TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0218.17
         (581 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

AW755655                                                               58  1e-08
TC212893 similar to UP|Q84VX1 (Q84VX1) At4g38650, partial (17%)        51  1e-06
BM091603                                                               36  0.054
CA784757                                                               32  0.60
TC213078                                                               32  0.78
AW099842                                                               30  3.0
TC231236                                                               30  3.9
TC211114                                                               29  5.1
CO983761                                                               28  8.7
BM892548                                                               28  8.7
BF010034 similar to GP|13605655|gb| AT4g15470/dl3775w {Arabidops...    28  8.7

>AW755655 
          Length = 145

 Score = 58.2 bits (139), Expect = 1e-08
 Identities = 26/29 (89%), Positives = 27/29 (92%)
 Frame = +3

Query: 88  ARNRTQPLDSFSQKIQLKKGMLYTFSAWL 116
           A NRT PLDSFSQK+QLKKGMLYTFSAWL
Sbjct: 51  AHNRTHPLDSFSQKVQLKKGMLYTFSAWL 137


>TC212893 similar to UP|Q84VX1 (Q84VX1) At4g38650, partial (17%)
          Length = 609

 Score = 51.2 bits (121), Expect = 1e-06
 Identities = 27/72 (37%), Positives = 39/72 (53%), Gaps = 3/72 (4%)
 Frame = +3

Query: 443 LDLLGATGFPIWLTETSIDP---QPHQEDYFDWILREGYAHPAVQGIIMFMGPVQAGFKK 499
           LD L   G PIWLTE  I     +  Q +Y + +LREG++HP+V GI+++      G  +
Sbjct: 9   LDKLATLGLPIWLTEVDISKTLDRDAQANYLEEVLREGFSHPSVNGIMLWTAFHPNGCYQ 188

Query: 500 APLADENFKNTP 511
             L D  F+  P
Sbjct: 189 MCLTDNYFQEPP 224



 Score = 41.2 bits (95), Expect = 0.001
 Identities = 24/73 (32%), Positives = 31/73 (41%)
 Frame = +1

Query: 493 VQAGFKKAPLADENFKNTPIGDVVDMLIREWGTGPHEAKADSRGIVDISLHHGDYDVIVT 552
           +Q G  K       F+N P GDVVD L+ EW     E   D  G        G+Y + V 
Sbjct: 169 IQMGATKCA*QTIIFRNLPAGDVVDKLVEEWQISRVEGVTDVHGSYSFYGFLGEYRISVK 348

Query: 553 HPQKQISKTLNLS 565
           +  K    T +LS
Sbjct: 349 YGNKTTKSTFSLS 387


>BM091603 
          Length = 198

 Score = 35.8 bits (81), Expect = 0.054
 Identities = 19/33 (57%), Positives = 21/33 (63%)
 Frame = +2

Query: 549 VIVTHPQKQISKTLNLSVRKGSPQQTIQVKMHA 581
           V VTHP      TLNLSV+K    +TI VKMHA
Sbjct: 2   VTVTHPLIHSPITLNLSVKKDFSLETIHVKMHA 100


>CA784757 
          Length = 409

 Score = 32.3 bits (72), Expect = 0.60
 Identities = 16/34 (47%), Positives = 20/34 (58%)
 Frame = +1

Query: 429 FASGQPNLAYMRAGLDLLGATGFPIWLTETSIDP 462
           F+  +P LA+ R GL L   TGFP WL   S+ P
Sbjct: 292 FSGPRPQLAWFRNGLRL---TGFPFWLRSFSLGP 384


>TC213078 
          Length = 434

 Score = 32.0 bits (71), Expect = 0.78
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = -2

Query: 226 TTKQTKLDFPFGCGINNNILTNSEYQKWFLSRFKYTTFTNQ 266
           T K T L     C  ++ +L   EY +W  SRF Y TF+N+
Sbjct: 334 T*KHTSLSIVLSC--SSELLVLVEY*RWCCSRFNYATFSNR 218


>AW099842 
          Length = 355

 Score = 30.0 bits (66), Expect = 3.0
 Identities = 17/47 (36%), Positives = 23/47 (48%)
 Frame = +1

Query: 533 DSRGIVDISLHHGDYDVIVTHPQKQISKTLNLSVRKGSPQQTIQVKM 579
           D +G  +    HG YDV V  P K+ISKT  L   KG     + + +
Sbjct: 25  DEQGQYNFRGFHGTYDVQVVTPSKKISKTFVLD--KGDSPLVVSIDL 159


>TC231236 
          Length = 1393

 Score = 29.6 bits (65), Expect = 3.9
 Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 7/78 (8%)
 Frame = +2

Query: 44  PHREHYGGGIIVNPGFDHNLEGWTVFGNGAIEERRSNEGNAFIVARNRTQPLD-----SF 98
           P      G I+  P   + +  WT+ G     +    +G+  +V  + T  +      S 
Sbjct: 146 PKPSELKGSIVTTP---NGIPHWTISGMVEYIKSGQKQGDMVLVVPHGTYAVRLGNEASI 316

Query: 99  SQKIQLKKGMLY--TFSA 114
            QKIQ+ KGM Y  TFSA
Sbjct: 317 KQKIQVVKGMFYSLTFSA 370


>TC211114 
          Length = 614

 Score = 29.3 bits (64), Expect = 5.1
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = -2

Query: 113 SAWLQLSEGSDTVSVVFKINGRELIRGGHVIAKHGCWTLMKGGLVANF 160
           ++W QL      ++V+FK+NGR          +  CW L+    VA F
Sbjct: 307 NSWFQL------IAVIFKLNGRTPNLFLQAFERRICWDLLSSASVAEF 182


>CO983761 
          Length = 775

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = +3

Query: 5   AEGCSLLFTTSFLILISGLTVHSLSHSYDYSATTECLAEPHREHY 49
           A   SLL +TS L+    L  H+  HS   +   +CL  P  +HY
Sbjct: 624 ASSHSLLHSTS*LLHKYLLKAHNYQHSLAPTQKAKCLLSPQVQHY 758


>BM892548 
          Length = 437

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 12/45 (26%), Positives = 20/45 (43%)
 Frame = +1

Query: 37  TTECLAEPHREHYGGGIIVNPGFDHNLEGWTVFGNGAIEERRSNE 81
           TT C+    R +Y    + N     N E W   GNG++ +   ++
Sbjct: 217 TTRCIGSSARIYYVSSSLSNKTHLCNAEAWLTSGNGSVHDEYDDD 351


>BF010034 similar to GP|13605655|gb| AT4g15470/dl3775w {Arabidopsis
           thaliana}, partial (7%)
          Length = 338

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 15/47 (31%), Positives = 26/47 (54%)
 Frame = +2

Query: 297 SVRGHNIFWDDPKQQPQWVKSLSPEELRKAAAKRINSVASRYSGELI 343
           S+RGH+           W+ +L P+EL     +R++S +SR +G L+
Sbjct: 89  SMRGHD-----------WINTLIPDELLIEIFRRLDSKSSRDAGSLV 196


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.318    0.134    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,444,757
Number of Sequences: 63676
Number of extensions: 357719
Number of successful extensions: 1688
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1687
length of query: 581
length of database: 12,639,632
effective HSP length: 102
effective length of query: 479
effective length of database: 6,144,680
effective search space: 2943301720
effective search space used: 2943301720
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)