BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0218.28
(278 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC205045 similar to UP|P93166 (P93166) SCOF-1, partial (45%) 340 3e-94
TC205046 similar to UP|P93166 (P93166) SCOF-1, partial (43%) 338 1e-93
TC216904 UP|P93166 (P93166) SCOF-1, complete 213 8e-56
TC209064 similar to UP|P93166 (P93166) SCOF-1, partial (93%) 199 1e-51
TC203387 similar to UP|Q9XEU0 (Q9XEU0) Zinc-finger protein 1, pa... 188 2e-48
TC203295 similar to UP|P93166 (P93166) SCOF-1, partial (52%) 180 6e-46
TC221557 similar to UP|Q43614 (Q43614) DNA-binding protein, part... 98 5e-21
CD409939 similar to PIR|S19159|S191 finger protein EPF1 - garden... 86 1e-17
BM093731 similar to GP|2346978|dbj| ZPT2-14 {Petunia x hybrida},... 86 2e-17
BM187968 homologue to GP|2346974|dbj| ZPT2-12 {Petunia x hybrida... 80 1e-15
TC210918 homologue to UP|P93713 (P93713) PEThy;ZPT2-5, partial (... 79 3e-15
TC220446 similar to UP|O22083 (O22083) ZPT2-11, partial (24%) 78 4e-15
TC219656 similar to UP|O22086 (O22086) ZPT2-14, partial (57%) 77 1e-14
TC230715 similar to UP|Q39217 (Q39217) Zinc finger protein, part... 74 7e-14
TC234818 similar to UP|O22082 (O22082) C2H2 zinc-finger protein ... 72 2e-13
TC203979 similar to UP|O22086 (O22086) ZPT2-14, partial (39%) 72 2e-13
TC203987 similar to UP|O22084 (O22084) ZPT2-12, partial (37%) 70 1e-12
TC233289 69 2e-12
AW102471 68 5e-12
BE807394 65 4e-11
>TC205045 similar to UP|P93166 (P93166) SCOF-1, partial (45%)
Length = 1150
Score = 340 bits (873), Expect = 3e-94
Identities = 177/273 (64%), Positives = 204/273 (73%), Gaps = 2/273 (0%)
Frame = +2
Query: 1 MALETLNSPTAATTPFRSSYQQEEEEEE--LHHHEPWTKKKRSKRPRFDNPTTTEEEYLA 58
MALE LNSPTAATTPFR YQ+EEE+EE LH EPW K+KRSKRPRF+ TEEEYLA
Sbjct: 98 MALEALNSPTAATTPFRG-YQEEEEDEEADLHLREPWAKRKRSKRPRFE----TEEEYLA 262
Query: 59 LCLIMLAQSGNNNNKNNNTDNNTNTLRAESSSNSQSQSPPQQQPPLKLTHKCSVCDKAFP 118
LCLIMLAQSGN N +NN + S S S + PP+KLTH+C+VC+KAF
Sbjct: 263 LCLIMLAQSGNTRNIHNNN----------TQLPSSSLSDKEASPPVKLTHRCTVCNKAFG 412
Query: 119 SYQALGGHKASHRKSSSENQTPAAAAVNDNASVSTSTGNGGKMHECSICHKSFPTGQALG 178
SYQALGGHKASHRK+SSE+ A+ + N SVS ST GG+MHECSICHKSFPTGQALG
Sbjct: 413 SYQALGGHKASHRKASSESNPTASVSALANDSVSASTVGGGRMHECSICHKSFPTGQALG 592
Query: 179 GHKRCHYEGGKSSNSTNSNVHANTSSAVTTTSDGGAASAHSLRGFDLNLPAPLTEFWTPL 238
GHKRCHY+GG +N +NSN + N SS TT+ G A+S+H+LRGFDLNLPAPLTEFW+P+
Sbjct: 593 GHKRCHYDGG--NNHSNSNANGNNSSGATTSDGGAASSSHTLRGFDLNLPAPLTEFWSPM 766
Query: 239 GIGGGDSRTNKIRSGEQEVESPLPVTAKRPRLF 271
G G + GEQEVESPLPVTAKRPRLF
Sbjct: 767 GFDFGKKKV----GGEQEVESPLPVTAKRPRLF 853
>TC205046 similar to UP|P93166 (P93166) SCOF-1, partial (43%)
Length = 1110
Score = 338 bits (868), Expect = 1e-93
Identities = 182/276 (65%), Positives = 206/276 (73%), Gaps = 5/276 (1%)
Frame = +1
Query: 1 MALETLNSPTAATTPFRSSYQQEEEEEELHHHEPWTKKKRSKRPRFDNPTTTEEEYLALC 60
MALE LNSPTAATTPFR YQ+EEEE +LH EPW K+KRSKRPRF++ EEEYLALC
Sbjct: 46 MALEALNSPTAATTPFRG-YQEEEEEVDLHLREPWAKRKRSKRPRFES----EEEYLALC 210
Query: 61 LIMLAQSGNNNNKNNNTDNNTNTLRAESSSNSQSQSPPQQQPPLKLTHKCSVCDKAFPSY 120
LIMLAQSGNNNN + S SQS + PPLKL+H+C+VC+KAFPSY
Sbjct: 211 LIMLAQSGNNNN---------------TQLPSSSQSHKEASPPLKLSHRCTVCNKAFPSY 345
Query: 121 QALGGHKASHRKSSSENQTPAAA---AVNDNASVSTSTGNGGKMHECSICHKSFPTGQAL 177
QALGGHKASHRK+SSE+ T A+A + N SVS ST GG+MHECSICHKSFPTGQAL
Sbjct: 346 QALGGHKASHRKASSESNTTASAVAVSATANDSVSASTVGGGRMHECSICHKSFPTGQAL 525
Query: 178 GGHKRCHYEGGKSSNSTNSNVHANTSSAVTTTSDGGAA--SAHSLRGFDLNLPAPLTEFW 235
GGHKRCHY+GG +N +NSN + N SS V TTSDGGAA S+H+ RGFDLNLPAPLTEFW
Sbjct: 526 GGHKRCHYDGG--NNHSNSNANGNNSSGV-TTSDGGAASSSSHAFRGFDLNLPAPLTEFW 696
Query: 236 TPLGIGGGDSRTNKIRSGEQEVESPLPVTAKRPRLF 271
+P G G + EQEVESPLPVTAKRPRLF
Sbjct: 697 SPAGFDFGKKKVGV----EQEVESPLPVTAKRPRLF 792
>TC216904 UP|P93166 (P93166) SCOF-1, complete
Length = 1114
Score = 213 bits (542), Expect = 8e-56
Identities = 132/278 (47%), Positives = 163/278 (58%), Gaps = 7/278 (2%)
Frame = +2
Query: 1 MALETLNSPTAATTPFRSSYQQEEEEEELHHHEPWTKKKRSKRPRFDNPTTTEEEYLALC 60
MALE LNSPT F ++ + PW K+KRSKR R D+P+ EEEYLALC
Sbjct: 206 MALEALNSPTTTAPSFPF------DDPTI----PWAKRKRSKRSR-DHPS--EEEYLALC 346
Query: 61 LIMLAQSGNNNNKNNNTDNNTNTLRAESSSNSQSQSPPQQQPPLKLTHKCSVCDKAFPSY 120
LIMLA+ G N + S Q Q P P KL++KCSVCDK+FPSY
Sbjct: 347 LIMLARGGTTTVNNRHV----------SPPPPQPQPQPTPDPSTKLSYKCSVCDKSFPSY 496
Query: 121 QALGGHKASHRK--SSSENQTPAAAAVNDNASVSTSTGNGGKMHECSICHKSFPTGQALG 178
QALGGHKASHRK ++E+Q P+ +++ +TS+ +GGK HECSICHKSFPTGQALG
Sbjct: 497 QALGGHKASHRKLAGAAEDQPPSTTT---SSAAATSSASGGKAHECSICHKSFPTGQALG 667
Query: 179 GHKRCHYEGGKSSNSTNSNVHANTSSAVTTTSDGGAASAHSL-----RGFDLNLPAPLTE 233
GHKRCHYEG + N+ NSN +V T + G S H++ R FDLN+PA +
Sbjct: 668 GHKRCHYEGNGNGNNNNSN-------SVVTVASEGVGSTHTVSHGHHRDFDLNIPA-FPD 823
Query: 234 FWTPLGIGGGDSRTNKIRSGEQEVESPLPVTAKRPRLF 271
F T + GE EVESP PV K+PRLF
Sbjct: 824 FST--------------KVGEDEVESPHPV-MKKPRLF 892
>TC209064 similar to UP|P93166 (P93166) SCOF-1, partial (93%)
Length = 945
Score = 199 bits (506), Expect = 1e-51
Identities = 129/275 (46%), Positives = 155/275 (55%), Gaps = 5/275 (1%)
Frame = +3
Query: 1 MALETLNSPTAATTPFRSSYQQEEEEEELHHHEPWTKKKRSKRPRFDNPTTTEEEYLALC 60
MALETLNSPT F ++ + PW K+KRSKR D+P+ EEEYLALC
Sbjct: 93 MALETLNSPTTTAPSFPF------DDPTI----PWAKRKRSKRCSRDHPS--EEEYLALC 236
Query: 61 LIMLAQSGNNNNKNNNTDNNTNTLRAESSSNSQSQSPPQQQPPLKLTHKCSVCDKAFPSY 120
LIMLA+ G T R S+ Q P P KL++KCSVC+K+FPSY
Sbjct: 237 LIMLARGG--------------TTRRVSTPPPQ----PTPDPSTKLSYKCSVCNKSFPSY 362
Query: 121 QALGGHKASHRKSSSENQTPAAAAVNDNASVSTSTGNGGKMHECSICHKSFPTGQALGGH 180
QALGGHKASHRK ++ + AS S +T +GG+ HECSICHKSFPTGQALGGH
Sbjct: 363 QALGGHKASHRKLAASGGEDQPTTTSSAAS-SANTASGGRTHECSICHKSFPTGQALGGH 539
Query: 181 KRCHYEGGKSSNSTNSNVHANTSSAVTTTSDGGAASAHSL-----RGFDLNLPAPLTEFW 235
KRCHYEG + N+ NSN S+VT S+ G S H++ R FDLN+PA
Sbjct: 540 KRCHYEGNSNGNNNNSN------SSVTAASE-GVGSTHTVSHGHHRDFDLNIPA------ 680
Query: 236 TPLGIGGGDSRTNKIRSGEQEVESPLPVTAKRPRL 270
P G + GE EVESP PV K RL
Sbjct: 681 FPDG---------STKVGEDEVESPHPVMKKPGRL 758
>TC203387 similar to UP|Q9XEU0 (Q9XEU0) Zinc-finger protein 1, partial (51%)
Length = 1474
Score = 188 bits (478), Expect = 2e-48
Identities = 116/236 (49%), Positives = 140/236 (59%), Gaps = 7/236 (2%)
Frame = +3
Query: 1 MALETLNSPTAATTPFRSSYQQEEEEEELHHHEPWTKKKRSKRPRFD----NPTTTEEEY 56
MALE L SPT AT S+ EE + PWTK KRSKR R + +P+ TEEEY
Sbjct: 87 MALEALQSPTTATP----SFSPFEETSLSYLETPWTKGKRSKRSRTEQQLQHPSCTEEEY 254
Query: 57 LALCLIMLAQSGNNN---NKNNNTDNNTNTLRAESSSNSQSQSPPQQQPPLKLTHKCSVC 113
LALCLIMLA+ G + K +DNN+ L A KL++KCSVC
Sbjct: 255 LALCLIMLARGGAGSVSTAKPAVSDNNSAPLSAA-----------------KLSYKCSVC 383
Query: 114 DKAFPSYQALGGHKASHRKSSSENQTPAAAAVNDNASVSTSTGNGGKMHECSICHKSFPT 173
+KAF SYQALGGHKASHRK + EN P ++AV + S+++ GG+ HECSICHK+F T
Sbjct: 384 NKAFSSYQALGGHKASHRKLAGENH-PTSSAV----TTSSASNGGGRTHECSICHKTFST 548
Query: 174 GQALGGHKRCHYEGGKSSNSTNSNVHANTSSAVTTTSDGGAASAHSLRGFDLNLPA 229
GQALGGHKRCHYEGG +SAVT + G+ S R FDLNLPA
Sbjct: 549 GQALGGHKRCHYEGG--------------NSAVTASEGVGSTHTGSHRDFDLNLPA 674
>TC203295 similar to UP|P93166 (P93166) SCOF-1, partial (52%)
Length = 1328
Score = 180 bits (457), Expect = 6e-46
Identities = 110/233 (47%), Positives = 131/233 (56%), Gaps = 4/233 (1%)
Frame = +3
Query: 1 MALETLNSPTAATTPFRSSYQQEEEEEELHHHEPWTKKKRSKRPRFD----NPTTTEEEY 56
MALE L SP AT S+ EE + PWTK KRSKR R + + + TEEEY
Sbjct: 96 MALEALQSPRTATP----SFSPFEETNLSYLETPWTKGKRSKRSRMEQQLQHSSCTEEEY 263
Query: 57 LALCLIMLAQSGNNNNKNNNTDNNTNTLRAESSSNSQSQSPPQQQPPLKLTHKCSVCDKA 116
LALCLIMLA G + A + S + S P P KL++KCSVC+KA
Sbjct: 264 LALCLIMLAHGGAGG------------VPAAKPAVSDNNSAPL--PAAKLSYKCSVCNKA 401
Query: 117 FPSYQALGGHKASHRKSSSENQTPAAAAVNDNASVSTSTGNGGKMHECSICHKSFPTGQA 176
F SYQALGGHKASHRK E+ + ++A +AS G + HECSIC K+FPTGQA
Sbjct: 402 FSSYQALGGHKASHRKLGGEHHSTSSAVTTSSAS-----NGGARTHECSICQKTFPTGQA 566
Query: 177 LGGHKRCHYEGGKSSNSTNSNVHANTSSAVTTTSDGGAASAHSLRGFDLNLPA 229
LGGHKRCHYEGG +SAVT + G+ S R FDLNLPA
Sbjct: 567 LGGHKRCHYEGG--------------NSAVTASEGVGSTHTGSHRDFDLNLPA 683
>TC221557 similar to UP|Q43614 (Q43614) DNA-binding protein, partial (39%)
Length = 1114
Score = 97.8 bits (242), Expect = 5e-21
Identities = 81/279 (29%), Positives = 120/279 (42%), Gaps = 80/279 (28%)
Frame = +3
Query: 32 HEPWTKKKRSKRPRFDNP-----------------TTT---EEEYLALCLIMLAQSGNNN 71
H K KR+KR R +P TTT EEE +A CLI+LAQ G ++
Sbjct: 156 HNGIAKGKRTKRMRLLSPCGVVATTVTSSTSSASSTTTYESEEEDMANCLILLAQGGESH 335
Query: 72 N---------------------------KNNNTDNNTNTLRAESSSNSQSQSPPQQQPPL 104
+ K N+++ NT T +++N+ ++
Sbjct: 336 HHPPRHDKQQVEDHGLENCDDGAIKTEEKGNSSNVNTTTAATTTAANNNTKVG------- 494
Query: 105 KLTHKCSVCDKAFPSYQALGGHKASHRK---SSSENQTPAA------------------- 142
++C C++ FPS+QALGGH+ASH+K ++ E + P
Sbjct: 495 FYIYECKTCNRTFPSFQALGGHRASHKKPKLAAEEKKQPLPPSPLPPPTPSQLQHMIVTN 674
Query: 143 ------AAVNDNASVSTSTGNGG-----KMHECSICHKSFPTGQALGGHKRCHYEGGKSS 191
+V +S GN G K+HECSIC F +GQALGGH R H ++S
Sbjct: 675 YDRFEEGSVKSGPPISLQLGNNGNNNKGKIHECSICGSEFTSGQALGGHMRRH----RAS 842
Query: 192 NSTNSNVHANTSSAVTTTSDGGAASAHSLRGFDLNLPAP 230
+ N+ V + + V TT+ A ++ DLNLPAP
Sbjct: 843 TNANNVVDTTSCNTVITTTI-TAVPPRNILQLDLNLPAP 956
>CD409939 similar to PIR|S19159|S191 finger protein EPF1 - garden petunia,
partial (35%)
Length = 657
Score = 86.3 bits (212), Expect = 1e-17
Identities = 53/154 (34%), Positives = 74/154 (47%), Gaps = 31/154 (20%)
Frame = -2
Query: 108 HKCSVCDKAFPSYQALGGHKASHRK---SSSENQTPAAAA-------------------- 144
++C C++ FPS+QALGGH+ASH+K ++ E + P
Sbjct: 623 YECKTCNRTFPSFQALGGHRASHKKPKLAAEEKKQPLPPPAQPSPPSQLQHMIVTNYDRF 444
Query: 145 ----VNDNASVSTSTGNGG----KMHECSICHKSFPTGQALGGHKRCHYEGGKSSNSTNS 196
V +S GN G K+HECSIC F +GQALGGH R H ++S +TN+
Sbjct: 443 EEGNVKSGPPISLQLGNNGNNKGKIHECSICGSEFTSGQALGGHMRRH----RASTNTNT 276
Query: 197 NVHANTSSAVTTTSDGGAASAHSLRGFDLNLPAP 230
V T +T+ A ++ DLNLPAP
Sbjct: 275 TVVDTTRCNTVSTTIITTAPPRNILQLDLNLPAP 174
Score = 37.0 bits (84), Expect = 0.010
Identities = 14/33 (42%), Positives = 23/33 (69%)
Frame = -2
Query: 152 STSTGNGGKMHECSICHKSFPTGQALGGHKRCH 184
+ +T G ++EC C+++FP+ QALGGH+ H
Sbjct: 653 AATTKVGFYIYECKTCNRTFPSFQALGGHRASH 555
>BM093731 similar to GP|2346978|dbj| ZPT2-14 {Petunia x hybrida}, partial
(39%)
Length = 421
Score = 85.9 bits (211), Expect = 2e-17
Identities = 48/128 (37%), Positives = 66/128 (51%), Gaps = 4/128 (3%)
Frame = +1
Query: 73 KNNNTDNNTNTLRAESSSNSQSQSPPQQQPPLKL----THKCSVCDKAFPSYQALGGHKA 128
+ T+ + +R S S+ + +P LK +C C++ FPS+QALGGH+A
Sbjct: 31 RQRETEAEESIIRLAESLMQLSRVQQKSKPLLKTFSPTEFECKTCNRKFPSFQALGGHRA 210
Query: 129 SHRKSSSENQTPAAAAVNDNASVSTSTGNGGKMHECSICHKSFPTGQALGGHKRCHYEGG 188
SH+K E + + + A S GN KMHECSIC F GQALGGH R H G
Sbjct: 211 SHKKPKFEGEE-----LKEEAKKGLSLGNKPKMHECSICGMEFSLGQALGGHMRKH-RGA 372
Query: 189 KSSNSTNS 196
S N+ +
Sbjct: 373 TSENNNEA 396
>BM187968 homologue to GP|2346974|dbj| ZPT2-12 {Petunia x hybrida}, partial
(29%)
Length = 424
Score = 79.7 bits (195), Expect = 1e-15
Identities = 44/93 (47%), Positives = 53/93 (56%), Gaps = 6/93 (6%)
Frame = +2
Query: 96 SPPQQQPPLKLTH------KCSVCDKAFPSYQALGGHKASHRKSSSENQTPAAAAVNDNA 149
S PQQ L T +C C++ F S+QALGGH+ASH++S E A A+
Sbjct: 161 SHPQQNKKLLQTKIEAVKFECKTCNRKFSSFQALGGHRASHKRSKLEGDELKAHAI---- 328
Query: 150 SVSTSTGNGGKMHECSICHKSFPTGQALGGHKR 182
S S GN KMHECSIC + F GQALGGH R
Sbjct: 329 --SLSLGNKPKMHECSICGQEFSLGQALGGHMR 421
Score = 31.2 bits (69), Expect = 0.54
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +2
Query: 163 ECSICHKSFPTGQALGGHKRCH 184
EC C++ F + QALGGH+ H
Sbjct: 218 ECKTCNRKFSSFQALGGHRASH 283
>TC210918 homologue to UP|P93713 (P93713) PEThy;ZPT2-5, partial (55%)
Length = 729
Score = 78.6 bits (192), Expect = 3e-15
Identities = 40/112 (35%), Positives = 65/112 (57%)
Frame = +3
Query: 109 KCSVCDKAFPSYQALGGHKASHRKSSSENQTPAAAAVNDNASVSTSTGNGGKMHECSICH 168
+C C++ F S+QALGGH+ASH+K P +D+ + + K HECSIC
Sbjct: 219 ECKTCNRRFASFQALGGHRASHKK-------PRLMGESDSQVLIHGSPPKPKTHECSICG 377
Query: 169 KSFPTGQALGGHKRCHYEGGKSSNSTNSNVHANTSSAVTTTSDGGAASAHSL 220
F GQALGGH R H +++ ++N N+H +S +++++ GG+ ++L
Sbjct: 378 LEFAIGQALGGHMRRH----RAAAASNGNMHTTINSWLSSSNSGGSTVDNTL 521
Score = 44.3 bits (103), Expect = 6e-05
Identities = 34/119 (28%), Positives = 49/119 (40%), Gaps = 18/119 (15%)
Frame = +3
Query: 57 LALCLIMLAQSGNNNNKNNNTDNNTNTLRAESSS------------------NSQSQSPP 98
+A L++L+++ N N +NN T +S S SQ
Sbjct: 150 MANYLMLLSRTTTNLNTSNNRVFECKTCNRRFASFQALGGHRASHKKPRLMGESDSQVLI 329
Query: 99 QQQPPLKLTHKCSVCDKAFPSYQALGGHKASHRKSSSENQTPAAAAVNDNASVSTSTGN 157
PP TH+CS+C F QALGGH HR +++ N +N S S S G+
Sbjct: 330 HGSPPKPKTHECSICGLEFAIGQALGGHMRRHRAAAASNGN-MHTTINSWLSSSNSGGS 503
Score = 32.0 bits (71), Expect = 0.32
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +3
Query: 157 NGGKMHECSICHKSFPTGQALGGHKRCH 184
+ ++ EC C++ F + QALGGH+ H
Sbjct: 201 SNNRVFECKTCNRRFASFQALGGHRASH 284
>TC220446 similar to UP|O22083 (O22083) ZPT2-11, partial (24%)
Length = 668
Score = 78.2 bits (191), Expect = 4e-15
Identities = 56/154 (36%), Positives = 75/154 (48%), Gaps = 38/154 (24%)
Frame = +1
Query: 115 KAFPSYQALGGHKASHRKSSSENQT-----------PAAAAVNDN--------------A 149
+ FPS+QALGGH+ASH+K E + PA+++ N
Sbjct: 4 RTFPSFQALGGHRASHKKPKMEEKKLLSPPLLLPPLPASSSSLFNFEEAKQSHMKNIISP 183
Query: 150 SVSTSTG------------NGGKMHECSICHKSFPTGQALGGHKRCHYEGGKSSNSTNSN 197
SVS G N K+HECSIC F +GQALGGH R H ++SN+ N+
Sbjct: 184 SVSLQLGCGINKVGLNFHGNKSKIHECSICGSEFTSGQALGGHMRRH----RASNNNNNI 351
Query: 198 VHANTSSAVTTTSDGGA-ASAHSLRGFDLNLPAP 230
V T++ TTTS+G ++ DLNLPAP
Sbjct: 352 V--QTTTTTTTTSNGAVDVKPRNVLELDLNLPAP 447
>TC219656 similar to UP|O22086 (O22086) ZPT2-14, partial (57%)
Length = 797
Score = 76.6 bits (187), Expect = 1e-14
Identities = 43/107 (40%), Positives = 59/107 (54%)
Frame = +3
Query: 109 KCSVCDKAFPSYQALGGHKASHRKSSSENQTPAAAAVNDNASVSTSTGNGGKMHECSICH 168
+C C++ FPS+QALGGH+ASH+K P A + + + K HECSIC
Sbjct: 249 ECKTCNRQFPSFQALGGHRASHKK-------PRLMAGDIEGQLLHDSPPKPKTHECSICG 407
Query: 169 KSFPTGQALGGHKRCHYEGGKSSNSTNSNVHANTSSAVTTTSDGGAA 215
F GQALGGH R H + + N NVH +S T++S GG++
Sbjct: 408 LEFAIGQALGGHMRRH-----RAANLNGNVH---NSTATSSSSGGSS 524
Score = 43.9 bits (102), Expect = 8e-05
Identities = 26/66 (39%), Positives = 33/66 (49%), Gaps = 2/66 (3%)
Frame = +3
Query: 102 PPLKLTHKCSVCDKAFPSYQALGGHKASHRKSSSENQTPAAAAVNDNA--SVSTSTGNGG 159
PP TH+CS+C F QALGGH HR AA +N N S +TS+ +GG
Sbjct: 369 PPKPKTHECSICGLEFAIGQALGGHMRRHR----------AANLNGNVHNSTATSSSSGG 518
Query: 160 KMHECS 165
+ S
Sbjct: 519 SSFDSS 536
Score = 38.1 bits (87), Expect = 0.004
Identities = 14/32 (43%), Positives = 21/32 (64%)
Frame = +3
Query: 153 TSTGNGGKMHECSICHKSFPTGQALGGHKRCH 184
+ST ++ EC C++ FP+ QALGGH+ H
Sbjct: 219 SSTSMSNRVFECKTCNRQFPSFQALGGHRASH 314
>TC230715 similar to UP|Q39217 (Q39217) Zinc finger protein, partial (41%)
Length = 629
Score = 73.9 bits (180), Expect = 7e-14
Identities = 50/152 (32%), Positives = 66/152 (42%), Gaps = 19/152 (12%)
Frame = +2
Query: 74 NNNTDNNTNTLRAESSSNSQSQS--------------PPQQQPPLKLTH-----KCSVCD 114
N NT NN + N ++ Q PL T +C C+
Sbjct: 5 NTNTFNNMVAILKRQGENESEETIIGLAKSLMQLSRVQQQSNKPLLKTFSPTEFECKTCN 184
Query: 115 KAFPSYQALGGHKASHRKSSSENQTPAAAAVNDNASVSTSTGNGGKMHECSICHKSFPTG 174
+ F S+QALGGH+ASH+K E A + + A + KMHECSIC F G
Sbjct: 185 RKFSSFQALGGHRASHKKPKFE-----AEELKEEAKKTKP-----KMHECSICGMEFSLG 334
Query: 175 QALGGHKRCHYEGGKSSNSTNSNVHANTSSAV 206
QALGGH R H G S N N+ ++ A+
Sbjct: 335 QALGGHMRKH-RGAISENDNNNEALSSIKQAI 427
>TC234818 similar to UP|O22082 (O22082) C2H2 zinc-finger protein ZPT2-10,
partial (19%)
Length = 684
Score = 72.4 bits (176), Expect = 2e-13
Identities = 52/187 (27%), Positives = 77/187 (40%), Gaps = 7/187 (3%)
Frame = +3
Query: 51 TTEEEYLALCLIMLAQSGNNNNKNNNTDN--NTNTLRAESSSNSQSQSPPQQQPPLKLT- 107
T+ EE +A+CL+ML++ + N N N + + + E + + + +KL
Sbjct: 24 TSPEEDVAMCLMMLSRDRWSKYYNINVVNVNDEDVVEEEEEEEEEEEEGGRSVLEIKLRR 203
Query: 108 ----HKCSVCDKAFPSYQALGGHKASHRKSSSENQTPAAAAVNDNASVSTSTGNGGKMHE 163
H+C C K F S +ALG H+ S+ +GN + +
Sbjct: 204 VRGKHQCQSCGKTFRSSRALGSHR----------------------SICEGSGNDSNIFQ 317
Query: 164 CSICHKSFPTGQALGGHKRCHYEGGKSSNSTNSNVHANTSSAVTTTSDGGAASAHSLRGF 223
C C K F +GQALGGHKR H S+ + N +V S
Sbjct: 318 CPFCSKVFGSGQALGGHKRSHLMPSSSTTANNDSVRLKESF------------------I 443
Query: 224 DLNLPAP 230
DLNLPAP
Sbjct: 444 DLNLPAP 464
>TC203979 similar to UP|O22086 (O22086) ZPT2-14, partial (39%)
Length = 820
Score = 72.4 bits (176), Expect = 2e-13
Identities = 52/163 (31%), Positives = 74/163 (44%), Gaps = 10/163 (6%)
Frame = +3
Query: 32 HEPWTKKKRSKRPRFDNPTTTEEEYLALCLIMLAQSGNNNNKNN------NTDNNTNTLR 85
H+ +KK+ R T ++L ++L +S + NN D+N +L
Sbjct: 54 HQANLEKKKYTRSIQTKKWTHNT*KISLFFLLLNRSAISYMNNNMLGMKRRRDDNEGSLD 233
Query: 86 AESS----SNSQSQSPPQQQPPLKLTHKCSVCDKAFPSYQALGGHKASHRKSSSENQTPA 141
S + QQ+ + +C C++ F S+QALGGH+ASH++ E +
Sbjct: 234 LAKCLMLFSCPIESNKTQQKSFGSVEFECKTCNRKFSSFQALGGHRASHKRQKLEGEELK 413
Query: 142 AAAVNDNASVSTSTGNGGKMHECSICHKSFPTGQALGGHKRCH 184
A S S N KMHECSIC F GQALGGH R H
Sbjct: 414 EQAK------SLSLWNKPKMHECSICGLEFSLGQALGGHMRKH 524
Score = 35.8 bits (81), Expect = 0.022
Identities = 15/29 (51%), Positives = 18/29 (61%)
Frame = +3
Query: 108 HKCSVCDKAFPSYQALGGHKASHRKSSSE 136
H+CS+C F QALGGH HR S +E
Sbjct: 456 HECSICGLEFSLGQALGGHMRKHRASLNE 542
>TC203987 similar to UP|O22084 (O22084) ZPT2-12, partial (37%)
Length = 742
Score = 70.1 bits (170), Expect = 1e-12
Identities = 35/76 (46%), Positives = 43/76 (56%)
Frame = +1
Query: 109 KCSVCDKAFPSYQALGGHKASHRKSSSENQTPAAAAVNDNASVSTSTGNGGKMHECSICH 168
+C C + F S+QALGGH+ASH++ E + A + S N KMHECSIC
Sbjct: 241 ECKTCSRKFSSFQALGGHRASHKRQKLEGEELKEQAK------TLSLWNKPKMHECSICG 402
Query: 169 KSFPTGQALGGHKRCH 184
F GQALGGH R H
Sbjct: 403 LEFSLGQALGGHMRKH 450
Score = 34.7 bits (78), Expect = 0.049
Identities = 14/29 (48%), Positives = 18/29 (61%)
Frame = +1
Query: 108 HKCSVCDKAFPSYQALGGHKASHRKSSSE 136
H+CS+C F QALGGH HR + +E
Sbjct: 382 HECSICGLEFSLGQALGGHMRKHRAALNE 468
Score = 32.0 bits (71), Expect = 0.32
Identities = 13/29 (44%), Positives = 16/29 (54%)
Frame = +1
Query: 156 GNGGKMHECSICHKSFPTGQALGGHKRCH 184
G G EC C + F + QALGGH+ H
Sbjct: 220 GFGAVEFECKTCSRKFSSFQALGGHRASH 306
>TC233289
Length = 961
Score = 68.9 bits (167), Expect = 2e-12
Identities = 56/180 (31%), Positives = 79/180 (43%)
Frame = +1
Query: 51 TTEEEYLALCLIMLAQSGNNNNKNNNTDNNTNTLRAESSSNSQSQSPPQQQPPLKLTHKC 110
T+ EE LA+CL+ML++ +K N + S S + + ++ H C
Sbjct: 487 TSPEEDLAMCLMMLSRDTWQEHKLANA--------GPPKTRCSSGSEIKLKNKVRSKHLC 642
Query: 111 SVCDKAFPSYQALGGHKASHRKSSSENQTPAAAAVNDNASVSTSTGNGGKMHECSICHKS 170
C K+F S +ALG H+ +P A N+ S + N K+ EC C+K
Sbjct: 643 HACHKSFRSSRALGSHRTLC--------SPRLEAQNN----SIISNNNIKVFECPFCYKL 786
Query: 171 FPTGQALGGHKRCHYEGGKSSNSTNSNVHANTSSAVTTTSDGGAASAHSLRGFDLNLPAP 230
F +GQALGGHKR H SS++ N +V S DLNLPAP
Sbjct: 787 FGSGQALGGHKRSHLI-PSSSSTVNHSVKLKQSF------------------IDLNLPAP 909
Score = 36.6 bits (83), Expect = 0.013
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = +1
Query: 162 HECSICHKSFPTGQALGGHKRCH 184
H+C +C +SF G+ALGGH + H
Sbjct: 166 HKCKLCSRSFSNGRALGGHMKAH 234
Score = 33.5 bits (75), Expect = 0.11
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +1
Query: 108 HKCSVCDKAFPSYQALGGHKASHRKS 133
HKC +C ++F + +ALGGH +H S
Sbjct: 166 HKCKLCSRSFSNGRALGGHMKAHLAS 243
>AW102471
Length = 361
Score = 67.8 bits (164), Expect = 5e-12
Identities = 58/138 (42%), Positives = 69/138 (49%), Gaps = 7/138 (5%)
Frame = +2
Query: 2 ALETLNSPTAATTPFRSSYQQEEEEEELHHHEPWTKKKR-SKRPRFDNPTTT---EEEYL 57
ALE SPT AT P SS+ EE P TK KR S R N T+ +
Sbjct: 2 ALEVF*SPTTAT-P*LSSF---EETRPSLFETPGTKGKRISVSARSINCNTSYAPRKSTC 169
Query: 58 ALCLIMLAQSGNNN---NKNNNTDNNTNTLRAESSSNSQSQSPPQQQPPLKLTHKCSVCD 114
ALCL+MLA+ G + K +DNN+ L KL++KCSVC+
Sbjct: 170 ALCLMMLARGGAGSVYTAKPAVSDNNSAPLSCA-----------------KLSYKCSVCN 298
Query: 115 KAFPSYQALGGHKASHRK 132
KAF SYQALGGH ASHRK
Sbjct: 299 KAFCSYQALGGHMASHRK 352
Score = 37.0 bits (84), Expect = 0.010
Identities = 19/44 (43%), Positives = 26/44 (58%)
Frame = +2
Query: 141 AAAAVNDNASVSTSTGNGGKMHECSICHKSFPTGQALGGHKRCH 184
A AV+DN S S ++CS+C+K+F + QALGGH H
Sbjct: 221 AKPAVSDNNSAPLSCAK--LSYKCSVCNKAFCSYQALGGHMASH 346
>BE807394
Length = 262
Score = 64.7 bits (156), Expect = 4e-11
Identities = 41/95 (43%), Positives = 51/95 (53%), Gaps = 2/95 (2%)
Frame = +2
Query: 40 RSKRPRFDNPTTTEEEYLALCLIMLAQSGNNNNKNNNTDNNTNTLRAESSSNSQSQSPPQ 99
RSKR ++P+ EEE+LALCLIMLA+ G ++ S PPQ
Sbjct: 2 RSKRCSRNHPS--EEEFLALCLIMLARGG--------------------TTRRVSTPPPQ 115
Query: 100 QQPP--LKLTHKCSVCDKAFPSYQALGGHKASHRK 132
P L +C C+K FPSY ALGGHKA+HRK
Sbjct: 116 PTPDPFTTLRCRCFCCNKRFPSYHALGGHKATHRK 220
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.307 0.123 0.356
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,317,725
Number of Sequences: 63676
Number of extensions: 208791
Number of successful extensions: 2981
Number of sequences better than 10.0: 175
Number of HSP's better than 10.0 without gapping: 2023
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2434
length of query: 278
length of database: 12,639,632
effective HSP length: 96
effective length of query: 182
effective length of database: 6,526,736
effective search space: 1187865952
effective search space used: 1187865952
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 58 (26.9 bits)
Lotus: description of TM0218.28