TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0223.17
         (88 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC235032 weakly similar to UP|Q7XDX0 (Q7XDX0) Contains similarit...    38  8e-04
TC219628                                                               28  0.79
TC212187 weakly similar to UP|Q6USA0 (Q6USA0) Transposase (Fragm...    27  1.8
BI700883                                                               25  6.7
TC214282                                                               25  6.7
TC214065                                                               25  6.7
TC231377 similar to UP|Q8LA13 (Q8LA13) ATP-dependent RNA helicas...    25  8.7
TC218262                                                               25  8.7
TC203736 similar to UP|O04149 (O04149) Atranbp1a protein, partia...    25  8.7
TC221595 weakly similar to UP|Q8XLQ5 (Q8XLQ5) Two-component sens...    25  8.7

>TC235032 weakly similar to UP|Q7XDX0 (Q7XDX0) Contains similarity to
           ribosomal protein, partial (24%)
          Length = 689

 Score = 38.1 bits (87), Expect = 8e-04
 Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
 Frame = +3

Query: 8   LYACIILHNMIVEDEREGYNGNF--VYDQVDNDIITAEVSNGPIP 50
           +Y CIILHNMIV+DE   YN N    Y    N+++  ++  G  P
Sbjct: 528 MYVCIILHNMIVKDEPHTYNENIDRQYKYPTNNVLIIDIHIGLHP 662


>TC219628 
          Length = 670

 Score = 28.1 bits (61), Expect = 0.79
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = +1

Query: 22  EREGYNGNFVYDQVDNDIITAEVSNGPIPSF 52
           E EG  G  +YD  D  + TA  SNG I  F
Sbjct: 535 ELEGSFGFVIYDNKDGTVFTASGSNGQIELF 627


>TC212187 weakly similar to UP|Q6USA0 (Q6USA0) Transposase (Fragment),
           partial (45%)
          Length = 973

 Score = 26.9 bits (58), Expect = 1.8
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = +1

Query: 6   QILYACIILHNMIVEDEREGYNGNFVYDQVDNDIITAEVSNGPI-PSFATFLE 57
           QI+ AC+ +HN I  +++   +G F     DN+ I  +     + PS  T+ E
Sbjct: 748 QIIVACMTIHNFIQRNDKS--DGEFDSLDEDNEYIDTDKDESEVGPSTTTWEE 900


>BI700883 
          Length = 422

 Score = 25.0 bits (53), Expect = 6.7
 Identities = 12/28 (42%), Positives = 14/28 (49%)
 Frame = +1

Query: 22  EREGYNGNFVYDQVDNDIITAEVSNGPI 49
           E EG  G  +YD  D  +  A  SNG I
Sbjct: 145 ELEGSFGFVIYDNKDGSVFVASGSNGHI 228


>TC214282 
          Length = 876

 Score = 25.0 bits (53), Expect = 6.7
 Identities = 12/28 (42%), Positives = 14/28 (49%)
 Frame = +1

Query: 22  EREGYNGNFVYDQVDNDIITAEVSNGPI 49
           E EG  G  +YD  D  +  A  SNG I
Sbjct: 181 ELEGSFGFVIYDNKDGTVFVASGSNGQI 264


>TC214065 
          Length = 801

 Score = 25.0 bits (53), Expect = 6.7
 Identities = 12/28 (42%), Positives = 14/28 (49%)
 Frame = +3

Query: 22  EREGYNGNFVYDQVDNDIITAEVSNGPI 49
           E EG  G  +YD  D  +  A  SNG I
Sbjct: 504 ELEGSFGFVIYDNKDGTVFVASGSNGQI 587


>TC231377 similar to UP|Q8LA13 (Q8LA13) ATP-dependent RNA helicase-like
           protein, partial (15%)
          Length = 770

 Score = 24.6 bits (52), Expect = 8.7
 Identities = 13/44 (29%), Positives = 22/44 (49%)
 Frame = -1

Query: 29  NFVYDQVDNDIITAEVSNGPIPSFATFLERRGHMSQREIHRQLQ 72
           NF+Y+Q +N+++    SN   P     L+   H +   IH Q +
Sbjct: 419 NFIYNQQENELVM*H*SN---PKH*AHLDHTLHHNCHNIHHQFR 297


>TC218262 
          Length = 987

 Score = 24.6 bits (52), Expect = 8.7
 Identities = 13/34 (38%), Positives = 15/34 (43%)
 Frame = +1

Query: 37  NDIITAEVSNGPIPSFATFLERRGHMSQREIHRQ 70
           N  +TA  SN P P F     R  H S    HR+
Sbjct: 142 NSALTAPNSNSPHPQFGELGFRPIHSSMHHHHRR 243


>TC203736 similar to UP|O04149 (O04149) Atranbp1a protein, partial (48%)
          Length = 509

 Score = 24.6 bits (52), Expect = 8.7
 Identities = 10/21 (47%), Positives = 11/21 (51%)
 Frame = +1

Query: 58  RRGHMSQREIHRQLQADLVEH 78
           RRGH S R  HRQ +     H
Sbjct: 172 RRGHRSTRRSHRQARGGCCHH 234


>TC221595 weakly similar to UP|Q8XLQ5 (Q8XLQ5) Two-component sensor histidine
           kinase, partial (4%)
          Length = 869

 Score = 24.6 bits (52), Expect = 8.7
 Identities = 10/26 (38%), Positives = 18/26 (68%)
 Frame = -3

Query: 32  YDQVDNDIITAEVSNGPIPSFATFLE 57
           +D + + I +  +S+ P+PSFA+F E
Sbjct: 696 FDSLVSCIFSYSLSSVPVPSFASFRE 619


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.327    0.141    0.432 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,724,398
Number of Sequences: 63676
Number of extensions: 38478
Number of successful extensions: 238
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 238
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 238
length of query: 88
length of database: 12,639,632
effective HSP length: 64
effective length of query: 24
effective length of database: 8,564,368
effective search space: 205544832
effective search space used: 205544832
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 52 (24.6 bits)