BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0219.2
(365 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC222193 UP|Q39873 (Q39873) Lea protein precursor, complete 35 0.053
TC216024 similar to GB|AAM78036.1|21928015|AY125526 At2g01100/F2... 35 0.053
BU765158 35 0.069
TC228949 similar to UP|Q945N1 (Q945N1) AT5g50310/MXI22_1, partia... 33 0.20
BE822052 similar to GP|4557063|gb|A expressed protein {Arabidops... 33 0.26
TC210126 similar to UP|NUCL_HUMAN (P19338) Nucleolin (Protein C2... 32 0.34
TC227552 homologue to UP|O65879 (O65879) Translation initiation ... 32 0.45
TC206039 32 0.45
TC230134 weakly similar to UP|NUCL_HUMAN (P19338) Nucleolin (Pro... 32 0.45
TC207814 similar to UP|Q75XU7 (Q75XU7) RIO kinase, partial (43%) 32 0.45
TC220438 UP|Q6L7P1 (Q6L7P1) P12, partial (12%) 32 0.59
TC220236 weakly similar to UP|Q9LSB9 (Q9LSB9) Emb|CAA16573.1 (At... 32 0.59
TC216648 weakly similar to UP|Q9FFQ8 (Q9FFQ8) Emb|CAB62360.1, pa... 32 0.59
TC212457 UP|Q39871 (Q39871) Maturation polypeptide, complete 32 0.59
TC232681 weakly similar to GB|AAP21377.1|30102918|BT006569 At1g4... 31 0.77
TC230133 weakly similar to UP|Q6VBJ3 (Q6VBJ3) Epa4p, partial (6%) 31 1.0
TC228249 similar to UP|Q9M9V0 (Q9M9V0) F6A14.10 protein, partial... 31 1.0
TC227389 similar to UP|Q8LJS2 (Q8LJS2) Nucleolar histone deacety... 31 1.0
TC232838 similar to GB|AAP21377.1|30102918|BT006569 At1g47970 {A... 31 1.0
TC203787 similar to UP|Q6VBJ3 (Q6VBJ3) Epa4p, partial (6%) 31 1.0
>TC222193 UP|Q39873 (Q39873) Lea protein precursor, complete
Length = 1748
Score = 35.0 bits (79), Expect = 0.053
Identities = 51/258 (19%), Positives = 101/258 (38%), Gaps = 11/258 (4%)
Frame = +3
Query: 12 KMKEYLAQSAAAAKKRAAETEQKKKNEGTSGSDNVRDPKRQKTSSAAGVKPLHQSTLDPK 71
K K+Y + + AAKK QK K+ + G+ +D S AA Q T D
Sbjct: 729 KTKDYASDATDAAKKTKDYAAQKTKDYASGGAQKTKD----YASGAA------QKTKDYA 878
Query: 72 GRPTEKKKGH--DNVPPHQPDSGALINRPSTPFIQAGPSSAIGGEALPPLLN-LSDPRFN 128
++ K H D + +G + A S G+A+ + + +D
Sbjct: 879 SDAAQRTKDHASDGAQKSKEYAGDVAQNAKD---YAQKSKDYAGDAVQNIKDYANDAAHK 1049
Query: 129 GLDF----MNRTFDNRIHKDVSGQGPPNIASVAIHHALSAASIVAGMAQCVKELIATKNR 184
D+ +++ + + + Q + A + A+ + AQ KE +
Sbjct: 1050SKDYAGDASHKSKEASDYASETAQKTKDYVGDAAQKSKEASEYASDAAQRTKEYAGDATK 1229
Query: 185 YEKKAADYKTAYEQAKADAETANKNLKAAEERCAKLTDDLAASDLLLQKTKSLKETINDK 244
K+A+D+ A + A+ + A+ + +E+ + + A +K + +K+ +K
Sbjct: 1230RSKEASDH--ANDMARKTKDYASDTAQRTKEKLQDIASE--AGQYSTEKAREMKDAAAEK 1397
Query: 245 HT----AVQAKCQKLEKK 258
+ A + K Q+L+ K
Sbjct: 1398ASDIAKAAKQKSQELKDK 1451
Score = 34.7 bits (78), Expect = 0.069
Identities = 54/238 (22%), Positives = 89/238 (36%), Gaps = 8/238 (3%)
Frame = +3
Query: 12 KMKEYLAQSAAAAKKRAAETEQKKK---NEGTSGSDNVRDPKRQKTSSAAGVKPLHQSTL 68
K K+Y + + AAKK QK K ++ T + +D QKT A Q T
Sbjct: 663 KTKDYASDATDAAKKTKDYAAQKTKDYASDATDAAKKTKDYAAQKTKDYASGGA--QKTK 836
Query: 69 DPKGRPTEKKKGHDNVPPHQPDSGALINRPSTPFIQAGPSSAIGGEALPPLLNLSDPRFN 128
D +K K + + + A A S G+ N D
Sbjct: 837 DYASGAAQKTKDYASDAAQRTKDHASDG--------AQKSKEYAGDVAQ---NAKDYAQK 983
Query: 129 GLDFMNRTFDN-RIHKDVSGQGPPNIASVAIHHALSAASIVAGMAQCVKELIATKNRYEK 187
D+ N + + + + + A A H + A+ + AQ K+ + + K
Sbjct: 984 SKDYAGDAVQNIKDYANDAAHKSKDYAGDASHKSKEASDYASETAQKTKDYVGDAAQKSK 1163
Query: 188 KAADYKT-AYEQAKADAETANKNLKAAEERC---AKLTDDLAASDLLLQKTKSLKETI 241
+A++Y + A ++ K A A K K A + A+ T D A+ Q+TK + I
Sbjct: 1164EASEYASDAAQRTKEYAGDATKRSKEASDHANDMARKTKDYASD--TAQRTKEKLQDI 1331
>TC216024 similar to GB|AAM78036.1|21928015|AY125526 At2g01100/F23H14.7
{Arabidopsis thaliana;} , partial (14%)
Length = 1433
Score = 35.0 bits (79), Expect = 0.053
Identities = 20/70 (28%), Positives = 34/70 (48%)
Frame = +2
Query: 10 PIKMKEYLAQSAAAAKKRAAETEQKKKNEGTSGSDNVRDPKRQKTSSAAGVKPLHQSTLD 69
P+K ++ L +A +++ T+ KK++ S SDN D + +KTS + K S D
Sbjct: 263 PLKWEQKLEAAAETKERKLKATKHKKRSGSDSDSDNDSDDESRKTSKRSHRKHRKHSHYD 442
Query: 70 PKGRPTEKKK 79
K+K
Sbjct: 443 SGDHEKRKEK 472
>BU765158
Length = 420
Score = 34.7 bits (78), Expect = 0.069
Identities = 24/91 (26%), Positives = 39/91 (42%)
Frame = +2
Query: 273 LFAQGFLAAKEQISVVEPGFDLSRIGWLKEIKDGQVVGDDDISLDLLPQFDDESEPEEDG 332
L+ Q K +S+ + ++ KD V+ DD +L L + +S +ED
Sbjct: 5 LYYQTITGLKHALSLTQTSQQKTQQQKSSPTKDSPVISDDKSNL-LEDDAEGQSGKDEDD 181
Query: 333 EDGNEQHKNEDHEKEDPQAGTSQGNNANNEN 363
E G+E+ + E EDP + A EN
Sbjct: 182 ESGSEEDSCSESEVEDPADIKAARKEARKEN 274
>TC228949 similar to UP|Q945N1 (Q945N1) AT5g50310/MXI22_1, partial (27%)
Length = 1134
Score = 33.1 bits (74), Expect = 0.20
Identities = 21/80 (26%), Positives = 36/80 (44%), Gaps = 17/80 (21%)
Frame = +3
Query: 298 GWLKEIKDGQVVGDDDISLDL-----------------LPQFDDESEPEEDGEDGNEQHK 340
G + EIKD ++ DD SL+L + DD+ E E+D ED ++
Sbjct: 42 GGMMEIKDQEITLDDLYSLNLSKLDEWKCIIPASESEWVEASDDDEENEDDDEDESDGDS 221
Query: 341 NEDHEKEDPQAGTSQGNNAN 360
D +++D + + NA+
Sbjct: 222 LTDEDEDDEEEEEEEAQNAS 281
>BE822052 similar to GP|4557063|gb|A expressed protein {Arabidopsis
thaliana}, partial (28%)
Length = 668
Score = 32.7 bits (73), Expect = 0.26
Identities = 14/53 (26%), Positives = 26/53 (48%)
Frame = -1
Query: 310 GDDDISLDLLPQFDDESEPEEDGEDGNEQHKNEDHEKEDPQAGTSQGNNANNE 362
GD+D S + + D E +PE +G G+ + D + +D G G + + +
Sbjct: 458 GDEDFSGEGEEEADPEDDPEANGAGGSNDDDDSDEDDDDDNDGDDDGEDEDEK 300
Score = 30.4 bits (67), Expect = 1.3
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 12/52 (23%)
Frame = -1
Query: 324 DESEPEEDGEDGNEQHKNEDHE------------KEDPQAGTSQGNNANNEN 363
DE E EED D N+Q+ E E ++DP+A + G+N ++++
Sbjct: 515 DEDEDEEDDHDTNDQNDEEGDEDFSGEGEEEADPEDDPEANGAGGSNDDDDS 360
Score = 30.4 bits (67), Expect = 1.3
Identities = 17/46 (36%), Positives = 29/46 (62%), Gaps = 1/46 (2%)
Frame = -1
Query: 311 DDDISLDLLPQFDDESEPEEDGEDGNEQH-KNEDHEKEDPQAGTSQ 355
DDD D DD+++ ++DGED +E+ ++E+ E+E PQ T +
Sbjct: 371 DDDSDED----DDDDNDGDDDGEDEDEKEGEDEEDEEEVPQPPTKK 246
>TC210126 similar to UP|NUCL_HUMAN (P19338) Nucleolin (Protein C23), partial
(7%)
Length = 735
Score = 32.3 bits (72), Expect = 0.34
Identities = 13/33 (39%), Positives = 24/33 (72%)
Frame = +3
Query: 323 DDESEPEEDGEDGNEQHKNEDHEKEDPQAGTSQ 355
DD+++ EED +DG ++ + ED E+++ + TSQ
Sbjct: 492 DDDNDNEEDDDDGEDEEEEEDEEEDEEE--TSQ 584
Score = 29.6 bits (65), Expect = 2.2
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = +3
Query: 323 DDESEPEEDGEDGNEQHKNEDHEKEDPQAGTSQGN 357
DD+ + +ED EDG++Q + + E+ + G +G+
Sbjct: 342 DDDKDGDEDDEDGHDQDDDGEDEEFSGEEGDEEGD 446
>TC227552 homologue to UP|O65879 (O65879) Translation initiation factor,
partial (27%)
Length = 429
Score = 32.0 bits (71), Expect = 0.45
Identities = 19/58 (32%), Positives = 28/58 (47%)
Frame = -1
Query: 195 AYEQAKADAETANKNLKAAEERCAKLTDDLAASDLLLQKTKSLKETINDKHTAVQAKC 252
A+ + ++ AA R A TD +A +DLL +K K LKE N V+ +C
Sbjct: 174 AFTPSVVSKSISSAGFAAARRRFAGTTDVVAIADLLEEKKKGLKERGNGFWRGVRLQC 1
>TC206039
Length = 834
Score = 32.0 bits (71), Expect = 0.45
Identities = 21/81 (25%), Positives = 36/81 (43%), Gaps = 3/81 (3%)
Frame = -2
Query: 12 KMKEYLAQSAAAAKKRAAETEQKKKNEGTSGSDNVRDPKRQKTSSAAGVKPLHQSTLDPK 71
K K+ + KK+ + ++KKK + + K++K G +P + +
Sbjct: 269 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKIKKKKKKKKKKKKXXXGGGGEPKXXKKKEKR 90
Query: 72 GRP---TEKKKGHDNVPPHQP 89
GRP +KK+G N P QP
Sbjct: 89 GRPRGGXKKKRGRKN-PRGQP 30
Score = 27.7 bits (60), Expect = 8.5
Identities = 17/77 (22%), Positives = 31/77 (40%)
Frame = -2
Query: 3 KSKVDANPIKMKEYLAQSAAAAKKRAAETEQKKKNEGTSGSDNVRDPKRQKTSSAAGVKP 62
K K K K+ + KK+ + ++KKK G + K++K G
Sbjct: 245 KKKKKKKKKKKKKKKKKKKKKIKKKKKKKKKKKKXXXGGGGEPKXXKKKEKRGRPRGGXK 66
Query: 63 LHQSTLDPKGRPTEKKK 79
+ +P+G+P + K
Sbjct: 65 KKRGRKNPRGQPKKTPK 15
>TC230134 weakly similar to UP|NUCL_HUMAN (P19338) Nucleolin (Protein C23),
partial (8%)
Length = 581
Score = 32.0 bits (71), Expect = 0.45
Identities = 16/49 (32%), Positives = 26/49 (52%)
Frame = +2
Query: 302 EIKDGQVVGDDDISLDLLPQFDDESEPEEDGEDGNEQHKNEDHEKEDPQ 350
E G DDD D DD+ E+DG++ ++ ++ED ++E PQ
Sbjct: 401 EANGGGESDDDDEDDD----DDDDDNDEDDGDEDDDDEEDEDEDEETPQ 535
Score = 28.5 bits (62), Expect = 5.0
Identities = 15/49 (30%), Positives = 25/49 (50%), Gaps = 4/49 (8%)
Frame = +2
Query: 311 DDDISLDLLPQFDDESEPEEDGEDGNEQ----HKNEDHEKEDPQAGTSQ 355
DDD + + DD+ E ++D +D N++ ++D E ED T Q
Sbjct: 389 DDDPEANGGGESDDDDEDDDDDDDDNDEDDGDEDDDDEEDEDEDEETPQ 535
Score = 27.7 bits (60), Expect = 8.5
Identities = 20/67 (29%), Positives = 35/67 (51%), Gaps = 4/67 (5%)
Frame = +2
Query: 301 KEIKDGQVVGDDDISLDLLP--QFDDESEPEED--GEDGNEQHKNEDHEKEDPQAGTSQG 356
+E KD DDD D+ DD+ E +ED G+DG E+ ++ +DP+A
Sbjct: 254 EENKDASDTEDDDDDDDVNDGEDGDDDDEDDEDFSGDDGGEEADSD----DDPEANGGGE 421
Query: 357 NNANNEN 363
++ ++E+
Sbjct: 422 SDDDDED 442
>TC207814 similar to UP|Q75XU7 (Q75XU7) RIO kinase, partial (43%)
Length = 1259
Score = 32.0 bits (71), Expect = 0.45
Identities = 23/91 (25%), Positives = 38/91 (41%)
Frame = +2
Query: 273 LFAQGFLAAKEQISVVEPGFDLSRIGWLKEIKDGQVVGDDDISLDLLPQFDDESEPEEDG 332
L+ Q K +S+ +P ++ KD V DD L L + +S+ +ED
Sbjct: 542 LYYQTITGLKHALSLTQPSQQKTQQK-SSPTKDSPAVSDDKSKL-LEDDAEGQSDEDEDD 715
Query: 333 EDGNEQHKNEDHEKEDPQAGTSQGNNANNEN 363
E +E+ + E +DP + A EN
Sbjct: 716 ESNSEEDSPSESEVDDPADKKAARKEARKEN 808
>TC220438 UP|Q6L7P1 (Q6L7P1) P12, partial (12%)
Length = 973
Score = 31.6 bits (70), Expect = 0.59
Identities = 25/93 (26%), Positives = 40/93 (42%)
Frame = +3
Query: 9 NPIKMKEYLAQSAAAAKKRAAETEQKKKNEGTSGSDNVRDPKRQKTSSAAGVKPLHQSTL 68
N K L ++ A ++R + T +K NE D + K++K S + T
Sbjct: 279 NSKKTTSQLQENTVAEEERPSSTPKKAVNE----IDEIFAGKKRKKSEMVNTGKPDEVT- 443
Query: 69 DPKGRPTEKKKGHDNVPPHQPDSGALINRPSTP 101
K T+KKK + + D G ++RPS P
Sbjct: 444 -KKTDKTKKKKKNMKRKTYGSDDGKFVDRPSRP 539
>TC220236 weakly similar to UP|Q9LSB9 (Q9LSB9) Emb|CAA16573.1 (At3g15920),
partial (15%)
Length = 1001
Score = 31.6 bits (70), Expect = 0.59
Identities = 27/112 (24%), Positives = 47/112 (41%), Gaps = 7/112 (6%)
Frame = +1
Query: 162 LSAASIVAGMAQCVKELIATKNRYEKKAADYKTAYEQAKADAETANKNLKAAEERCAKLT 221
L+ SIV ++ L ATK + E + Y ++KAD + K +K+ KL
Sbjct: 76 LTKESIVQQNDVLLENLDATKEQLEILSKQYGELEAKSKADVKVLVKEVKSLRNSQTKLK 255
Query: 222 DDLAAS-------DLLLQKTKSLKETINDKHTAVQAKCQKLEKKYERLNASI 266
+L+ S + LL + +E + KC+ L + + N S+
Sbjct: 256 KELSESIKEHSETEKLLLHEREKREQAEVARRILLEKCRVLFNQLQECNVSL 411
>TC216648 weakly similar to UP|Q9FFQ8 (Q9FFQ8) Emb|CAB62360.1, partial (41%)
Length = 2064
Score = 31.6 bits (70), Expect = 0.59
Identities = 16/54 (29%), Positives = 30/54 (54%), Gaps = 1/54 (1%)
Frame = +1
Query: 304 KDGQVVGDDDISLDLLPQFDDESEPEEDGEDGNEQ-HKNEDHEKEDPQAGTSQG 356
KDG G+ ++ + + + E +EDGE+ +EQ K E+ E E+ + ++G
Sbjct: 250 KDGGAAGNQEVEEEADAAEEKKEEIDEDGEEKDEQEEKEEEDEAEEKEKEKAKG 411
>TC212457 UP|Q39871 (Q39871) Maturation polypeptide, complete
Length = 1741
Score = 31.6 bits (70), Expect = 0.59
Identities = 15/46 (32%), Positives = 26/46 (55%)
Frame = +1
Query: 12 KMKEYLAQSAAAAKKRAAETEQKKKNEGTSGSDNVRDPKRQKTSSA 57
++K+ A++A AAK + AET + KN+ D +D + T +A
Sbjct: 1039 EIKDRAAETAEAAKNKTAETAEVTKNKALEMKDAAKDRTAETTDAA 1176
>TC232681 weakly similar to GB|AAP21377.1|30102918|BT006569 At1g47970
{Arabidopsis thaliana;} , partial (39%)
Length = 867
Score = 31.2 bits (69), Expect = 0.77
Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = +1
Query: 323 DDESEPEEDGEDGNEQHKNEDHEKE-DPQAGTSQGNNANNEN 363
D+E + E+D DG + +ED E+E D Q G ++ N+++
Sbjct: 232 DEEDDDEDDAPDGGDDDDDEDEEEESDVQRGGEPDDDDNDDD 357
Score = 28.1 bits (61), Expect = 6.5
Identities = 18/55 (32%), Positives = 25/55 (44%), Gaps = 4/55 (7%)
Frame = +1
Query: 310 GDDDISLDLLPQFDDESEPEED----GEDGNEQHKNEDHEKEDPQAGTSQGNNAN 360
GDDD DDE E EE G + ++ ++D E ED + QG A+
Sbjct: 271 GDDD---------DDEDEEEESDVQRGGEPDDDDNDDDDEDEDEEDEEEQGEEAD 408
>TC230133 weakly similar to UP|Q6VBJ3 (Q6VBJ3) Epa4p, partial (6%)
Length = 850
Score = 30.8 bits (68), Expect = 1.0
Identities = 18/58 (31%), Positives = 29/58 (49%)
Frame = +3
Query: 301 KEIKDGQVVGDDDISLDLLPQFDDESEPEEDGEDGNEQHKNEDHEKEDPQAGTSQGNN 358
K+ D + DDD D DDE + + G+DG E+ ++D DP+A G++
Sbjct: 267 KDASDTEDDDDDDNVNDGEDDNDDEEDEDFSGDDGGEEADSDD----DPEANGGGGSD 428
>TC228249 similar to UP|Q9M9V0 (Q9M9V0) F6A14.10 protein, partial (82%)
Length = 1066
Score = 30.8 bits (68), Expect = 1.0
Identities = 11/39 (28%), Positives = 24/39 (61%)
Frame = +3
Query: 321 QFDDESEPEEDGEDGNEQHKNEDHEKEDPQAGTSQGNNA 359
+ D+E E ++ N++ +ED ++E+ AG+ GN++
Sbjct: 738 ELDEEDVDSEADDEENDEDDSEDDDQEENDAGSEDGNHS 854
>TC227389 similar to UP|Q8LJS2 (Q8LJS2) Nucleolar histone deacetylase
HD2-P39, partial (63%)
Length = 1144
Score = 30.8 bits (68), Expect = 1.0
Identities = 22/81 (27%), Positives = 34/81 (41%)
Frame = +3
Query: 283 EQISVVEPGFDLSRIGWLKEIKDGQVVGDDDISLDLLPQFDDESEPEEDGEDGNEQHKNE 342
+Q+ VVEP KD + DDD D D+E E + D +++ +E
Sbjct: 510 KQVKVVEPK------------KDNEEDSDDDSDDDDFGSSDEEMEDAD--SDSDDESGDE 647
Query: 343 DHEKEDPQAGTSQGNNANNEN 363
D ++E P G NE+
Sbjct: 648 DDDEETPPKKVDLGKKRPNES 710
>TC232838 similar to GB|AAP21377.1|30102918|BT006569 At1g47970 {Arabidopsis
thaliana;} , partial (46%)
Length = 902
Score = 30.8 bits (68), Expect = 1.0
Identities = 25/116 (21%), Positives = 53/116 (45%), Gaps = 6/116 (5%)
Frame = +2
Query: 253 QKLEKKYERLNASILGRASLLFAQGFLAAKEQISVVEPGFDLSRIGWLKEIKDGQV---V 309
++ E+ +R++ S R L F + A +++S +++++ +V V
Sbjct: 143 KRREEAAQRISKSRGERNVLWFLDSKMKATKELS--------------EQVEENEVKVLV 280
Query: 310 GDDDISLDLLPQFDDESEPEEDGE---DGNEQHKNEDHEKEDPQAGTSQGNNANNE 362
+DD + + + D++E +ED E D +E N+D E + P G + + E
Sbjct: 281 EEDDEEYESVDEVVDDAEDDEDEEEDDDDDEGDDNDDEEDDAPDGGDDDDDEDDEE 448
>TC203787 similar to UP|Q6VBJ3 (Q6VBJ3) Epa4p, partial (6%)
Length = 1056
Score = 30.8 bits (68), Expect = 1.0
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Frame = -3
Query: 302 EIKDGQVVGDDDISLDLLPQFDDESEP---EEDGEDGNEQHKNEDHEKED 348
E +DG DDD D DD+ E EE+ EDG E +NE+ E+++
Sbjct: 442 EDEDGDDQDDDDEDDD-----DDDEEDEAGEEEDEDGAEDEENEEDEEDE 308
Score = 29.6 bits (65), Expect = 2.2
Identities = 14/41 (34%), Positives = 23/41 (55%)
Frame = -3
Query: 323 DDESEPEEDGEDGNEQHKNEDHEKEDPQAGTSQGNNANNEN 363
DDE + ++DG+ G E E+ + G GNN+NN++
Sbjct: 613 DDEGDDDDDGDGGF----GEGEEELSSEDGGGYGNNSNNKS 503
Score = 28.5 bits (62), Expect = 5.0
Identities = 9/31 (29%), Positives = 21/31 (67%)
Frame = -3
Query: 325 ESEPEEDGEDGNEQHKNEDHEKEDPQAGTSQ 355
E + +EDG+D ++ +++D + E+ +AG +
Sbjct: 451 EEDEDEDGDDQDDDDEDDDDDDEEDEAGEEE 359
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.308 0.127 0.350
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,550,232
Number of Sequences: 63676
Number of extensions: 158933
Number of successful extensions: 1087
Number of sequences better than 10.0: 85
Number of HSP's better than 10.0 without gapping: 955
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1047
length of query: 365
length of database: 12,639,632
effective HSP length: 99
effective length of query: 266
effective length of database: 6,335,708
effective search space: 1685298328
effective search space used: 1685298328
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 59 (27.3 bits)
Lotus: description of TM0219.2