEGQEPPIIQPDQVIGLMPPPKADVLVSTHSEPSSRQLQTSPQQ 146
P+P R S V PP PD P PK ST P R+ +TSP
Sbjct: 325 PTPTRSSPPSIPTVTTKPSNPPP---PD------PAPKT---TSTSPSPILRRSRTSPPP 468
Query: 147 --PQPSPQQPRQGARVALSSPHAKGGSASSKTAASSHT 182
P P P P R AL+SP+ SS + S T
Sbjct: 469 SSPAPPPSTPTSSPR-ALTSPNMAASVLSSPSGGGSAT 579
>TC227415 similar to UP|Q9LVD9 (Q9LVD9) Gb|AAC28507.1, partial (89%)
Length = 1748
Score = 33.9 bits (76), Expect = 0.14
Identities = 26/81 (32%), Positives = 36/81 (44%), Gaps = 9/81 (11%)
Frame = -2
Query: 79 PPQDMQNMPSPAREENVSHDEVQGSEGQEPPIIQPDQVIGLMPPPKAD---------VLV 129
P + QN+ P + HD + E +EP IQ + + P P+A VL
Sbjct: 1015 PREQNQNLKVPCLQ--AQHDRGRSGELEEP--IQTAKRLPREPLPRAPAPLALHYVHVLS 848
Query: 130 STHSEPSSRQLQTSPQQPQPS 150
+ H P Q Q PQQPQP+
Sbjct: 847 NHHYPPRQAQHQRRPQQPQPN 785
>TC208362 weakly similar to UP|O64835 (O64835) Expressed protein
(At2g23670/F26B6.32), partial (72%)
Length = 805
Score = 33.9 bits (76), Expect = 0.14
Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 4/60 (6%)
Frame = -2
Query: 99 EVQGSEGQEPPIIQPDQVIGLMPPPKADVLVSTHS----EPSSRQLQTSPQQPQPSPQQP 154
E+Q + + PP +QP +PPP +S PS L SP P PSP P
Sbjct: 501 ELQAPKYRSPPPLQPKSQKPPLPPPLPPAPTPQNSPPPQSPSPLPLSPSPPPPTPSPPSP 322
>TC213991 similar to UP|Q6H976 (Q6H976) STYLOSA protein, partial (12%)
Length = 440
Score = 33.5 bits (75), Expect = 0.19
Identities = 20/63 (31%), Positives = 29/63 (45%)
Frame = +3
Query: 134 EPSSRQLQTSPQQPQPSPQQPRQGARVALSSPHAKGGSASSKTAASSHTSGERLSALLVE 193
+ +Q Q+ QQ QP QQ R A + S + G+ + A ++ ERL L
Sbjct: 57 QQQQQQPQSQQQQSQPQQQQSRDRAHLLNGSANGLVGNPGTANALATKMYEERLKLPLQR 236
Query: 194 DPL 196
DPL
Sbjct: 237 DPL 245
>CK605939
Length = 458
Score = 33.5 bits (75), Expect = 0.19
Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 13/99 (13%)
Frame = -2
Query: 84 QNMPSPAREENVSHDEVQGSEGQEPPIIQP-DQVIGLMP-----PPKADVLVSTHSEPSS 137
Q P+ +E+ +H + + +E + P P D+++G PPK D P
Sbjct: 457 QGRPALVQEQGRAHQDPR*AEDRARPAAHPEDRLLGHQAEQDPRPPKVD-----RPRPHH 293
Query: 138 RQLQTSPQQPQ-------PSPQQPRQGARVALSSPHAKG 169
Q Q +P P P+P+ PRQ SSP ++G
Sbjct: 292 HQRQGAPPPPPLXQEQEVPAPRPPRQADPRHPSSPFSRG 176
>TC232008 weakly similar to UP|Q9FIH3 (Q9FIH3) Serine/threonine protein
kinase-like protein (At5g42440), partial (29%)
Length = 618
Score = 33.5 bits (75), Expect = 0.19
Identities = 45/173 (26%), Positives = 61/173 (35%), Gaps = 3/173 (1%)
Frame = +2
Query: 14 SKPPPIALSSSSSSLESSSSSLNSTESDPVWDKLTFYFNSKPIAWQHPGCEPYYTKECRD 73
S PPP A S SS SSS ++T + P KP P EP
Sbjct: 134 SSPPPPASSWLCSSFLPPSSSASTTATPP-----------KPQPAAPPRSEPA------- 259
Query: 74 NLSNFPPQDMQNMPSPAREENVSHDEVQGSEGQEPPIIQPDQVIGLMPPPKADVLVSTHS 133
PP + P+P+ + S G+ P PP L S+ +
Sbjct: 260 -----PPPTVTPPPAPSWKTGPPTPT*SRSPGRSSPA-----------PPTTSPLTSSSA 391
Query: 134 ---EPSSRQLQTSPQQPQPSPQQPRQGARVALSSPHAKGGSASSKTAASSHTS 183
SS + + P PS P +R + SSP A+S T SS +S
Sbjct: 392 MAASASSTRPVSPTVPPSPSKNSPPTPSRASASSPPRWRP*AASATQTSSKSS 550
>BQ611828 weakly similar to PIR|JE0230|JE02 NADPH-cytochrome P450
oxidoreductase (EC 1.-.-.-) - common tobacco, partial
(7%)
Length = 308
Score = 33.1 bits (74), Expect = 0.24
Identities = 27/75 (36%), Positives = 33/75 (44%), Gaps = 8/75 (10%)
Frame = +3
Query: 119 LMPPPKADVLVSTHSE------PSSRQLQTSPQQPQP--SPQQPRQGARVALSSPHAKGG 170
L PPP S PSSR T P P P +PQ P +R A SS +
Sbjct: 24 LQPPPACKTPAP*RSPLWISCPPSSRASSTPPTSPPPPPTPQLP-SSSRTASSSCSSPPP 200
Query: 171 SASSKTAASSHTSGE 185
S SS A+SS + G+
Sbjct: 201 SPSSSAASSSSSGGD 245
>TC224221 weakly similar to UP|Q8V7F2 (Q8V7F2) ORF1 (Fragment), partial (38%)
Length = 560
Score = 33.1 bits (74), Expect = 0.24
Identities = 24/69 (34%), Positives = 35/69 (49%), Gaps = 6/69 (8%)
Frame = +1
Query: 121 PPPKADVLVSTHSEPSSRQLQTSPQQPQPSPQ------QPRQGARVALSSPHAKGGSASS 174
PPP A +L S+ S R ++S P PSP +P QGAR S+P S+++
Sbjct: 13 PPPSAPLLPSSLCARSPRAPRSSALTPSPSPSWSP*WPRPPQGAR---STPSESSPSSTA 183
Query: 175 KTAASSHTS 183
AA+ T+
Sbjct: 184 A*AAARSTT 210
>CO985879
Length = 695
Score = 32.7 bits (73), Expect = 0.32
Identities = 28/86 (32%), Positives = 36/86 (41%), Gaps = 6/86 (6%)
Frame = -1
Query: 108 PPIIQPDQVIGLMPPPKADVLVSTHSEPSSRQLQTSPQQPQPSPQ------QPRQGARVA 161
PP +P PPP A L S+ S + ++S P PSP +P QGAR
Sbjct: 470 PPSWRPPPT-STAPPPSAPSLPSSSCARSPKAPRSSAPTPSPSPSWSP*WPRPPQGARST 294
Query: 162 LSSPHAKGGSASSKTAASSHTSGERL 187
S P S SS + T+ RL
Sbjct: 293 PSEP-----SPSSTAPPAPRTTTPRL 231
>TC233121 similar to GB|AAP13385.1|30023704|BT006277 At3g56360 {Arabidopsis
thaliana;} , partial (36%)
Length = 990
Score = 32.7 bits (73), Expect = 0.32
Identities = 34/135 (25%), Positives = 52/135 (38%), Gaps = 17/135 (12%)
Frame = -2
Query: 74 NLSNFPPQDMQNMPSPARE-ENVSHDEVQGSEGQEPPIIQPDQVIGLMPPP---KADVLV 129
N SN P + + P + ++ D + + PP + PPP +
Sbjct: 725 NGSNKSPSHYRVLTRPDKSLKDNKPDRTRRPSPEPPPPTPSSSSLRHRPPPCPRPTPPRI 546
Query: 130 STHSEPSSRQLQTSPQQP--------QPSP-----QQPRQGARVALSSPHAKGGSASSKT 176
S EP+SR++ T+P P PSP ++P A +S + + SS
Sbjct: 545 SIPPEPASRRIPTAPSPPASPPPPPSSPSPSSPIWEKPAPAAAPPSNSSRSPPPTLSSTC 366
Query: 177 AASSHTSGERLSALL 191
AS G R S LL
Sbjct: 365 PASPVPRGRRFSLLL 321
>TC225559 similar to UP|Q9XIV1 (Q9XIV1) Cucumis sativus mRNA expressed in
cucumber hypocotyls, complete cds (Arabinogalactan
protein), partial (47%)
Length = 870
Score = 32.3 bits (72), Expect = 0.42
Identities = 20/71 (28%), Positives = 31/71 (43%)
Frame = +3
Query: 108 PPIIQPDQVIGLMPPPKADVLVSTHSEPSSRQLQTSPQQPQPSPQQPRQGARVALSSPHA 167
PP P + + PP A V VS+ P T+P P P+P+ ++G + +P
Sbjct: 363 PPATPPPAPVPVSSPP-APVPVSSPPAPVPVAAPTTPVAPSPAPKHKKKGKKHGAPAPSP 539
Query: 168 KGGSASSKTAA 178
G + T A
Sbjct: 540 LLGPPAPPTGA 572
>TC209655 similar to UP|Q8L844 (Q8L844) Crp1 protein-like, partial (32%)
Length = 832
Score = 32.3 bits (72), Expect = 0.42
Identities = 43/176 (24%), Positives = 57/176 (31%), Gaps = 13/176 (7%)
Frame = +1
Query: 17 PPIALSSSSSSLESSSSSLNSTESDPVWDKLTFYFNSKPIAWQHPGCEPYYTKECRDNLS 76
PP SS + SS S+ +T S P S P + H P T+ L
Sbjct: 4 PPNQSSSKKAPTTSSPSTTAATTSPP----------SSPSSPTH---RPLPTRTPTQPLP 144
Query: 77 NFPPQDMQNMPSPAREENVSHDEVQGSEGQEPPIIQPDQVIGLMPPPKADVLVSTH---- 132
Q N PSP + H + S PP PPP S H
Sbjct: 145 PHSAQPSSNSPSPTAPSRL-HSGTRSSSPSAPP-----------PPPSPSRTPSFHGSRN 288
Query: 133 ---------SEPSSRQLQTSPQQPQPSPQQPRQGARVALSSPHAKGGSASSKTAAS 179
S PSS +P+ P R +L SP + + + +TA S
Sbjct: 289 TISASPTSSSTPSSSTPSAAPKSSTKPSYSP--SVRSSLPSPTTRSSARAPETATS 450
>TC233834 similar to UP|Q9FGZ0 (Q9FGZ0) Arabidopsis thaliana genomic DNA,
chromosome 5, TAC clone:K6M13, partial (18%)
Length = 432
Score = 32.3 bits (72), Expect = 0.42
Identities = 29/97 (29%), Positives = 35/97 (35%)
Frame = +3
Query: 78 FPPQDMQNMPSPAREENVSHDEVQGSEGQEPPIIQPDQVIGLMPPPKADVLVSTHSEPSS 137
+PP+ P PA D + G P G PPP S PSS
Sbjct: 123 YPPRGCTE-PPPAPAPPPPFDPINGRHSPAPFSRASPSSSGPPPPP---------SSPSS 272
Query: 138 RQLQTSPQQPQPSPQQPRQGARVALSSPHAKGGSASS 174
T+ P P+P QPR A A SS S+ S
Sbjct: 273 TS--TAKTLPPPAPSQPRSTAAAASSSSAPAPASSES 377
Score = 31.2 bits (69), Expect = 0.93
Identities = 18/63 (28%), Positives = 24/63 (37%)
Frame = +3
Query: 121 PPPKADVLVSTHSEPSSRQLQTSPQQPQPSPQQPRQGARVALSSPHAKGGSASSKTAASS 180
PPP D + HS + S P P P P + P A S+ AASS
Sbjct: 165 PPPPFDPINGRHSPAPFSRASPSSSGPPPPPSSPSSTSTAKTLPPPAPSQPRSTAAAASS 344
Query: 181 HTS 183
++
Sbjct: 345 SSA 353
>TC216776 similar to UP|Q75WV0 (Q75WV0) ALG2-interacting protein X, partial
(11%)
Length = 855
Score = 32.3 bits (72), Expect = 0.42
Identities = 22/81 (27%), Positives = 29/81 (35%)
Frame = +3
Query: 76 SNFPPQDMQNMPSPAREENVSHDEVQGSEGQEPPIIQPDQVIGLMPPPKADVLVSTHSEP 135
SN+P QN SP + + + E P + P G PPP H P
Sbjct: 135 SNYPSVGSQNQRSPTQTDPARPQAPYYQQPVEQPPVPP---YGHHPPPPYGGPAQHHQPP 305
Query: 136 SSRQLQTSPQQPQPSPQQPRQ 156
+ S P P PQ +Q
Sbjct: 306 PPYHIPPSSTAPYPPPQVHQQ 368
>BM892538 similar to GP|9759296|dbj| gamma-tubulin interacting protein-like
{Arabidopsis thaliana}, partial (8%)
Length = 421
Score = 32.0 bits (71), Expect = 0.54
Identities = 24/82 (29%), Positives = 34/82 (41%)
Frame = +2
Query: 108 PPIIQPDQVIGLMPPPKADVLVSTHSEPSSRQLQTSPQQPQPSPQQPRQGARVALSSPHA 167
PP P PPK ST + PSS ++SP+ P PQ P + ++S
Sbjct: 8 PPKPSPSPTSSPNSPPKPKA--STTNSPSSTSSKSSPKIATPPPQPPPLSSPTSVSPNLP 181
Query: 168 KGGSASSKTAASSHTSGERLSA 189
+ + TA SS R +A
Sbjct: 182 PTKNPGTTTAPSSSPRTPRTAA 247
>TC228734 weakly similar to UP|Q99738 (Q99738) Pinin, partial (4%)
Length = 1156
Score = 32.0 bits (71), Expect = 0.54
Identities = 40/146 (27%), Positives = 49/146 (33%), Gaps = 3/146 (2%)
Frame = +1
Query: 17 PPIALSSSSSSLESSSSSLNSTESDPVWDKLTFYFNSKPIAWQHPGCEPYYTKECRDNLS 76
P + SSSSSS SSSS +S +P T P P + L
Sbjct: 274 PRSSASSSSSSW*SSSSGSSSAPPNPASSSKT------------PPSTPSTSPPPATPLP 417
Query: 77 NFPPQDMQNMPSPAREENVSHDEVQGSEGQEP---PIIQPDQVIGLMPPPKADVLVSTHS 133
P Q PSP R + SE P P PPP +T +
Sbjct: 418 PLP-QPPTPSPSPCRSPSPPSTPTTASEFTTPNSTPTPPTAASRSPSPPPSPPPTRATAT 594
Query: 134 EPSSRQLQTSPQQPQPSPQQPRQGAR 159
PS T P P P P + R +R
Sbjct: 595 PPSGPPTSTPPPSPSP-PSRSRSSSR 669
>CA852019 homologue to GP|12697486|em phosphate transporter {Sesbania
rostrata}, partial (21%)
Length = 793
Score = 32.0 bits (71), Expect = 0.54
Identities = 18/42 (42%), Positives = 21/42 (49%)
Frame = -3
Query: 150 SPQQPRQGARVALSSPHAKGGSASSKTAASSHTSGERLSALL 191
SP+ R G + SPH G T SSH SG+RL LL
Sbjct: 140 SPENTRNGFKNP-ESPHVSAGICPIPTLCSSHFSGQRLHKLL 18
>BI969707
Length = 711
Score = 31.2 bits (69), Expect = 0.93
Identities = 30/126 (23%), Positives = 39/126 (30%), Gaps = 2/126 (1%)
Frame = +3
Query: 63 CEPYYTKECRDNLSNFPPQDMQNMPSPAREENVSHDEVQGSEGQEPPIIQPDQVIGLMPP 122
C T+ + S PP P P + S PP P + PP
Sbjct: 315 CSASATQSWASHCSASPP------PVPCDRGTGNTSSTASSPRAPPPRSTPSEPCSEPPP 476
Query: 123 --PKADVLVSTHSEPSSRQLQTSPQQPQPSPQQPRQGARVALSSPHAKGGSASSKTAASS 180
P + + + PS P P P+ P A SSP GS S +A
Sbjct: 477 HTPPSPPRIYRSAPPSXMTPPPQSSTPXPPPRGPNSPPSTASSSPSPLRGSPPSTCSAXX 656
Query: 181 HTSGER 186
S R
Sbjct: 657 PKSPPR 674
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.310 0.126 0.342
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,801,508
Number of Sequences: 63676
Number of extensions: 298541
Number of successful extensions: 4092
Number of sequences better than 10.0: 169
Number of HSP's better than 10.0 without gapping: 2897
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3598
length of query: 426
length of database: 12,639,632
effective HSP length: 100
effective length of query: 326
effective length of database: 6,272,032
effective search space: 2044682432
effective search space used: 2044682432
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 60 (27.7 bits)
Lotus: description of TM0224.12