TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0215b.3
         (66 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC233510 similar to UP|Q8LAM9 (Q8LAM9) Pollen coat-like protein,...    91  2e-19
TC224091 similar to UP|Q8LAM9 (Q8LAM9) Pollen coat-like protein,...    90  2e-19
TC232040 weakly similar to UP|Q8LAM9 (Q8LAM9) Pollen coat-like p...    79  3e-16
TC226209 UP|Q9XET0 (Q9XET0) Seed maturation protein PM30, complete     47  3e-06
TC219195 similar to UP|LEA1_CICAR (O49816) Late embryogenesis ab...    39  4e-04
CK605689                                                               33  0.037
BU544513 homologue to PIR|S33520|S33 Lea protein - soybean, part...    28  0.70
TC222193 UP|Q39873 (Q39873) Lea protein precursor, complete            28  0.70
NP005117 51 kDa seed maturation protein                                27  2.1
TC233220 similar to UP|Q9M9T8 (Q9M9T8) F6A14.22 protein, partial...    25  7.8

>TC233510 similar to UP|Q8LAM9 (Q8LAM9) Pollen coat-like protein, partial
           (94%)
          Length = 253

 Score = 90.5 bits (223), Expect = 2e-19
 Identities = 46/63 (73%), Positives = 53/63 (84%)
 Frame = +2

Query: 4   SQNLSHQAGQATGQAQEKASNMMGNARNAAQSAQQSCQEAGQQMKAKAQGAADAVKSAIG 63
           SQN+S+ AGQA GQAQEKA+ +M  A NAAQSAQ+S QE GQQM+AKAQGAADAVK+A G
Sbjct: 38  SQNMSNNAGQAKGQAQEKANTVMDKASNAAQSAQESLQEVGQQMQAKAQGAADAVKNATG 217

Query: 64  ANK 66
            NK
Sbjct: 218 MNK 226


>TC224091 similar to UP|Q8LAM9 (Q8LAM9) Pollen coat-like protein, partial
          (93%)
          Length = 366

 Score = 90.1 bits (222), Expect = 2e-19
 Identities = 46/62 (74%), Positives = 52/62 (83%)
 Frame = +3

Query: 4  SQNLSHQAGQATGQAQEKASNMMGNARNAAQSAQQSCQEAGQQMKAKAQGAADAVKSAIG 63
          SQN+S+ AGQA GQAQEKA NMM  A +AAQSAQ S Q+AGQQM+AKAQGAADAVK+A G
Sbjct: 9  SQNMSYNAGQAKGQAQEKAGNMMDKASSAAQSAQNSMQQAGQQMQAKAQGAADAVKNATG 188

Query: 64 AN 65
           N
Sbjct: 189MN 194


>TC232040 weakly similar to UP|Q8LAM9 (Q8LAM9) Pollen coat-like protein,
          partial (85%)
          Length = 326

 Score = 79.3 bits (194), Expect = 3e-16
 Identities = 39/62 (62%), Positives = 50/62 (79%)
 Frame = +3

Query: 5  QNLSHQAGQATGQAQEKASNMMGNARNAAQSAQQSCQEAGQQMKAKAQGAADAVKSAIGA 64
          Q +++QAGQA GQAQEK +N+M  A NAAQSA+++ Q+AGQ + A AQGAADAVK+A G 
Sbjct: 27 QKMNYQAGQAQGQAQEKTNNLMDMAGNAAQSAKETAQQAGQTVMASAQGAADAVKNATGM 206

Query: 65 NK 66
          NK
Sbjct: 207NK 212


>TC226209 UP|Q9XET0 (Q9XET0) Seed maturation protein PM30, complete
          Length = 727

 Score = 46.6 bits (109), Expect = 3e-06
 Identities = 23/56 (41%), Positives = 31/56 (55%)
 Frame = +3

Query: 4   SQNLSHQAGQATGQAQEKASNMMGNARNAAQSAQQSCQEAGQQMKAKAQGAADAVK 59
           S   S++AGQ  G+ +EK +  MGN    AQ+A++  QE  Q  K K Q  A A K
Sbjct: 99  SHRQSYEAGQTKGRTEEKTNQTMGNIGEKAQAAKEKTQEMAQAAKEKTQQTAQAAK 266



 Score = 46.6 bits (109), Expect = 3e-06
 Identities = 25/66 (37%), Positives = 38/66 (56%), Gaps = 4/66 (6%)
 Frame = +3

Query: 2   DQSQNLSHQAGQATGQAQEKASNMMGNARNAAQSAQQS----CQEAGQQMKAKAQGAADA 57
           D SQ    +  Q TG AQ+K S M  + + +AQS + +     Q+ G+++K  AQGA +A
Sbjct: 279 DTSQAAKEKTQQNTGAAQQKTSEMGQSTKESAQSGKDNTQGFLQQTGEKVKGAAQGATEA 458

Query: 58  VKSAIG 63
           VK  +G
Sbjct: 459 VKQTLG 476


>TC219195 similar to UP|LEA1_CICAR (O49816) Late embryogenesis abundant
           protein 1 (CapLEA-1), partial (21%)
          Length = 518

 Score = 39.3 bits (90), Expect = 4e-04
 Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 22/85 (25%)
 Frame = +2

Query: 4   SQNLSHQAGQATGQAQEKASNMMGNARNAA---------------QSAQQS-------CQ 41
           S   +  AGQ  GQ Q KA   + + +  A               Q+AQQ+        Q
Sbjct: 74  SAQQNFNAGQTQGQTQVKAEEFVQSTKETASAATDKANAAANTTGQTAQQNKDESAGFLQ 253

Query: 42  EAGQQMKAKAQGAADAVKSAIGANK 66
           + G+Q+K  AQGA D+VK  +G +K
Sbjct: 254 QTGEQVKNMAQGAVDSVKHTLGMDK 328


>CK605689 
          Length = 818

 Score = 32.7 bits (73), Expect = 0.037
 Identities = 17/50 (34%), Positives = 22/50 (44%)
 Frame = +1

Query: 10  QAGQATGQAQEKASNMMGNARNAAQSAQQSCQEAGQQMKAKAQGAADAVK 59
           + GQA G  ++KA          AQ+AQQ   E  Q  K K    A A +
Sbjct: 151 KTGQAMGTMRDKAEEGRDKTSQTAQTAQQKAHETAQSAKDKTSQTAQAAQ 300



 Score = 31.2 bits (69), Expect = 0.11
 Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 12/74 (16%)
 Frame = +1

Query: 2   DQSQNLSHQAGQAT-GQAQEKASNMMGNARNAAQSAQQSCQ-----------EAGQQMKA 49
           D++ +   + G+A   +AQ+ A      A+ AAQ  +++ +           + G+ +K 
Sbjct: 442 DKAGSYLSETGEAIKNKAQDAAQYTKETAQGAAQYTKETAEAGRDKTGGFLSQTGEHVKQ 621

Query: 50  KAQGAADAVKSAIG 63
            A GAADAVK   G
Sbjct: 622 MAMGAADAVKHTFG 663


>BU544513 homologue to PIR|S33520|S33 Lea protein - soybean, partial (22%)
          Length = 496

 Score = 28.5 bits (62), Expect = 0.70
 Identities = 15/58 (25%), Positives = 29/58 (49%)
 Frame = -1

Query: 2   DQSQNLSHQAGQATGQAQEKASNMMGNARNAAQSAQQSCQEAGQQMKAKAQGAADAVK 59
           D + + SH++ +A+  A E A        +AAQ ++++ + A    +   + A DA K
Sbjct: 466 DYAGDASHKSKEASDYASETAQKTKDYVGDAAQKSKEASEYASDAAQRTKEYAGDATK 293


>TC222193 UP|Q39873 (Q39873) Lea protein precursor, complete
          Length = 1748

 Score = 28.5 bits (62), Expect = 0.70
 Identities = 15/58 (25%), Positives = 29/58 (49%)
 Frame = +3

Query: 2    DQSQNLSHQAGQATGQAQEKASNMMGNARNAAQSAQQSCQEAGQQMKAKAQGAADAVK 59
            D + + SH++ +A+  A E A        +AAQ ++++ + A    +   + A DA K
Sbjct: 1056 DYAGDASHKSKEASDYASETAQKTKDYVGDAAQKSKEASEYASDAAQRTKEYAGDATK 1229


>NP005117 51 kDa seed maturation protein
          Length = 1422

 Score = 26.9 bits (58), Expect = 2.1
 Identities = 17/63 (26%), Positives = 31/63 (48%), Gaps = 3/63 (4%)
 Frame = +1

Query: 2    DQSQNLSHQAGQATGQAQE---KASNMMGNARNAAQSAQQSCQEAGQQMKAKAQGAADAV 58
            + S + SH++ +A+  A E   K  + +G+A   ++ A +   +A Q+ K  A  A    
Sbjct: 991  EYSGDASHKSKEASDYASETAKKTKDYVGDAAQRSKGAAEYASDAAQRTKEYAGDATKRS 1170

Query: 59   KSA 61
            K A
Sbjct: 1171 KEA 1179


>TC233220 similar to UP|Q9M9T8 (Q9M9T8) F6A14.22 protein, partial (19%)
          Length = 566

 Score = 25.0 bits (53), Expect = 7.8
 Identities = 12/42 (28%), Positives = 16/42 (37%)
 Frame = +1

Query: 5   QNLSHQAGQATGQAQEKASNMMGNARNAAQSAQQSCQEAGQQ 46
           QNL H   QA         +M    RN  +     C+E  Q+
Sbjct: 160 QNLMHVTHQACQYTHLARKSMQNTGRNQGKKLADECEELKQE 285


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.300    0.108    0.271 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,227,091
Number of Sequences: 63676
Number of extensions: 5771
Number of successful extensions: 31
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of query: 66
length of database: 12,639,632
effective HSP length: 42
effective length of query: 24
effective length of database: 9,965,240
effective search space: 239165760
effective search space used: 239165760
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.8 bits)
S2: 52 (24.6 bits)