BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0218.18
(330 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC231987 223 7e-59
TC231225 similar to UP|Q9LJN1 (Q9LJN1) Gb|AAB92077.1, partial (10%) 168 3e-42
BU551128 129 1e-30
AW306516 100 2e-21
TC219663 similar to GB|AAA36308.1|386949|HUMMHRD5 MHC HLA-RD pro... 52 3e-07
TC214347 homologue to UP|Q43821 (Q43821) Ubiquitin conjugating e... 51 6e-07
TC217193 similar to UP|Q7XJN2 (Q7XJN2) At2g40650 protein, partia... 50 2e-06
BE058585 49 3e-06
TC219167 similar to GB|AAA36308.1|386949|HUMMHRD5 MHC HLA-RD pro... 49 4e-06
TC232471 similar to UP|NLFE_HUMAN (P18615) Negative elongation f... 48 5e-06
TC206105 weakly similar to UP|Q7RH28 (Q7RH28) Mature-parasite-in... 48 5e-06
BG650799 48 7e-06
TC212455 weakly similar to UP|Q7QIA8 (Q7QIA8) AgCP3984 (Fragment... 47 9e-06
TC214362 weakly similar to UP|Q7K0Y2 (Q7K0Y2) LD23217p, partial ... 47 2e-05
CD394138 47 2e-05
BQ610931 homologue to PIR|S33620|S3362 ADR12-2 protein - soybean... 47 2e-05
TC219166 similar to GB|AAA36308.1|386949|HUMMHRD5 MHC HLA-RD pro... 46 3e-05
AW132790 46 3e-05
TC224723 hydroxyproline-rich glycoprotein 45 3e-05
TC203738 homologue to UP|RS5_CICAR (O65731) 40S ribosomal protei... 45 6e-05
>TC231987
Length = 603
Score = 223 bits (569), Expect = 7e-59
Identities = 110/142 (77%), Positives = 117/142 (81%)
Frame = +1
Query: 189 RKRPAFREKKIQGDSGDANPAVSTERVKASHTDHPPERNERKEERSGNPRHLERHEKQIA 248
R R AFREKKI DS DANPA E VK SHTDHPPERNERK+ERS NP HL+R EK A
Sbjct: 4 RGRRAFREKKIPADSADANPASIVE-VKPSHTDHPPERNERKDERSSNPHHLDRPEKPNA 180
Query: 249 GDRAPNRSEGRRDGFSSRARYGGSGGNNNDRGRDKFNARQGYHPIKTRTEKWKHDLFQEA 308
RAPN+ E RRDGFSSRARYGGSGGNNN RGRDKFN +QGY PIKTR EKWKHDL+QE
Sbjct: 181 EGRAPNKIEARRDGFSSRARYGGSGGNNNYRGRDKFNGKQGYRPIKTRMEKWKHDLYQEV 360
Query: 309 DNDPVPKNEDDQIAKLEALLAS 330
+ DP+PKNEDDQIAKLEALLAS
Sbjct: 361 NKDPIPKNEDDQIAKLEALLAS 426
>TC231225 similar to UP|Q9LJN1 (Q9LJN1) Gb|AAB92077.1, partial (10%)
Length = 467
Score = 168 bits (426), Expect = 3e-42
Identities = 96/162 (59%), Positives = 109/162 (67%), Gaps = 3/162 (1%)
Frame = +3
Query: 1 MSHRDSDSKLRHSKFDREPSPKRYRRDGKQDRERDRDRDRERERGSERGRDRDRVTTNGG 60
MSHRDSDSK RHSKFDREPSPKRYRRDGKQ+RERDR+R VT++GG
Sbjct: 84 MSHRDSDSKRRHSKFDREPSPKRYRRDGKQERERDRNR----------------VTSDGG 215
Query: 61 GGAGGDQNPTDRDQRNLPPPPHSKQESVGAGDKKSND---HQEPPKHSAQPPRSRSYYQH 117
DQRN PP H ++E A KKSN H++ PKHS+QPPRSRSY+QH
Sbjct: 216 ------------DQRN--PPHHFRREPFDAAPKKSNSNDHHEQQPKHSSQPPRSRSYHQH 353
Query: 118 AERGNTEQVGRSAGRREAGGKAFAQSKENSERVETSQSREQR 159
ERG+T QVGRS G+REAGGK F QSKEN+E SQS EQR
Sbjct: 354 DERGSTGQVGRSNGQREAGGKVFTQSKENNE----SQSTEQR 467
>BU551128
Length = 657
Score = 129 bits (325), Expect = 1e-30
Identities = 81/163 (49%), Positives = 98/163 (59%)
Frame = -1
Query: 168 DDNLHRRDGSPERKDDPPSNTRKRPAFREKKIQGDSGDANPAVSTERVKASHTDHPPERN 227
D+ RRDG ER +RKR A EKKI DSGDAN A VK+S
Sbjct: 657 DNTFQRRDGFTER-------SRKRXAXXEKKIVVDSGDANVAA----VKSS--------- 538
Query: 228 ERKEERSGNPRHLERHEKQIAGDRAPNRSEGRRDGFSSRARYGGSGGNNNDRGRDKFNAR 287
+KEER+ NP+HL+R K A D+ R GRR GGN++ +GRDKFN R
Sbjct: 537 -QKEERNSNPQHLDRXXKHFADDKGEAR-RGRR-----------YGGNDSYKGRDKFNGR 397
Query: 288 QGYHPIKTRTEKWKHDLFQEADNDPVPKNEDDQIAKLEALLAS 330
+GY R+EKWKHDL+QE + DP+P+NEDDQIAKLEALLAS
Sbjct: 396 RGY-----RSEKWKHDLYQEVNKDPIPQNEDDQIAKLEALLAS 283
>AW306516
Length = 282
Score = 99.8 bits (247), Expect = 2e-21
Identities = 45/57 (78%), Positives = 49/57 (85%)
Frame = +1
Query: 274 GNNNDRGRDKFNARQGYHPIKTRTEKWKHDLFQEADNDPVPKNEDDQIAKLEALLAS 330
GN+N RGRDK N RQGY PIK R EKWKHDL+QE + DP+PKNEDDQIAKLEALLAS
Sbjct: 7 GNSNYRGRDKINGRQGYRPIKMRMEKWKHDLYQEVNKDPIPKNEDDQIAKLEALLAS 177
>TC219663 similar to GB|AAA36308.1|386949|HUMMHRD5 MHC HLA-RD protein {Homo
sapiens;} , partial (14%)
Length = 1176
Score = 52.4 bits (124), Expect = 3e-07
Identities = 48/172 (27%), Positives = 70/172 (39%), Gaps = 8/172 (4%)
Frame = +3
Query: 3 HRDSDSKLRHSKFDREPSPKRYR-RDGKQDRERDRDRDRERERGSERGRDRDRVTTNGGG 61
HRD D R DRE R R RD +DR+R+R RDR+R+R +R R+RDR G
Sbjct: 384 HRDRDRN-RDRDRDRERDRDRGRDRDRTRDRDRERGRDRDRDREYDRHRERDRDYEVGDP 560
Query: 62 GAGGDQNPTDRDQRNLPPPPHSKQESVGAGDKKSNDHQEPPKHSAQPPRSRSYYQHAERG 121
G ++ R + D+ ++ E + A P Y H G
Sbjct: 561 DRGRSRDRESDYDRVESKHGERNHDYEPEDDRGRHNQYEHGRRHADPDHDPERYDHYNHG 740
Query: 122 NTEQVGRSAGRREAG-------GKAFAQSKENSERVETSQSREQRDEKSQAK 166
+ + R G G+A ++S E ER QR E+S ++
Sbjct: 741 DDHGDHYNQYRDHDGMEDDYHAGRATSESHE-KERSHDVDREYQRSERSHSR 893
Score = 51.6 bits (122), Expect = 5e-07
Identities = 39/123 (31%), Positives = 55/123 (44%), Gaps = 3/123 (2%)
Frame = +3
Query: 16 DREPSPKRYRRDGKQDRERDRDRDRERERGSERGRDRDRVTTNGGGGAGGDQNPTDRDQR 75
DR+ R+ RD ++R+RDRDR+R+R+RG +R R RDR G DRD+
Sbjct: 357 DRDHREDRHHRDRDRNRDRDRDRERDRDRGRDRDRTRDRDRERG--------RDRDRDRE 512
Query: 76 NLPPPPHSKQESVGAGDK-KSNDHQE--PPKHSAQPPRSRSYYQHAERGNTEQVGRSAGR 132
+ VG D+ +S D + S R+ Y +RG Q GR
Sbjct: 513 YDRHRERDRDYEVGDPDRGRSRDRESDYDRVESKHGERNHDYEPEDDRGRHNQY--EHGR 686
Query: 133 REA 135
R A
Sbjct: 687 RHA 695
Score = 50.4 bits (119), Expect = 1e-06
Identities = 53/220 (24%), Positives = 82/220 (37%), Gaps = 8/220 (3%)
Frame = +3
Query: 23 RYRRDGKQDRERDRDRDRERER----GSERGRDRDRVTTNGGGGAGGDQNPTDRDQRNLP 78
R RD + RER RD+DRERER ER RDRD D++ DRD+
Sbjct: 261 RSSRDREISRERGRDKDRERERSREHSHERVRDRDH---------REDRHHRDRDRNRDR 413
Query: 79 PPPHSKQESVGAGDKKSNDHQEPPKHSAQPPRSRSYYQHAERGNTEQVGRSAGRREAGGK 138
+ G ++ D + R R Y +H ER +VG R + +
Sbjct: 414 DRDRERDRDRGRDRDRTRDRDR--ERGRDRDRDREYDRHRERDRDYEVG-DPDRGRSRDR 584
Query: 139 AFAQSKENSERVETSQSREQRDEKSQAKLDDNLHRR---DGSPERKDDPPSNTRKRPAFR 195
+ S+ E + E D++ + ++ R D PER D +
Sbjct: 585 ESDYDRVESKHGERNHDYEPEDDRGRHNQYEHGRRHADPDHDPERYDHYNHGDDHGDHYN 764
Query: 196 E-KKIQGDSGDANPAVSTERVKASHTDHPPERNERKEERS 234
+ + G D + +T H +R ++ ERS
Sbjct: 765 QYRDHDGMEDDYHAGRATSESHEKERSHDVDREYQRSERS 884
>TC214347 homologue to UP|Q43821 (Q43821) Ubiquitin conjugating enzyme ,
partial (36%)
Length = 899
Score = 51.2 bits (121), Expect = 6e-07
Identities = 41/160 (25%), Positives = 71/160 (43%), Gaps = 3/160 (1%)
Frame = +2
Query: 17 REPSPKRYR---RDGKQDRERDRDRDRERERGSERGRDRDRVTTNGGGGAGGDQNPTDRD 73
RE RYR R+ + +R+RDRDR+R R+ SER +DRDR+ N N +R+
Sbjct: 203 RERDRDRYRDRDRNREWERDRDRDRERYRDHDSERDQDRDRIRRN---------NERERE 355
Query: 74 QRNLPPPPHSKQESVGAGDKKSNDHQEPPKHSAQPPRSRSYYQHAERGNTEQVGRSAGRR 133
+ + + + + ++ + S RSRS + + G RS+ +R
Sbjct: 356 RERIYDYDKRSKYTERESSRDYDNGSRHYRRSRSRSRSRSRSRSLQAGTGWYESRSSPQR 535
Query: 134 EAGGKAFAQSKENSERVETSQSREQRDEKSQAKLDDNLHR 173
E +SK S ++ ++ + +K D N+ R
Sbjct: 536 E-------ESKRTSASSNLAKLKDMYGDLGDSKGDANMER 634
>TC217193 similar to UP|Q7XJN2 (Q7XJN2) At2g40650 protein, partial (88%)
Length = 1691
Score = 49.7 bits (117), Expect = 2e-06
Identities = 41/173 (23%), Positives = 68/173 (38%)
Frame = +3
Query: 3 HRDSDSKLRHSKFDREPSPKRYRRDGKQDRERDRDRDRERERGSERGRDRDRVTTNGGGG 62
H S R DR R+R D DR+ DRD DRER RG +R RDR+R
Sbjct: 846 HYRGRSPTRERDRDRRHDSHRHR-DRDYDRDYDRDYDRERGRGRDRDRDRER-------- 998
Query: 63 AGGDQNPTDRDQRNLPPPPHSKQESVGAGDKKSNDHQEPPKHSAQPPRSRSYYQHAERGN 122
DRD+ L +E G + +E + R RS+ + R
Sbjct: 999 ------DRDRDRYRL-------REEKDYGRDREGRERERREKDRDRGRRRSHSRSRSRSR 1139
Query: 123 TEQVGRSAGRREAGGKAFAQSKENSERVETSQSREQRDEKSQAKLDDNLHRRD 175
+ R+ ++ + + + +E + ++++ ++ + K DD D
Sbjct: 1140DRREHDGGDYRKRHARSSVSPRRHGDGLEDGEPKKKKKKEKKEKKDDGTDHPD 1298
>BE058585
Length = 320
Score = 48.9 bits (115), Expect = 3e-06
Identities = 24/52 (46%), Positives = 38/52 (72%), Gaps = 1/52 (1%)
Frame = +1
Query: 4 RDSDSKLRHSKFDREPSPKRYR-RDGKQDRERDRDRDRERERGSERGRDRDR 54
R S ++RH + +RE +R R R+ +++RER+R+R+RERER ER R+R+R
Sbjct: 154 RASSCRIRHQERERERERERERERERERERERERERERERERERERERERER 309
Score = 42.4 bits (98), Expect = 3e-04
Identities = 18/46 (39%), Positives = 32/46 (69%)
Frame = +3
Query: 9 KLRHSKFDREPSPKRYRRDGKQDRERDRDRDRERERGSERGRDRDR 54
+++ S+ +P R+ +++RER+R+R+RERER ER R+R+R
Sbjct: 144 RIKESELVPNSAPGERERERERERERERERERERERERERERERER 281
Score = 41.6 bits (96), Expect = 5e-04
Identities = 21/45 (46%), Positives = 33/45 (72%), Gaps = 1/45 (2%)
Frame = +2
Query: 11 RHSKFDREPSPKRYR-RDGKQDRERDRDRDRERERGSERGRDRDR 54
R + +RE +R R R+ +++RER+R+R+RERER ER R+R+R
Sbjct: 185 RERERERERERERERERERERERERERERERERERERERERERER 319
Score = 40.4 bits (93), Expect = 0.001
Identities = 20/53 (37%), Positives = 34/53 (63%)
Frame = +3
Query: 2 SHRDSDSKLRHSKFDREPSPKRYRRDGKQDRERDRDRDRERERGSERGRDRDR 54
S+R + R + + P+ R+ +++RER+R+R+RERER ER R+R+R
Sbjct: 117 SYRYEEYVQRIKESELVPNSAPGERERERERERERERERERERERERERERER 275
>TC219167 similar to GB|AAA36308.1|386949|HUMMHRD5 MHC HLA-RD protein {Homo
sapiens;} , partial (11%)
Length = 600
Score = 48.5 bits (114), Expect = 4e-06
Identities = 28/87 (32%), Positives = 44/87 (50%)
Frame = +3
Query: 28 GKQDRERDRDRDRERERGSERGRDRDRVTTNGGGGAGGDQNPTDRDQRNLPPPPHSKQES 87
G+ R RDRDRDRER+RG ER RDRDR T G + +R++ ++++
Sbjct: 162 GETRRNRDRDRDRERDRGRERDRDRDRDRTKSRDRDRGRDSDKERERE------EAERDK 323
Query: 88 VGAGDKKSNDHQEPPKHSAQPPRSRSY 114
+ +S + + HS + R S+
Sbjct: 324 LKDRGHRSRERAKDSGHSEKSKRHSSH 404
Score = 41.2 bits (95), Expect = 7e-04
Identities = 32/118 (27%), Positives = 50/118 (42%), Gaps = 8/118 (6%)
Frame = +3
Query: 7 DSKLRHSKFDREPSPKRYR-------RDGKQDRERDRDRDRERERGSERGRDRDRVTTNG 59
D + SK D +R R RD ++R+RDRDRDR + R +RGRD D+
Sbjct: 126 DEPILKSKADHIGETRRNRDRDRDRERDRGRERDRDRDRDRTKSRDRDRGRDSDKERERE 305
Query: 60 GGGAGGDQNPTDRDQRNLPPPPHS-KQESVGAGDKKSNDHQEPPKHSAQPPRSRSYYQ 116
++ R + HS K + + D+ S +E +H R Y++
Sbjct: 306 EAERDKLKDRGHRSRERAKDSGHSEKSKRHSSHDRVSYSSREKDRHRHH*H*FRGYFK 479
Score = 32.3 bits (72), Expect = 0.30
Identities = 23/97 (23%), Positives = 41/97 (41%)
Frame = +3
Query: 3 HRDSDSKLRHSKFDREPSPKRYRRDGKQDRERDRDRDRERERGSERGRDRDRVTTNGGGG 62
+RD D + + R +DR+R RD D+ERER E RD+ + +
Sbjct: 177 NRDRDRDRERDRGRERDRDRDRDRTKSRDRDRGRDSDKERER-EEAERDKLKDRGHRSRE 353
Query: 63 AGGDQNPTDRDQRNLPPPPHSKQESVGAGDKKSNDHQ 99
D +++ +R HS + V ++ + H+
Sbjct: 354 RAKDSGHSEKSKR------HSSHDRVSYSSREKDRHR 446
>TC232471 similar to UP|NLFE_HUMAN (P18615) Negative elongation factor E
(NELF-E) (RD protein), partial (11%)
Length = 480
Score = 48.1 bits (113), Expect = 5e-06
Identities = 26/47 (55%), Positives = 30/47 (63%), Gaps = 3/47 (6%)
Frame = +3
Query: 11 RHSKFDREPSPKRYR---RDGKQDRERDRDRDRERERGSERGRDRDR 54
R+ D +PS R R RD R+RDRDRDR+RER ER RDRDR
Sbjct: 261 RNHSSDPKPSSDRDRDRERDRDHHRDRDRDRDRDRERERERARDRDR 401
Score = 35.8 bits (81), Expect = 0.027
Identities = 20/53 (37%), Positives = 29/53 (53%), Gaps = 1/53 (1%)
Frame = +3
Query: 1 MSHRDSDSKLRHSKFDREPSPKR-YRRDGKQDRERDRDRDRERERGSERGRDR 52
+S S S DR+ R + RD +DR+RDR+R+RER R +R +R
Sbjct: 255 LSRNHSSDPKPSSDRDRDRERDRDHHRDRDRDRDRDRERERERARDRDREAER 413
Score = 30.4 bits (67), Expect = 1.2
Identities = 25/61 (40%), Positives = 34/61 (54%), Gaps = 7/61 (11%)
Frame = +3
Query: 2 SHRDSDSKLRHSKFDREPSPKRYR-RDGKQDRERDRDRD-----RERERGSE-RGRDRDR 54
S RD D + R R+ R R R+ +++R RDRDR+ RERER E R R+R R
Sbjct: 291 SDRDRDRE-RDRDHHRDRDRDRDRDRERERERARDRDREAERRNREREREEESRARERAR 467
Query: 55 V 55
+
Sbjct: 468 L 470
>TC206105 weakly similar to UP|Q7RH28 (Q7RH28) Mature-parasite-infected
erythrocyte surface antigen, partial (5%)
Length = 858
Score = 48.1 bits (113), Expect = 5e-06
Identities = 51/207 (24%), Positives = 91/207 (43%), Gaps = 17/207 (8%)
Frame = +3
Query: 73 DQRNLPPPPHSKQESVGAGDKKSNDHQEPPKHSAQPPRSRSYYQHAERGNTEQVGRSAGR 132
DQR PP +++ A + S Q+P + +Q E + E+ G + R
Sbjct: 258 DQRGWRPPRGAEESP**AQEACSRSAQQP*ANCSQARTGEE-----ETSSREEGGS*SDR 422
Query: 133 REAGGKAFAQSKENSERVETSQSREQRDEKSQAKLDDNLHRRD---GSPERKDDPPSNTR 189
RE G + + + + S RE+ + ++ + HRR+ GS R++ SN R
Sbjct: 423 REEGS*SHRREEGSG-----SDGREEGN*SNRREEGS*SHRREEGSGSDGREEGN*SNRR 587
Query: 190 KRPAFREKKIQGDSGDANP--AVSTERVKASHTDHPPER------------NERKEERSG 235
+ + E++ +G D + S R + S +D E ++R++ERSG
Sbjct: 588 EEGSRSERREEGRGSDGREEGS*SDGREEGSGSDSRREEGS*SDGREEGSGSDRRKERSG 767
Query: 236 NPRHLERHEKQIAGDRAPNRSEGRRDG 262
+ R E + +R+ +RSEGR +G
Sbjct: 768 SDRREEGNRSDRRKERSGSRSEGREEG 848
>BG650799
Length = 381
Score = 47.8 bits (112), Expect = 7e-06
Identities = 20/35 (57%), Positives = 30/35 (85%)
Frame = +1
Query: 26 RDGKQDRERDRDRDRERERGSERGRDRDRVTTNGG 60
R+ +++RER+R+R+RERER ER R+R+R+T NGG
Sbjct: 16 RERERERERERERERERERERERERERERLTKNGG 120
Score = 40.4 bits (93), Expect = 0.001
Identities = 18/36 (50%), Positives = 27/36 (75%)
Frame = +2
Query: 26 RDGKQDRERDRDRDRERERGSERGRDRDRVTTNGGG 61
R+ +++RER+R+R+RERER ER R+R+R GG
Sbjct: 14 RERERERERERERERERERERERERERERDLQRMGG 121
Score = 40.0 bits (92), Expect = 0.001
Identities = 17/31 (54%), Positives = 26/31 (83%)
Frame = +3
Query: 26 RDGKQDRERDRDRDRERERGSERGRDRDRVT 56
R+ +++RER+R+R+RERER ER R+R+R T
Sbjct: 12 RERERERERERERERERERERERERERERET 104
Score = 39.3 bits (90), Expect = 0.002
Identities = 16/27 (59%), Positives = 24/27 (88%)
Frame = +2
Query: 28 GKQDRERDRDRDRERERGSERGRDRDR 54
G+++RER+R+R+RERER ER R+R+R
Sbjct: 2 GERERERERERERERERERERERERER 82
Score = 38.9 bits (89), Expect = 0.003
Identities = 16/29 (55%), Positives = 25/29 (86%)
Frame = +3
Query: 26 RDGKQDRERDRDRDRERERGSERGRDRDR 54
R+ +++RER+R+R+RERER ER R+R+R
Sbjct: 6 RERERERERERERERERERERERERERER 92
Score = 38.9 bits (89), Expect = 0.003
Identities = 16/29 (55%), Positives = 25/29 (86%)
Frame = +2
Query: 26 RDGKQDRERDRDRDRERERGSERGRDRDR 54
R+ +++RER+R+R+RERER ER R+R+R
Sbjct: 8 RERERERERERERERERERERERERERER 94
Score = 31.2 bits (69), Expect = 0.67
Identities = 16/35 (45%), Positives = 25/35 (70%), Gaps = 1/35 (2%)
Frame = +3
Query: 16 DREPSPKRYR-RDGKQDRERDRDRDRERERGSERG 49
+RE +R R R+ +++RER+R+R+RERE E G
Sbjct: 15 ERERERERERERERERERERERERERERETYKEWG 119
Score = 28.5 bits (62), Expect = 4.4
Identities = 15/37 (40%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Frame = +2
Query: 11 RHSKFDREPSPKRYR-RDGKQDRERDRDRDRERERGS 46
R + +RE +R R R+ +++RER+R+RD +R GS
Sbjct: 14 RERERERERERERERERERERERERERERDLQRMGGS 124
>TC212455 weakly similar to UP|Q7QIA8 (Q7QIA8) AgCP3984 (Fragment), partial
(11%)
Length = 944
Score = 47.4 bits (111), Expect = 9e-06
Identities = 51/192 (26%), Positives = 78/192 (40%), Gaps = 27/192 (14%)
Frame = +1
Query: 16 DREPSPKRYRRDGKQDRERDR----------DRDR------ERERGSERGRDRDRVTTNG 59
+RE S +RYRRD ++DR R+R +RDR ER+R E+ RDR R T G
Sbjct: 364 ERERSRERYRRDAEKDRSREREEDGDRRQEKERDRSWDTVFERDRRREKERDRSRDRTIG 543
Query: 60 GGGAGGDQNPTDRDQRNLPPPPHSKQESVGAGDKKSNDHQEPPKHSAQPPRSRSYYQ--- 116
G +N D R + ++ A K + E + R S ++
Sbjct: 544 GKRDRDPENERDDKNRERRDDRYGHKDRDTANGKDRHLRHEDGNDNGDRYRKHSRHEENE 723
Query: 117 -HAER----GNTEQVGRSAGRREAGGKAFAQSKE---NSERVETSQSREQRDEKSQAKLD 168
H ER N +V S G ++ S E + +T Q EQ +E +
Sbjct: 724 YHWERKRNSDNPVKVYNSMGSTAEVDESKLTSSEVEPDDLEEDTLQLPEQEEEDLNRIKE 903
Query: 169 DNLHRRDGSPER 180
++ RR+ E+
Sbjct: 904 ESRRRREAIMEK 939
Score = 41.2 bits (95), Expect = 7e-04
Identities = 42/184 (22%), Positives = 74/184 (39%), Gaps = 1/184 (0%)
Frame = +1
Query: 16 DREPSPKRYRRDGKQDRERDRDRDRERERGSERGRDRDRVTTNGGGGAGGDQNPTDRDQR 75
DR RY +DR+R RDRD +R+ E+ ++ T+ G + +R++
Sbjct: 208 DRREYSTRYHNREARDRDRSRDRDVDRDLHREKKQEE---TSRGKEIEWEHKRGKERERS 378
Query: 76 NLPPPPHSKQESVGAGDKKSNDHQEPPKHSAQPPRSRSYYQHAERGNTEQVGRSAGR-RE 134
++ A +S + +E + R RS+ ER + R R R
Sbjct: 379 R-------ERYRRDAEKDRSREREEDGDRRQEKERDRSWDTVFERDRRREKERDRSRDRT 537
Query: 135 AGGKAFAQSKENSERVETSQSREQRDEKSQAKLDDNLHRRDGSPERKDDPPSNTRKRPAF 194
GGK + E ++RE+RD++ K D + +D +D + R R
Sbjct: 538 IGGK----RDRDPENERDDKNRERRDDRYGHKDRDTANGKDRHLRHEDGNDNGDRYRKHS 705
Query: 195 REKK 198
R ++
Sbjct: 706 RHEE 717
>TC214362 weakly similar to UP|Q7K0Y2 (Q7K0Y2) LD23217p, partial (4%)
Length = 685
Score = 46.6 bits (109), Expect = 2e-05
Identities = 40/141 (28%), Positives = 68/141 (47%)
Frame = +2
Query: 33 ERDRDRDRERERGSERGRDRDRVTTNGGGGAGGDQNPTDRDQRNLPPPPHSKQESVGAGD 92
ERDRDR+R R+R +R +DRDR+ + +++ D D+R+ ++++ES
Sbjct: 8 ERDRDRERYRDRDLDRDQDRDRIRRDKERERERERS-FDYDKRS----KYTERES----- 157
Query: 93 KKSNDHQEPPKHSAQPPRSRSYYQHAERGNTEQVGRSAGRREAGGKAFAQSKENSERVET 152
S D+ KH + RSRS + + G + RS+ +RE +SK S
Sbjct: 158 --SRDYDNGSKHYRR-SRSRSRSRSLQAGTAQYESRSSPQRE-------ESKRTSASSNL 307
Query: 153 SQSREQRDEKSQAKLDDNLHR 173
+Q ++ + K D N+ R
Sbjct: 308 AQLKDMYGDLGDNKGDANMER 370
Score = 33.1 bits (74), Expect = 0.18
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Frame = +2
Query: 4 RDSD-SKLRHSKFDREPSPKRYRRDGKQDRERDRDRDRE-RERGSERGRDRD 53
RD D + R DR+ R RRD +++RER+R D + R + +ER RD
Sbjct: 11 RDRDRERYRDRDLDRDQDRDRIRRDKERERERERSFDYDKRSKYTERESSRD 166
>CD394138
Length = 611
Score = 46.6 bits (109), Expect = 2e-05
Identities = 22/47 (46%), Positives = 36/47 (75%), Gaps = 1/47 (2%)
Frame = +2
Query: 9 KLRHSKFDREPSPKRYR-RDGKQDRERDRDRDRERERGSERGRDRDR 54
++RH + +RE +R R R+ +++RER+R+R+RERER ER R+R+R
Sbjct: 467 RIRHEERERERERERERERERERERERERERERERERERERERERER 607
Score = 40.8 bits (94), Expect = 9e-04
Identities = 20/40 (50%), Positives = 31/40 (77%), Gaps = 1/40 (2%)
Frame = +3
Query: 16 DREPSPKRYR-RDGKQDRERDRDRDRERERGSERGRDRDR 54
+RE +R R R+ +++RER+R+R+RERER ER R+R+R
Sbjct: 492 ERERERERERERERERERERERERERERERERERERERER 611
Score = 37.4 bits (85), Expect = 0.009
Identities = 18/45 (40%), Positives = 29/45 (64%)
Frame = +2
Query: 10 LRHSKFDREPSPKRYRRDGKQDRERDRDRDRERERGSERGRDRDR 54
L H + S + + +++RER+R+R+RERER ER R+R+R
Sbjct: 431 LGHPRGQECASCRIRHEERERERERERERERERERERERERERER 565
>BQ610931 homologue to PIR|S33620|S3362 ADR12-2 protein - soybean, partial
(92%)
Length = 446
Score = 46.6 bits (109), Expect = 2e-05
Identities = 25/58 (43%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Frame = +2
Query: 11 RHSKFDREPSPKRYR-RDGKQDRERDRDRDRERERGSERGRDRDRVTTNGGGGAGGDQ 67
R + +RE +R R R+ +++RER+R+R+RERER ER R+R+R G G DQ
Sbjct: 32 RERERERERERERERERERERERERERERERERERERERERERERERETSCRGKGSDQ 205
Score = 41.6 bits (96), Expect = 5e-04
Identities = 21/45 (46%), Positives = 33/45 (72%), Gaps = 1/45 (2%)
Frame = +3
Query: 11 RHSKFDREPSPKRYR-RDGKQDRERDRDRDRERERGSERGRDRDR 54
R + +RE +R R R+ +++RER+R+R+RERER ER R+R+R
Sbjct: 6 RERERERERERERERERERERERERERERERERERERERERERER 140
Score = 41.6 bits (96), Expect = 5e-04
Identities = 21/45 (46%), Positives = 33/45 (72%), Gaps = 1/45 (2%)
Frame = +3
Query: 11 RHSKFDREPSPKRYR-RDGKQDRERDRDRDRERERGSERGRDRDR 54
R + +RE +R R R+ +++RER+R+R+RERER ER R+R+R
Sbjct: 18 RERERERERERERERERERERERERERERERERERERERERERER 152
Score = 40.8 bits (94), Expect = 9e-04
Identities = 20/40 (50%), Positives = 31/40 (77%), Gaps = 1/40 (2%)
Frame = +3
Query: 16 DREPSPKRYR-RDGKQDRERDRDRDRERERGSERGRDRDR 54
+RE +R R R+ +++RER+R+R+RERER ER R+R+R
Sbjct: 3 ERERERERERERERERERERERERERERERERERERERER 122
>TC219166 similar to GB|AAA36308.1|386949|HUMMHRD5 MHC HLA-RD protein {Homo
sapiens;} , partial (12%)
Length = 774
Score = 45.8 bits (107), Expect = 3e-05
Identities = 31/116 (26%), Positives = 56/116 (47%), Gaps = 5/116 (4%)
Frame = +3
Query: 7 DSKLRHSKFDREPSPKRYRRDGKQDRERDRDRDRERERGSERGRDRDRVTTNGGGGAGGD 66
D + SK DR+ R D +DRER RDR+R+R+R +R + RDR + G + +
Sbjct: 192 DEPILKSKADRKIEAIERRADRDRDRERYRDRERDRDRDRDRTKSRDR---DRGRDSDKE 362
Query: 67 QNPTDRDQRNLPPPPH-SKQESVGAG----DKKSNDHQEPPKHSAQPPRSRSYYQH 117
+ + ++ L H S++ + +G K+ + H S+ R + ++H
Sbjct: 363 REREEAERGKLKDRDHRSRERAKDSGHSEKSKRHSSHDRDSHGSSYSSREKDRHRH 530
Score = 31.2 bits (69), Expect = 0.67
Identities = 31/119 (26%), Positives = 47/119 (39%), Gaps = 6/119 (5%)
Frame = +3
Query: 5 DSDSKLRHSKFDREPSPKRYRRDGKQDRERDRDRDRERE----RGSERGRDRDRVTTNGG 60
D +SK ++ + P + ++ +R DR+R+ R ER RDRDR T
Sbjct: 150 DDESKGMITEGEARDEPILKSKADRKIEAIERRADRDRDRERYRDRERDRDRDRDRTKS- 326
Query: 61 GGAGGDQNPTDRDQRNLPPPPHSKQESVGAGDKKSNDH--QEPPKHSAQPPRSRSYYQH 117
DRD R ++E G K DH +E K S +S+ + H
Sbjct: 327 ---------RDRD-RGRDSDKEREREEAERGKLKDRDHRSRERAKDSGHSEKSKRHSSH 473
>AW132790
Length = 402
Score = 45.8 bits (107), Expect = 3e-05
Identities = 20/29 (68%), Positives = 24/29 (81%)
Frame = +1
Query: 26 RDGKQDRERDRDRDRERERGSERGRDRDR 54
RD ++DR+R RDRDR R+R ERGRDRDR
Sbjct: 169 RDRERDRDRGRDRDRTRDRDRERGRDRDR 255
Score = 44.7 bits (104), Expect = 6e-05
Identities = 19/39 (48%), Positives = 28/39 (71%)
Frame = +1
Query: 21 PKRYRRDGKQDRERDRDRDRERERGSERGRDRDRVTTNG 59
P+ + RD ++R+RDRDR+R+R+RG +R R RDR G
Sbjct: 124 PQIHHRDRDRNRDRDRDRERDRDRGRDRDRTRDRDRERG 240
Score = 44.3 bits (103), Expect = 8e-05
Identities = 26/53 (49%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Frame = +1
Query: 3 HRDSDSKLRHSKFDREPSPKRYR-RDGKQDRERDRDRDRERERGSERGRDRDR 54
HRD D R DRE R R RD +DR+R+R RDR+R+R +R R+RDR
Sbjct: 136 HRDRDRN-RDRDRDRERDRDRGRDRDRTRDRDRERGRDRDRDREYDRHRERDR 291
Score = 37.0 bits (84), Expect = 0.012
Identities = 18/42 (42%), Positives = 24/42 (56%)
Frame = +1
Query: 32 RERDRDRDRERERGSERGRDRDRVTTNGGGGAGGDQNPTDRD 73
R+RDR+RDR+R+R +R R RDR T G DR+
Sbjct: 139 RDRDRNRDRDRDRERDRDRGRDRDRTRDRDRERGRDRDRDRE 264
Score = 32.3 bits (72), Expect = 0.30
Identities = 20/45 (44%), Positives = 27/45 (59%), Gaps = 6/45 (13%)
Frame = +1
Query: 16 DREPSPKRYRRDGK-QDRERDRDRDRERERGSE-----RGRDRDR 54
DR+ + R R G+ +DR+R+ DR RER+R E RGR DR
Sbjct: 202 DRDRTRDRDRERGRDRDRDREYDRHRERDRDYEVGDPDRGRSLDR 336
>TC224723 hydroxyproline-rich glycoprotein
Length = 2345
Score = 45.4 bits (106), Expect = 3e-05
Identities = 27/76 (35%), Positives = 41/76 (53%)
Frame = -3
Query: 6 SDSKLRHSKFDREPSPKRYRRDGKQDRERDRDRDRERERGSERGRDRDRVTTNGGGGAGG 65
S ++RH + +RE +R R +RER+R+R+RERER ER R+R+R
Sbjct: 717 SSCRIRHEERERERERERER-----ERERERERERERERERERERERER----------- 586
Query: 66 DQNPTDRDQRNLPPPP 81
+++P PPPP
Sbjct: 585 ERSPPPPYYYKSPPPP 538
Score = 40.4 bits (93), Expect = 0.001
Identities = 18/38 (47%), Positives = 28/38 (73%)
Frame = -2
Query: 17 REPSPKRYRRDGKQDRERDRDRDRERERGSERGRDRDR 54
+E P R + +++RER+R+R+RERER ER R+R+R
Sbjct: 721 KELVPNSARGERERERERERERERERERERERERERER 608
>TC203738 homologue to UP|RS5_CICAR (O65731) 40S ribosomal protein S5
(Fragment), partial (88%)
Length = 1846
Score = 44.7 bits (104), Expect = 6e-05
Identities = 37/127 (29%), Positives = 61/127 (47%), Gaps = 16/127 (12%)
Frame = +1
Query: 2 SHRDSDSKLRHSKFDREPSPKRYR-RDGKQDRERDRDRDRERERGSE------------- 47
+H+ S ++RH + +RE +R R R+ +++RER+R+R+RERER E
Sbjct: 769 NHKTSWCRIRHER-ERERERERERERERERERERERERERERERERELQDCILVRKIS*Q 945
Query: 48 --RGRDRDRVTTNGGGGAGGDQNPTDRDQRNLPPPPHSKQESVGAGDKKSNDHQEPPKHS 105
R R + + GA Q T + +++ESV AG + +H P + S
Sbjct: 946 NGRNRSKPKEGWLPHMGAVNSQGSTSYHSKCTFIQISNERESVEAGIQNCWNHWRPMERS 1125
Query: 106 AQPPRSR 112
A P+ R
Sbjct: 1126AWRPQRR 1146
Score = 38.1 bits (87), Expect = 0.006
Identities = 17/56 (30%), Positives = 33/56 (58%)
Frame = +2
Query: 5 DSDSKLRHSKFDREPSPKRYRRDGKQDRERDRDRDRERERGSERGRDRDRVTTNGG 60
+ ++L ++F + R+ +++RER+R+R+RERER ER R+ ++ G
Sbjct: 764 EKTTRLAGAEFGTRERERERERERERERERERERERERERERERERESFKIVFLSG 931
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.307 0.128 0.369
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,498,733
Number of Sequences: 63676
Number of extensions: 219985
Number of successful extensions: 10413
Number of sequences better than 10.0: 658
Number of HSP's better than 10.0 without gapping: 3643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6375
length of query: 330
length of database: 12,639,632
effective HSP length: 98
effective length of query: 232
effective length of database: 6,399,384
effective search space: 1484657088
effective search space used: 1484657088
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 59 (27.3 bits)
Lotus: description of TM0218.18