Lotus
BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0218.18
         (330 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC231987                                                              223  7e-59
TC231225 similar to UP|Q9LJN1 (Q9LJN1) Gb|AAB92077.1, partial (10%)   168  3e-42
BU551128                                                              129  1e-30
AW306516                                                              100  2e-21
TC219663 similar to GB|AAA36308.1|386949|HUMMHRD5 MHC HLA-RD pro...    52  3e-07
TC214347 homologue to UP|Q43821 (Q43821) Ubiquitin conjugating e...    51  6e-07
TC217193 similar to UP|Q7XJN2 (Q7XJN2) At2g40650 protein, partia...    50  2e-06
BE058585                                                               49  3e-06
TC219167 similar to GB|AAA36308.1|386949|HUMMHRD5 MHC HLA-RD pro...    49  4e-06
TC232471 similar to UP|NLFE_HUMAN (P18615) Negative elongation f...    48  5e-06
TC206105 weakly similar to UP|Q7RH28 (Q7RH28) Mature-parasite-in...    48  5e-06
BG650799                                                               48  7e-06
TC212455 weakly similar to UP|Q7QIA8 (Q7QIA8) AgCP3984 (Fragment...    47  9e-06
TC214362 weakly similar to UP|Q7K0Y2 (Q7K0Y2) LD23217p, partial ...    47  2e-05
CD394138                                                               47  2e-05
BQ610931 homologue to PIR|S33620|S3362 ADR12-2 protein - soybean...    47  2e-05
TC219166 similar to GB|AAA36308.1|386949|HUMMHRD5 MHC HLA-RD pro...    46  3e-05
AW132790                                                               46  3e-05
TC224723 hydroxyproline-rich glycoprotein                              45  3e-05
TC203738 homologue to UP|RS5_CICAR (O65731) 40S ribosomal protei...    45  6e-05

>TC231987 
          Length = 603

 Score =  223 bits (569), Expect = 7e-59
 Identities = 110/142 (77%), Positives = 117/142 (81%)
 Frame = +1

Query: 189 RKRPAFREKKIQGDSGDANPAVSTERVKASHTDHPPERNERKEERSGNPRHLERHEKQIA 248
           R R AFREKKI  DS DANPA   E VK SHTDHPPERNERK+ERS NP HL+R EK  A
Sbjct: 4   RGRRAFREKKIPADSADANPASIVE-VKPSHTDHPPERNERKDERSSNPHHLDRPEKPNA 180

Query: 249 GDRAPNRSEGRRDGFSSRARYGGSGGNNNDRGRDKFNARQGYHPIKTRTEKWKHDLFQEA 308
             RAPN+ E RRDGFSSRARYGGSGGNNN RGRDKFN +QGY PIKTR EKWKHDL+QE 
Sbjct: 181 EGRAPNKIEARRDGFSSRARYGGSGGNNNYRGRDKFNGKQGYRPIKTRMEKWKHDLYQEV 360

Query: 309 DNDPVPKNEDDQIAKLEALLAS 330
           + DP+PKNEDDQIAKLEALLAS
Sbjct: 361 NKDPIPKNEDDQIAKLEALLAS 426


>TC231225 similar to UP|Q9LJN1 (Q9LJN1) Gb|AAB92077.1, partial (10%)
          Length = 467

 Score =  168 bits (426), Expect = 3e-42
 Identities = 96/162 (59%), Positives = 109/162 (67%), Gaps = 3/162 (1%)
 Frame = +3

Query: 1   MSHRDSDSKLRHSKFDREPSPKRYRRDGKQDRERDRDRDRERERGSERGRDRDRVTTNGG 60
           MSHRDSDSK RHSKFDREPSPKRYRRDGKQ+RERDR+R                VT++GG
Sbjct: 84  MSHRDSDSKRRHSKFDREPSPKRYRRDGKQERERDRNR----------------VTSDGG 215

Query: 61  GGAGGDQNPTDRDQRNLPPPPHSKQESVGAGDKKSND---HQEPPKHSAQPPRSRSYYQH 117
                       DQRN  PP H ++E   A  KKSN    H++ PKHS+QPPRSRSY+QH
Sbjct: 216 ------------DQRN--PPHHFRREPFDAAPKKSNSNDHHEQQPKHSSQPPRSRSYHQH 353

Query: 118 AERGNTEQVGRSAGRREAGGKAFAQSKENSERVETSQSREQR 159
            ERG+T QVGRS G+REAGGK F QSKEN+E    SQS EQR
Sbjct: 354 DERGSTGQVGRSNGQREAGGKVFTQSKENNE----SQSTEQR 467


>BU551128 
          Length = 657

 Score =  129 bits (325), Expect = 1e-30
 Identities = 81/163 (49%), Positives = 98/163 (59%)
 Frame = -1

Query: 168 DDNLHRRDGSPERKDDPPSNTRKRPAFREKKIQGDSGDANPAVSTERVKASHTDHPPERN 227
           D+   RRDG  ER       +RKR A  EKKI  DSGDAN A     VK+S         
Sbjct: 657 DNTFQRRDGFTER-------SRKRXAXXEKKIVVDSGDANVAA----VKSS--------- 538

Query: 228 ERKEERSGNPRHLERHEKQIAGDRAPNRSEGRRDGFSSRARYGGSGGNNNDRGRDKFNAR 287
            +KEER+ NP+HL+R  K  A D+   R  GRR            GGN++ +GRDKFN R
Sbjct: 537 -QKEERNSNPQHLDRXXKHFADDKGEAR-RGRR-----------YGGNDSYKGRDKFNGR 397

Query: 288 QGYHPIKTRTEKWKHDLFQEADNDPVPKNEDDQIAKLEALLAS 330
           +GY     R+EKWKHDL+QE + DP+P+NEDDQIAKLEALLAS
Sbjct: 396 RGY-----RSEKWKHDLYQEVNKDPIPQNEDDQIAKLEALLAS 283


>AW306516 
          Length = 282

 Score = 99.8 bits (247), Expect = 2e-21
 Identities = 45/57 (78%), Positives = 49/57 (85%)
 Frame = +1

Query: 274 GNNNDRGRDKFNARQGYHPIKTRTEKWKHDLFQEADNDPVPKNEDDQIAKLEALLAS 330
           GN+N RGRDK N RQGY PIK R EKWKHDL+QE + DP+PKNEDDQIAKLEALLAS
Sbjct: 7   GNSNYRGRDKINGRQGYRPIKMRMEKWKHDLYQEVNKDPIPKNEDDQIAKLEALLAS 177


>TC219663 similar to GB|AAA36308.1|386949|HUMMHRD5 MHC HLA-RD protein {Homo
           sapiens;} , partial (14%)
          Length = 1176

 Score = 52.4 bits (124), Expect = 3e-07
 Identities = 48/172 (27%), Positives = 70/172 (39%), Gaps = 8/172 (4%)
 Frame = +3

Query: 3   HRDSDSKLRHSKFDREPSPKRYR-RDGKQDRERDRDRDRERERGSERGRDRDRVTTNGGG 61
           HRD D   R    DRE    R R RD  +DR+R+R RDR+R+R  +R R+RDR    G  
Sbjct: 384 HRDRDRN-RDRDRDRERDRDRGRDRDRTRDRDRERGRDRDRDREYDRHRERDRDYEVGDP 560

Query: 62  GAGGDQNPTDRDQRNLPPPPHSKQESVGAGDKKSNDHQEPPKHSAQPPRSRSYYQHAERG 121
             G  ++      R          +     D+  ++  E  +  A P      Y H   G
Sbjct: 561 DRGRSRDRESDYDRVESKHGERNHDYEPEDDRGRHNQYEHGRRHADPDHDPERYDHYNHG 740

Query: 122 NTEQVGRSAGRREAG-------GKAFAQSKENSERVETSQSREQRDEKSQAK 166
           +      +  R   G       G+A ++S E  ER        QR E+S ++
Sbjct: 741 DDHGDHYNQYRDHDGMEDDYHAGRATSESHE-KERSHDVDREYQRSERSHSR 893



 Score = 51.6 bits (122), Expect = 5e-07
 Identities = 39/123 (31%), Positives = 55/123 (44%), Gaps = 3/123 (2%)
 Frame = +3

Query: 16  DREPSPKRYRRDGKQDRERDRDRDRERERGSERGRDRDRVTTNGGGGAGGDQNPTDRDQR 75
           DR+    R+ RD  ++R+RDRDR+R+R+RG +R R RDR    G           DRD+ 
Sbjct: 357 DRDHREDRHHRDRDRNRDRDRDRERDRDRGRDRDRTRDRDRERG--------RDRDRDRE 512

Query: 76  NLPPPPHSKQESVGAGDK-KSNDHQE--PPKHSAQPPRSRSYYQHAERGNTEQVGRSAGR 132
                   +   VG  D+ +S D +       S    R+  Y    +RG   Q     GR
Sbjct: 513 YDRHRERDRDYEVGDPDRGRSRDRESDYDRVESKHGERNHDYEPEDDRGRHNQY--EHGR 686

Query: 133 REA 135
           R A
Sbjct: 687 RHA 695



 Score = 50.4 bits (119), Expect = 1e-06
 Identities = 53/220 (24%), Positives = 82/220 (37%), Gaps = 8/220 (3%)
 Frame = +3

Query: 23  RYRRDGKQDRERDRDRDRERER----GSERGRDRDRVTTNGGGGAGGDQNPTDRDQRNLP 78
           R  RD +  RER RD+DRERER      ER RDRD            D++  DRD+    
Sbjct: 261 RSSRDREISRERGRDKDRERERSREHSHERVRDRDH---------REDRHHRDRDRNRDR 413

Query: 79  PPPHSKQESVGAGDKKSNDHQEPPKHSAQPPRSRSYYQHAERGNTEQVGRSAGRREAGGK 138
                +    G    ++ D     +      R R Y +H ER    +VG    R  +  +
Sbjct: 414 DRDRERDRDRGRDRDRTRDRDR--ERGRDRDRDREYDRHRERDRDYEVG-DPDRGRSRDR 584

Query: 139 AFAQSKENSERVETSQSREQRDEKSQAKLDDNLHRR---DGSPERKDDPPSNTRKRPAFR 195
                +  S+  E +   E  D++ +    ++  R    D  PER D           + 
Sbjct: 585 ESDYDRVESKHGERNHDYEPEDDRGRHNQYEHGRRHADPDHDPERYDHYNHGDDHGDHYN 764

Query: 196 E-KKIQGDSGDANPAVSTERVKASHTDHPPERNERKEERS 234
           + +   G   D +   +T         H  +R  ++ ERS
Sbjct: 765 QYRDHDGMEDDYHAGRATSESHEKERSHDVDREYQRSERS 884


>TC214347 homologue to UP|Q43821 (Q43821) Ubiquitin conjugating enzyme  ,
           partial (36%)
          Length = 899

 Score = 51.2 bits (121), Expect = 6e-07
 Identities = 41/160 (25%), Positives = 71/160 (43%), Gaps = 3/160 (1%)
 Frame = +2

Query: 17  REPSPKRYR---RDGKQDRERDRDRDRERERGSERGRDRDRVTTNGGGGAGGDQNPTDRD 73
           RE    RYR   R+ + +R+RDRDR+R R+  SER +DRDR+  N         N  +R+
Sbjct: 203 RERDRDRYRDRDRNREWERDRDRDRERYRDHDSERDQDRDRIRRN---------NERERE 355

Query: 74  QRNLPPPPHSKQESVGAGDKKSNDHQEPPKHSAQPPRSRSYYQHAERGNTEQVGRSAGRR 133
           +  +       + +     +  ++     + S    RSRS  +  + G      RS+ +R
Sbjct: 356 RERIYDYDKRSKYTERESSRDYDNGSRHYRRSRSRSRSRSRSRSLQAGTGWYESRSSPQR 535

Query: 134 EAGGKAFAQSKENSERVETSQSREQRDEKSQAKLDDNLHR 173
           E       +SK  S     ++ ++   +   +K D N+ R
Sbjct: 536 E-------ESKRTSASSNLAKLKDMYGDLGDSKGDANMER 634


>TC217193 similar to UP|Q7XJN2 (Q7XJN2) At2g40650 protein, partial (88%)
          Length = 1691

 Score = 49.7 bits (117), Expect = 2e-06
 Identities = 41/173 (23%), Positives = 68/173 (38%)
 Frame = +3

Query: 3   HRDSDSKLRHSKFDREPSPKRYRRDGKQDRERDRDRDRERERGSERGRDRDRVTTNGGGG 62
           H    S  R    DR     R+R D   DR+ DRD DRER RG +R RDR+R        
Sbjct: 846 HYRGRSPTRERDRDRRHDSHRHR-DRDYDRDYDRDYDRERGRGRDRDRDRER-------- 998

Query: 63  AGGDQNPTDRDQRNLPPPPHSKQESVGAGDKKSNDHQEPPKHSAQPPRSRSYYQHAERGN 122
                   DRD+  L       +E    G  +    +E  +      R RS+ +   R  
Sbjct: 999 ------DRDRDRYRL-------REEKDYGRDREGRERERREKDRDRGRRRSHSRSRSRSR 1139

Query: 123 TEQVGRSAGRREAGGKAFAQSKENSERVETSQSREQRDEKSQAKLDDNLHRRD 175
             +       R+   ++    + + + +E  + ++++ ++ + K DD     D
Sbjct: 1140DRREHDGGDYRKRHARSSVSPRRHGDGLEDGEPKKKKKKEKKEKKDDGTDHPD 1298


>BE058585 
          Length = 320

 Score = 48.9 bits (115), Expect = 3e-06
 Identities = 24/52 (46%), Positives = 38/52 (72%), Gaps = 1/52 (1%)
 Frame = +1

Query: 4   RDSDSKLRHSKFDREPSPKRYR-RDGKQDRERDRDRDRERERGSERGRDRDR 54
           R S  ++RH + +RE   +R R R+ +++RER+R+R+RERER  ER R+R+R
Sbjct: 154 RASSCRIRHQERERERERERERERERERERERERERERERERERERERERER 309



 Score = 42.4 bits (98), Expect = 3e-04
 Identities = 18/46 (39%), Positives = 32/46 (69%)
 Frame = +3

Query: 9   KLRHSKFDREPSPKRYRRDGKQDRERDRDRDRERERGSERGRDRDR 54
           +++ S+     +P    R+ +++RER+R+R+RERER  ER R+R+R
Sbjct: 144 RIKESELVPNSAPGERERERERERERERERERERERERERERERER 281



 Score = 41.6 bits (96), Expect = 5e-04
 Identities = 21/45 (46%), Positives = 33/45 (72%), Gaps = 1/45 (2%)
 Frame = +2

Query: 11  RHSKFDREPSPKRYR-RDGKQDRERDRDRDRERERGSERGRDRDR 54
           R  + +RE   +R R R+ +++RER+R+R+RERER  ER R+R+R
Sbjct: 185 RERERERERERERERERERERERERERERERERERERERERERER 319



 Score = 40.4 bits (93), Expect = 0.001
 Identities = 20/53 (37%), Positives = 34/53 (63%)
 Frame = +3

Query: 2   SHRDSDSKLRHSKFDREPSPKRYRRDGKQDRERDRDRDRERERGSERGRDRDR 54
           S+R  +   R  + +  P+     R+ +++RER+R+R+RERER  ER R+R+R
Sbjct: 117 SYRYEEYVQRIKESELVPNSAPGERERERERERERERERERERERERERERER 275


>TC219167 similar to GB|AAA36308.1|386949|HUMMHRD5 MHC HLA-RD protein {Homo
           sapiens;} , partial (11%)
          Length = 600

 Score = 48.5 bits (114), Expect = 4e-06
 Identities = 28/87 (32%), Positives = 44/87 (50%)
 Frame = +3

Query: 28  GKQDRERDRDRDRERERGSERGRDRDRVTTNGGGGAGGDQNPTDRDQRNLPPPPHSKQES 87
           G+  R RDRDRDRER+RG ER RDRDR  T       G  +  +R++        ++++ 
Sbjct: 162 GETRRNRDRDRDRERDRGRERDRDRDRDRTKSRDRDRGRDSDKERERE------EAERDK 323

Query: 88  VGAGDKKSNDHQEPPKHSAQPPRSRSY 114
           +     +S +  +   HS +  R  S+
Sbjct: 324 LKDRGHRSRERAKDSGHSEKSKRHSSH 404



 Score = 41.2 bits (95), Expect = 7e-04
 Identities = 32/118 (27%), Positives = 50/118 (42%), Gaps = 8/118 (6%)
 Frame = +3

Query: 7   DSKLRHSKFDREPSPKRYR-------RDGKQDRERDRDRDRERERGSERGRDRDRVTTNG 59
           D  +  SK D     +R R       RD  ++R+RDRDRDR + R  +RGRD D+     
Sbjct: 126 DEPILKSKADHIGETRRNRDRDRDRERDRGRERDRDRDRDRTKSRDRDRGRDSDKERERE 305

Query: 60  GGGAGGDQNPTDRDQRNLPPPPHS-KQESVGAGDKKSNDHQEPPKHSAQPPRSRSYYQ 116
                  ++   R +       HS K +   + D+ S   +E  +H       R Y++
Sbjct: 306 EAERDKLKDRGHRSRERAKDSGHSEKSKRHSSHDRVSYSSREKDRHRHH*H*FRGYFK 479



 Score = 32.3 bits (72), Expect = 0.30
 Identities = 23/97 (23%), Positives = 41/97 (41%)
 Frame = +3

Query: 3   HRDSDSKLRHSKFDREPSPKRYRRDGKQDRERDRDRDRERERGSERGRDRDRVTTNGGGG 62
           +RD D      +       +   R   +DR+R RD D+ERER  E  RD+ +   +    
Sbjct: 177 NRDRDRDRERDRGRERDRDRDRDRTKSRDRDRGRDSDKERER-EEAERDKLKDRGHRSRE 353

Query: 63  AGGDQNPTDRDQRNLPPPPHSKQESVGAGDKKSNDHQ 99
              D   +++ +R      HS  + V    ++ + H+
Sbjct: 354 RAKDSGHSEKSKR------HSSHDRVSYSSREKDRHR 446


>TC232471 similar to UP|NLFE_HUMAN (P18615) Negative elongation factor E
           (NELF-E) (RD protein), partial (11%)
          Length = 480

 Score = 48.1 bits (113), Expect = 5e-06
 Identities = 26/47 (55%), Positives = 30/47 (63%), Gaps = 3/47 (6%)
 Frame = +3

Query: 11  RHSKFDREPSPKRYR---RDGKQDRERDRDRDRERERGSERGRDRDR 54
           R+   D +PS  R R   RD    R+RDRDRDR+RER  ER RDRDR
Sbjct: 261 RNHSSDPKPSSDRDRDRERDRDHHRDRDRDRDRDRERERERARDRDR 401



 Score = 35.8 bits (81), Expect = 0.027
 Identities = 20/53 (37%), Positives = 29/53 (53%), Gaps = 1/53 (1%)
 Frame = +3

Query: 1   MSHRDSDSKLRHSKFDREPSPKR-YRRDGKQDRERDRDRDRERERGSERGRDR 52
           +S   S      S  DR+    R + RD  +DR+RDR+R+RER R  +R  +R
Sbjct: 255 LSRNHSSDPKPSSDRDRDRERDRDHHRDRDRDRDRDRERERERARDRDREAER 413



 Score = 30.4 bits (67), Expect = 1.2
 Identities = 25/61 (40%), Positives = 34/61 (54%), Gaps = 7/61 (11%)
 Frame = +3

Query: 2   SHRDSDSKLRHSKFDREPSPKRYR-RDGKQDRERDRDRD-----RERERGSE-RGRDRDR 54
           S RD D + R     R+    R R R+ +++R RDRDR+     RERER  E R R+R R
Sbjct: 291 SDRDRDRE-RDRDHHRDRDRDRDRDRERERERARDRDREAERRNREREREEESRARERAR 467

Query: 55  V 55
           +
Sbjct: 468 L 470


>TC206105 weakly similar to UP|Q7RH28 (Q7RH28) Mature-parasite-infected
           erythrocyte surface antigen, partial (5%)
          Length = 858

 Score = 48.1 bits (113), Expect = 5e-06
 Identities = 51/207 (24%), Positives = 91/207 (43%), Gaps = 17/207 (8%)
 Frame = +3

Query: 73  DQRNLPPPPHSKQESVGAGDKKSNDHQEPPKHSAQPPRSRSYYQHAERGNTEQVGRSAGR 132
           DQR   PP  +++    A +  S   Q+P  + +Q           E  + E+ G  + R
Sbjct: 258 DQRGWRPPRGAEESP**AQEACSRSAQQP*ANCSQARTGEE-----ETSSREEGGS*SDR 422

Query: 133 REAGGKAFAQSKENSERVETSQSREQRDEKSQAKLDDNLHRRD---GSPERKDDPPSNTR 189
           RE G  +  + + +      S  RE+ +  ++ +     HRR+   GS  R++   SN R
Sbjct: 423 REEGS*SHRREEGSG-----SDGREEGN*SNRREEGS*SHRREEGSGSDGREEGN*SNRR 587

Query: 190 KRPAFREKKIQGDSGDANP--AVSTERVKASHTDHPPER------------NERKEERSG 235
           +  +  E++ +G   D     + S  R + S +D   E             ++R++ERSG
Sbjct: 588 EEGSRSERREEGRGSDGREEGS*SDGREEGSGSDSRREEGS*SDGREEGSGSDRRKERSG 767

Query: 236 NPRHLERHEKQIAGDRAPNRSEGRRDG 262
           + R  E +      +R+ +RSEGR +G
Sbjct: 768 SDRREEGNRSDRRKERSGSRSEGREEG 848


>BG650799 
          Length = 381

 Score = 47.8 bits (112), Expect = 7e-06
 Identities = 20/35 (57%), Positives = 30/35 (85%)
 Frame = +1

Query: 26 RDGKQDRERDRDRDRERERGSERGRDRDRVTTNGG 60
          R+ +++RER+R+R+RERER  ER R+R+R+T NGG
Sbjct: 16 RERERERERERERERERERERERERERERLTKNGG 120



 Score = 40.4 bits (93), Expect = 0.001
 Identities = 18/36 (50%), Positives = 27/36 (75%)
 Frame = +2

Query: 26 RDGKQDRERDRDRDRERERGSERGRDRDRVTTNGGG 61
          R+ +++RER+R+R+RERER  ER R+R+R     GG
Sbjct: 14 RERERERERERERERERERERERERERERDLQRMGG 121



 Score = 40.0 bits (92), Expect = 0.001
 Identities = 17/31 (54%), Positives = 26/31 (83%)
 Frame = +3

Query: 26 RDGKQDRERDRDRDRERERGSERGRDRDRVT 56
          R+ +++RER+R+R+RERER  ER R+R+R T
Sbjct: 12 RERERERERERERERERERERERERERERET 104



 Score = 39.3 bits (90), Expect = 0.002
 Identities = 16/27 (59%), Positives = 24/27 (88%)
 Frame = +2

Query: 28 GKQDRERDRDRDRERERGSERGRDRDR 54
          G+++RER+R+R+RERER  ER R+R+R
Sbjct: 2  GERERERERERERERERERERERERER 82



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 16/29 (55%), Positives = 25/29 (86%)
 Frame = +3

Query: 26 RDGKQDRERDRDRDRERERGSERGRDRDR 54
          R+ +++RER+R+R+RERER  ER R+R+R
Sbjct: 6  RERERERERERERERERERERERERERER 92



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 16/29 (55%), Positives = 25/29 (86%)
 Frame = +2

Query: 26 RDGKQDRERDRDRDRERERGSERGRDRDR 54
          R+ +++RER+R+R+RERER  ER R+R+R
Sbjct: 8  RERERERERERERERERERERERERERER 94



 Score = 31.2 bits (69), Expect = 0.67
 Identities = 16/35 (45%), Positives = 25/35 (70%), Gaps = 1/35 (2%)
 Frame = +3

Query: 16 DREPSPKRYR-RDGKQDRERDRDRDRERERGSERG 49
          +RE   +R R R+ +++RER+R+R+RERE   E G
Sbjct: 15 ERERERERERERERERERERERERERERETYKEWG 119



 Score = 28.5 bits (62), Expect = 4.4
 Identities = 15/37 (40%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
 Frame = +2

Query: 11 RHSKFDREPSPKRYR-RDGKQDRERDRDRDRERERGS 46
          R  + +RE   +R R R+ +++RER+R+RD +R  GS
Sbjct: 14 RERERERERERERERERERERERERERERDLQRMGGS 124


>TC212455 weakly similar to UP|Q7QIA8 (Q7QIA8) AgCP3984 (Fragment), partial
           (11%)
          Length = 944

 Score = 47.4 bits (111), Expect = 9e-06
 Identities = 51/192 (26%), Positives = 78/192 (40%), Gaps = 27/192 (14%)
 Frame = +1

Query: 16  DREPSPKRYRRDGKQDRERDR----------DRDR------ERERGSERGRDRDRVTTNG 59
           +RE S +RYRRD ++DR R+R          +RDR      ER+R  E+ RDR R  T G
Sbjct: 364 ERERSRERYRRDAEKDRSREREEDGDRRQEKERDRSWDTVFERDRRREKERDRSRDRTIG 543

Query: 60  GGGAGGDQNPTDRDQRNLPPPPHSKQESVGAGDKKSNDHQEPPKHSAQPPRSRSYYQ--- 116
           G      +N  D   R      +  ++   A  K  +   E    +    R  S ++   
Sbjct: 544 GKRDRDPENERDDKNRERRDDRYGHKDRDTANGKDRHLRHEDGNDNGDRYRKHSRHEENE 723

Query: 117 -HAER----GNTEQVGRSAGRREAGGKAFAQSKE---NSERVETSQSREQRDEKSQAKLD 168
            H ER     N  +V  S G      ++   S E   +    +T Q  EQ +E      +
Sbjct: 724 YHWERKRNSDNPVKVYNSMGSTAEVDESKLTSSEVEPDDLEEDTLQLPEQEEEDLNRIKE 903

Query: 169 DNLHRRDGSPER 180
           ++  RR+   E+
Sbjct: 904 ESRRRREAIMEK 939



 Score = 41.2 bits (95), Expect = 7e-04
 Identities = 42/184 (22%), Positives = 74/184 (39%), Gaps = 1/184 (0%)
 Frame = +1

Query: 16  DREPSPKRYRRDGKQDRERDRDRDRERERGSERGRDRDRVTTNGGGGAGGDQNPTDRDQR 75
           DR     RY     +DR+R RDRD +R+   E+ ++    T+ G       +   +R++ 
Sbjct: 208 DRREYSTRYHNREARDRDRSRDRDVDRDLHREKKQEE---TSRGKEIEWEHKRGKERERS 378

Query: 76  NLPPPPHSKQESVGAGDKKSNDHQEPPKHSAQPPRSRSYYQHAERGNTEQVGRSAGR-RE 134
                   ++    A   +S + +E      +  R RS+    ER    +  R   R R 
Sbjct: 379 R-------ERYRRDAEKDRSREREEDGDRRQEKERDRSWDTVFERDRRREKERDRSRDRT 537

Query: 135 AGGKAFAQSKENSERVETSQSREQRDEKSQAKLDDNLHRRDGSPERKDDPPSNTRKRPAF 194
            GGK       + E     ++RE+RD++   K  D  + +D     +D   +  R R   
Sbjct: 538 IGGK----RDRDPENERDDKNRERRDDRYGHKDRDTANGKDRHLRHEDGNDNGDRYRKHS 705

Query: 195 REKK 198
           R ++
Sbjct: 706 RHEE 717


>TC214362 weakly similar to UP|Q7K0Y2 (Q7K0Y2) LD23217p, partial (4%)
          Length = 685

 Score = 46.6 bits (109), Expect = 2e-05
 Identities = 40/141 (28%), Positives = 68/141 (47%)
 Frame = +2

Query: 33  ERDRDRDRERERGSERGRDRDRVTTNGGGGAGGDQNPTDRDQRNLPPPPHSKQESVGAGD 92
           ERDRDR+R R+R  +R +DRDR+  +       +++  D D+R+     ++++ES     
Sbjct: 8   ERDRDRERYRDRDLDRDQDRDRIRRDKERERERERS-FDYDKRS----KYTERES----- 157

Query: 93  KKSNDHQEPPKHSAQPPRSRSYYQHAERGNTEQVGRSAGRREAGGKAFAQSKENSERVET 152
             S D+    KH  +  RSRS  +  + G  +   RS+ +RE       +SK  S     
Sbjct: 158 --SRDYDNGSKHYRR-SRSRSRSRSLQAGTAQYESRSSPQRE-------ESKRTSASSNL 307

Query: 153 SQSREQRDEKSQAKLDDNLHR 173
           +Q ++   +    K D N+ R
Sbjct: 308 AQLKDMYGDLGDNKGDANMER 370



 Score = 33.1 bits (74), Expect = 0.18
 Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
 Frame = +2

Query: 4  RDSD-SKLRHSKFDREPSPKRYRRDGKQDRERDRDRDRE-RERGSERGRDRD 53
          RD D  + R    DR+    R RRD +++RER+R  D + R + +ER   RD
Sbjct: 11 RDRDRERYRDRDLDRDQDRDRIRRDKERERERERSFDYDKRSKYTERESSRD 166


>CD394138 
          Length = 611

 Score = 46.6 bits (109), Expect = 2e-05
 Identities = 22/47 (46%), Positives = 36/47 (75%), Gaps = 1/47 (2%)
 Frame = +2

Query: 9   KLRHSKFDREPSPKRYR-RDGKQDRERDRDRDRERERGSERGRDRDR 54
           ++RH + +RE   +R R R+ +++RER+R+R+RERER  ER R+R+R
Sbjct: 467 RIRHEERERERERERERERERERERERERERERERERERERERERER 607



 Score = 40.8 bits (94), Expect = 9e-04
 Identities = 20/40 (50%), Positives = 31/40 (77%), Gaps = 1/40 (2%)
 Frame = +3

Query: 16  DREPSPKRYR-RDGKQDRERDRDRDRERERGSERGRDRDR 54
           +RE   +R R R+ +++RER+R+R+RERER  ER R+R+R
Sbjct: 492 ERERERERERERERERERERERERERERERERERERERER 611



 Score = 37.4 bits (85), Expect = 0.009
 Identities = 18/45 (40%), Positives = 29/45 (64%)
 Frame = +2

Query: 10  LRHSKFDREPSPKRYRRDGKQDRERDRDRDRERERGSERGRDRDR 54
           L H +     S +    + +++RER+R+R+RERER  ER R+R+R
Sbjct: 431 LGHPRGQECASCRIRHEERERERERERERERERERERERERERER 565


>BQ610931 homologue to PIR|S33620|S3362 ADR12-2 protein - soybean, partial
          (92%)
          Length = 446

 Score = 46.6 bits (109), Expect = 2e-05
 Identities = 25/58 (43%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
 Frame = +2

Query: 11 RHSKFDREPSPKRYR-RDGKQDRERDRDRDRERERGSERGRDRDRVTTNGGGGAGGDQ 67
          R  + +RE   +R R R+ +++RER+R+R+RERER  ER R+R+R       G G DQ
Sbjct: 32 RERERERERERERERERERERERERERERERERERERERERERERERETSCRGKGSDQ 205



 Score = 41.6 bits (96), Expect = 5e-04
 Identities = 21/45 (46%), Positives = 33/45 (72%), Gaps = 1/45 (2%)
 Frame = +3

Query: 11 RHSKFDREPSPKRYR-RDGKQDRERDRDRDRERERGSERGRDRDR 54
          R  + +RE   +R R R+ +++RER+R+R+RERER  ER R+R+R
Sbjct: 6  RERERERERERERERERERERERERERERERERERERERERERER 140



 Score = 41.6 bits (96), Expect = 5e-04
 Identities = 21/45 (46%), Positives = 33/45 (72%), Gaps = 1/45 (2%)
 Frame = +3

Query: 11 RHSKFDREPSPKRYR-RDGKQDRERDRDRDRERERGSERGRDRDR 54
          R  + +RE   +R R R+ +++RER+R+R+RERER  ER R+R+R
Sbjct: 18 RERERERERERERERERERERERERERERERERERERERERERER 152



 Score = 40.8 bits (94), Expect = 9e-04
 Identities = 20/40 (50%), Positives = 31/40 (77%), Gaps = 1/40 (2%)
 Frame = +3

Query: 16 DREPSPKRYR-RDGKQDRERDRDRDRERERGSERGRDRDR 54
          +RE   +R R R+ +++RER+R+R+RERER  ER R+R+R
Sbjct: 3  ERERERERERERERERERERERERERERERERERERERER 122


>TC219166 similar to GB|AAA36308.1|386949|HUMMHRD5 MHC HLA-RD protein {Homo
           sapiens;} , partial (12%)
          Length = 774

 Score = 45.8 bits (107), Expect = 3e-05
 Identities = 31/116 (26%), Positives = 56/116 (47%), Gaps = 5/116 (4%)
 Frame = +3

Query: 7   DSKLRHSKFDREPSPKRYRRDGKQDRERDRDRDRERERGSERGRDRDRVTTNGGGGAGGD 66
           D  +  SK DR+      R D  +DRER RDR+R+R+R  +R + RDR   + G  +  +
Sbjct: 192 DEPILKSKADRKIEAIERRADRDRDRERYRDRERDRDRDRDRTKSRDR---DRGRDSDKE 362

Query: 67  QNPTDRDQRNLPPPPH-SKQESVGAG----DKKSNDHQEPPKHSAQPPRSRSYYQH 117
           +   + ++  L    H S++ +  +G     K+ + H      S+   R +  ++H
Sbjct: 363 REREEAERGKLKDRDHRSRERAKDSGHSEKSKRHSSHDRDSHGSSYSSREKDRHRH 530



 Score = 31.2 bits (69), Expect = 0.67
 Identities = 31/119 (26%), Positives = 47/119 (39%), Gaps = 6/119 (5%)
 Frame = +3

Query: 5   DSDSKLRHSKFDREPSPKRYRRDGKQDRERDRDRDRERE----RGSERGRDRDRVTTNGG 60
           D +SK   ++ +    P    +  ++    +R  DR+R+    R  ER RDRDR  T   
Sbjct: 150 DDESKGMITEGEARDEPILKSKADRKIEAIERRADRDRDRERYRDRERDRDRDRDRTKS- 326

Query: 61  GGAGGDQNPTDRDQRNLPPPPHSKQESVGAGDKKSNDH--QEPPKHSAQPPRSRSYYQH 117
                     DRD R        ++E    G  K  DH  +E  K S    +S+ +  H
Sbjct: 327 ---------RDRD-RGRDSDKEREREEAERGKLKDRDHRSRERAKDSGHSEKSKRHSSH 473


>AW132790 
          Length = 402

 Score = 45.8 bits (107), Expect = 3e-05
 Identities = 20/29 (68%), Positives = 24/29 (81%)
 Frame = +1

Query: 26  RDGKQDRERDRDRDRERERGSERGRDRDR 54
           RD ++DR+R RDRDR R+R  ERGRDRDR
Sbjct: 169 RDRERDRDRGRDRDRTRDRDRERGRDRDR 255



 Score = 44.7 bits (104), Expect = 6e-05
 Identities = 19/39 (48%), Positives = 28/39 (71%)
 Frame = +1

Query: 21  PKRYRRDGKQDRERDRDRDRERERGSERGRDRDRVTTNG 59
           P+ + RD  ++R+RDRDR+R+R+RG +R R RDR    G
Sbjct: 124 PQIHHRDRDRNRDRDRDRERDRDRGRDRDRTRDRDRERG 240



 Score = 44.3 bits (103), Expect = 8e-05
 Identities = 26/53 (49%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
 Frame = +1

Query: 3   HRDSDSKLRHSKFDREPSPKRYR-RDGKQDRERDRDRDRERERGSERGRDRDR 54
           HRD D   R    DRE    R R RD  +DR+R+R RDR+R+R  +R R+RDR
Sbjct: 136 HRDRDRN-RDRDRDRERDRDRGRDRDRTRDRDRERGRDRDRDREYDRHRERDR 291



 Score = 37.0 bits (84), Expect = 0.012
 Identities = 18/42 (42%), Positives = 24/42 (56%)
 Frame = +1

Query: 32  RERDRDRDRERERGSERGRDRDRVTTNGGGGAGGDQNPTDRD 73
           R+RDR+RDR+R+R  +R R RDR  T       G     DR+
Sbjct: 139 RDRDRNRDRDRDRERDRDRGRDRDRTRDRDRERGRDRDRDRE 264



 Score = 32.3 bits (72), Expect = 0.30
 Identities = 20/45 (44%), Positives = 27/45 (59%), Gaps = 6/45 (13%)
 Frame = +1

Query: 16  DREPSPKRYRRDGK-QDRERDRDRDRERERGSE-----RGRDRDR 54
           DR+ +  R R  G+ +DR+R+ DR RER+R  E     RGR  DR
Sbjct: 202 DRDRTRDRDRERGRDRDRDREYDRHRERDRDYEVGDPDRGRSLDR 336


>TC224723 hydroxyproline-rich glycoprotein
          Length = 2345

 Score = 45.4 bits (106), Expect = 3e-05
 Identities = 27/76 (35%), Positives = 41/76 (53%)
 Frame = -3

Query: 6   SDSKLRHSKFDREPSPKRYRRDGKQDRERDRDRDRERERGSERGRDRDRVTTNGGGGAGG 65
           S  ++RH + +RE   +R R     +RER+R+R+RERER  ER R+R+R           
Sbjct: 717 SSCRIRHEERERERERERER-----ERERERERERERERERERERERER----------- 586

Query: 66  DQNPTDRDQRNLPPPP 81
           +++P        PPPP
Sbjct: 585 ERSPPPPYYYKSPPPP 538



 Score = 40.4 bits (93), Expect = 0.001
 Identities = 18/38 (47%), Positives = 28/38 (73%)
 Frame = -2

Query: 17  REPSPKRYRRDGKQDRERDRDRDRERERGSERGRDRDR 54
           +E  P   R + +++RER+R+R+RERER  ER R+R+R
Sbjct: 721 KELVPNSARGERERERERERERERERERERERERERER 608


>TC203738 homologue to UP|RS5_CICAR (O65731) 40S ribosomal protein S5
           (Fragment), partial (88%)
          Length = 1846

 Score = 44.7 bits (104), Expect = 6e-05
 Identities = 37/127 (29%), Positives = 61/127 (47%), Gaps = 16/127 (12%)
 Frame = +1

Query: 2   SHRDSDSKLRHSKFDREPSPKRYR-RDGKQDRERDRDRDRERERGSE------------- 47
           +H+ S  ++RH + +RE   +R R R+ +++RER+R+R+RERER  E             
Sbjct: 769 NHKTSWCRIRHER-ERERERERERERERERERERERERERERERERELQDCILVRKIS*Q 945

Query: 48  --RGRDRDRVTTNGGGGAGGDQNPTDRDQRNLPPPPHSKQESVGAGDKKSNDHQEPPKHS 105
             R R + +       GA   Q  T    +       +++ESV AG +   +H  P + S
Sbjct: 946 NGRNRSKPKEGWLPHMGAVNSQGSTSYHSKCTFIQISNERESVEAGIQNCWNHWRPMERS 1125

Query: 106 AQPPRSR 112
           A  P+ R
Sbjct: 1126AWRPQRR 1146



 Score = 38.1 bits (87), Expect = 0.006
 Identities = 17/56 (30%), Positives = 33/56 (58%)
 Frame = +2

Query: 5   DSDSKLRHSKFDREPSPKRYRRDGKQDRERDRDRDRERERGSERGRDRDRVTTNGG 60
           +  ++L  ++F      +   R+ +++RER+R+R+RERER  ER R+  ++    G
Sbjct: 764 EKTTRLAGAEFGTRERERERERERERERERERERERERERERERERESFKIVFLSG 931


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.307    0.128    0.369 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,498,733
Number of Sequences: 63676
Number of extensions: 219985
Number of successful extensions: 10413
Number of sequences better than 10.0: 658
Number of HSP's better than 10.0 without gapping: 3643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6375
length of query: 330
length of database: 12,639,632
effective HSP length: 98
effective length of query: 232
effective length of database: 6,399,384
effective search space: 1484657088
effective search space used: 1484657088
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 59 (27.3 bits)


Lotus: description of TM0218.18