TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0214.3
         (605 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC234187 weakly similar to UP|MFP1_LYCES (P93203) MAR binding fi...    47  2e-05
TC230862                                                               38  0.011
TC212535                                                               37  0.033
TC215813 similar to UP|O49529 (O49529) Predicted protein, partia...    27  0.11
TC211867 weakly similar to UP|PNX1_HUMAN (P55347) Homeobox prote...    33  0.28
NP004994 G/HBF-1                                                       32  0.81
TC230774 similar to UP|Q945L6 (Q945L6) AT3g11590/F24K9_26, parti...    32  0.81
TC210783 weakly similar to UP|O14760 (O14760) Small intestinal m...    32  0.81
TC207361 similar to UP|Q9FMU9 (Q9FMU9) Similarity to ATFP3, part...    32  1.1
TC217193 similar to UP|Q7XJN2 (Q7XJN2) At2g40650 protein, partia...    31  1.4
BI788076                                                               31  1.4
TC224855 similar to UP|KHL1_HUMAN (Q9NR64) Kelch-like protein 1,...    31  1.4
CK605900                                                               31  1.4
BU760572                                                               31  1.4
BF010312                                                               31  1.8
TC220904 homologue to GB|AAS47665.1|44681450|BT011659 At5g03110 ...    31  1.8
TC225251 weakly similar to GB|AAO64828.1|29028898|BT005893 At3g5...    31  1.8
TC227595 homologue to UP|Q43451 (Q43451) G-box binding factor (F...    31  1.8
TC228085 similar to UP|Q9LK27 (Q9LK27) Gb|AAF01563.1, partial (17%)    30  2.4
TC207195                                                               30  2.4

>TC234187 weakly similar to UP|MFP1_LYCES (P93203) MAR binding filament-like
           protein 1, partial (6%)
          Length = 595

 Score = 47.0 bits (110), Expect = 2e-05
 Identities = 41/164 (25%), Positives = 78/164 (47%)
 Frame = +2

Query: 436 AKQLEEKEREILKMKATMKLLDSSNKVSEKKAADLALENERLKKHAEALSATQKVKEGEL 495
           +K L EKE E+ ++K   +L       S+   ADL+ E + LK+  +  + + KV     
Sbjct: 101 SKVLREKEEELHQLKDQFELALGEASKSQIVIADLSQERDDLKEALD--NESSKVNH--- 265

Query: 496 VKSQAEITELNSANSELKNENSKLHSEISELKNSILDQLEAGFSKAKEQILFLNPQVSIN 555
           +K + ++T  N A S  +NE+++L + ++ L N +  +LE   SK   ++  +N  +  N
Sbjct: 266 LKQELQVTLENLAKS--RNESAELENLLT-LSNKLCKELELEVSKLSSELTEVNESLQRN 436

Query: 556 LAGSNPYARIVDGKLINPDTGDEEEEEEYEGDKNEEDGNANNNE 599
           L  +   A ++  +L       +E + E +G   E       N+
Sbjct: 437 LDDAKHEAEMLASELTTAKEHLKEAQAELQGVSKELTAALEKND 568


>TC230862 
          Length = 868

 Score = 38.1 bits (87), Expect = 0.011
 Identities = 37/127 (29%), Positives = 57/127 (44%), Gaps = 6/127 (4%)
 Frame = +1

Query: 436 AKQLEEKEREILKMKATMKLLDSSNKVSEKKAADLALENERLKKHAEALSATQKVKEGEL 495
           A  LE  + E+   +  +KLL S+   SEK+   +  + E ++   E+  + +K  E EL
Sbjct: 307 AVTLEFAKWELADAEKELKLLKSAVSSSEKEYDQIQKDTEAIEMELESERSLRKKLEEEL 486

Query: 496 VKSQAEITELNSANSELKNENSKLHSEISELKNSILDQLEAGFSKAKEQI------LFLN 549
            +   +I EL S   E   +  KL  EI   KN I  +      + KE +      LF N
Sbjct: 487 RELNCKIDELTSETGETTIQ--KLEKEIRICKNMI--KCTVCTDRPKEVVIVKCYHLFCN 654

Query: 550 PQVSINL 556
           P +  NL
Sbjct: 655 PCIQRNL 675


>TC212535 
          Length = 757

 Score = 36.6 bits (83), Expect = 0.033
 Identities = 17/45 (37%), Positives = 28/45 (61%)
 Frame = +1

Query: 106 VLTLLNVSPTQLHCNSWAYLRAFELLCQLLGIEPTSNRFFYFFET 150
           VL + N +P+QLH N    ++AF +L +   +EPT+  F + F+T
Sbjct: 226 VLHIPNTAPSQLHPNG*VAIQAFCILYRFFRMEPTTGLFLHHFQT 360


>TC215813 similar to UP|O49529 (O49529) Predicted protein, partial (13%)
          Length = 663

 Score = 26.9 bits (58), Expect(2) = 0.11
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +2

Query: 291 LIDADASHSGTESNRPQKKKKRNETPEPT 319
           L D D  H+G++   P KK     TP PT
Sbjct: 98  LDDDDDDHNGSDLKSPPKKPDSVSTPSPT 184



 Score = 26.6 bits (57), Expect(2) = 0.11
 Identities = 12/28 (42%), Positives = 15/28 (52%)
 Frame = +2

Query: 347 SSSAPPPTWKSVLKEFEELTSEEVTSLW 374
           S S P PT + V ++F ELT      LW
Sbjct: 161 SVSTPSPTARGVKEDFSELTKSFSRQLW 244


>TC211867 weakly similar to UP|PNX1_HUMAN (P55347) Homeobox protein PKNOX1
           (PBX/knotted homeobox 1) (Homeobox protein PREP-1),
           partial (6%)
          Length = 900

 Score = 33.5 bits (75), Expect = 0.28
 Identities = 21/76 (27%), Positives = 33/76 (42%)
 Frame = +3

Query: 302 ESNRPQKKKKRNETPEPTKGKDASQPSMEKFMMKNNPQHLAHQSGSSSAPPPTWKSVLKE 361
           E   PQ++K R +  +  K K   +P+ +K  MK NP         ++A P T       
Sbjct: 102 EQKAPQRRKHRPKVIKEAKPKSTRKPATQKTQMKENPHKKRKYVRKTAATPQT------- 260

Query: 362 FEELTSEEVTSLWDSK 377
              +T E V S+  +K
Sbjct: 261 --NVTEESVDSIVATK 302


>NP004994 G/HBF-1
          Length = 1137

 Score = 32.0 bits (71), Expect = 0.81
 Identities = 27/113 (23%), Positives = 56/113 (48%), Gaps = 5/113 (4%)
 Frame = +1

Query: 419 ISKMVDLETAGFDGINSAKQLEEKEREILKMKATMKLLDSSNKVSEKKAADLALENERLK 478
           ++K+ D +  G  GI S   +++K   ++++++T     SS + S+   A+   E  +  
Sbjct: 340 VAKIQDKDAGGPVGIPSLPPVQKKP--VVQVRSTTS--GSSREQSDDDEAEGEAETTQGM 507

Query: 479 KHAEALSATQKVKEGELVK-----SQAEITELNSANSELKNENSKLHSEISEL 526
             A+A    + +   E  +      QA +TEL +  S+L+ ENS L   ++++
Sbjct: 508 DPADAKRVRRMLSNRESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDI 666


>TC230774 similar to UP|Q945L6 (Q945L6) AT3g11590/F24K9_26, partial (43%)
          Length = 1176

 Score = 32.0 bits (71), Expect = 0.81
 Identities = 40/171 (23%), Positives = 76/171 (44%), Gaps = 11/171 (6%)
 Frame = +3

Query: 440 EEKEREILKMKATMKLLDSSNKVS--EKKAADLALENERLKKHAEALSATQKVKEGELVK 497
           E++ REI++        D+    S  EK+        E ++K  E +  T +++E    K
Sbjct: 468 EKRAREIIEQVCDELARDADEDKSDIEKQKRVSTKVCEEVEKEKEIMQLTDRLREERAQK 647

Query: 498 SQAEITELNSANSELKNENSKLHSEISELKNSILDQLEAGFS------KAKEQILFLNPQ 551
                 +L+ A  +L+ +N+     + +L+N    QLEA         K++      + +
Sbjct: 648 ------KLSEAKYQLEEKNAA----VDKLRN----QLEAFLGGKQVREKSRSSTHLSDEE 785

Query: 552 VSINLAGSNPYARIVDGKLINP---DTGDEEEEEEYEGDKNEEDGNANNNE 599
           ++  L+ S   + +V+ K  +    D G E EEE  E D +  + N +NN+
Sbjct: 786 IAAYLSRSRLGSHLVEDKEDDRGEVDNGVECEEESAESDLHSIELNMDNNK 938


>TC210783 weakly similar to UP|O14760 (O14760) Small intestinal mucin MUC3
           (Fragment), partial (5%)
          Length = 735

 Score = 32.0 bits (71), Expect = 0.81
 Identities = 36/148 (24%), Positives = 66/148 (44%), Gaps = 3/148 (2%)
 Frame = +3

Query: 360 KEFEELTSEEVTSLWDSKIDFNALVETNLVFK---ADQEKIKRIGLKEACQAIMTKGLEI 416
           K F+E T +E+T   D + D   ++E N + K    + E  K +G+++  +      +E 
Sbjct: 255 KSFQEKTLDEITEKKDLETDGGKVLENNGIKKNIVKEIEDKKAVGVEKVEEDKKNGVVED 434

Query: 417 AAISKMVDLETAGFDGINSAKQLEEKEREILKMKATMKLLDSSNKVSEKKAADLALENER 476
           A   K         DG+  AK  E+K+  + ++K   K  D   +  E K  D   E + 
Sbjct: 435 AKEDKKE-------DGVKEAK--EDKKEVVEEVKEDNK-EDGVEEAKENKKEDGVEEVKE 584

Query: 477 LKKHAEALSATQKVKEGELVKSQAEITE 504
           +K+    +   +++KE + V    E+ E
Sbjct: 585 VKE----VDGVKEIKEDKEVDGVKEVKE 656


>TC207361 similar to UP|Q9FMU9 (Q9FMU9) Similarity to ATFP3, partial (53%)
          Length = 1127

 Score = 31.6 bits (70), Expect = 1.1
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = +1

Query: 577 DEEEEEEYEGDKNEEDGNANNNEGEGE 603
           +EEEEE  E  K EE+G   N +G GE
Sbjct: 679 EEEEEEAKEEKKAEEEGEKKNEKGSGE 759


>TC217193 similar to UP|Q7XJN2 (Q7XJN2) At2g40650 protein, partial (88%)
          Length = 1691

 Score = 31.2 bits (69), Expect = 1.4
 Identities = 15/57 (26%), Positives = 25/57 (43%)
 Frame = +3

Query: 273  RFRREQQAAREKRNPAKTLIDADASHSGTESNRPQKKKKRNETPEPTKGKDASQPSM 329
            R RRE      ++  A++ +       G E   P+KKKK+ +  +   G D   P +
Sbjct: 1137 RDRREHDGGDYRKRHARSSVSPRRHGDGLEDGEPKKKKKKEKKEKKDDGTDHPDPEI 1307


>BI788076 
          Length = 368

 Score = 31.2 bits (69), Expect = 1.4
 Identities = 22/92 (23%), Positives = 43/92 (45%), Gaps = 7/92 (7%)
 Frame = +3

Query: 420 SKMVDLETAGFDGINSAKQLEEKEREILKMKATMKLLDSSNKVSEKKAADLALENERLKK 479
           +K   LE      + SAK+    + E+L ++  +KLL+   K  E +  ++  ENE   +
Sbjct: 105 AKDASLEKLEACNVESAKE----KSEVLALREKVKLLEEEQKDFELRINNVMAENEACHE 272

Query: 480 H-------AEALSATQKVKEGELVKSQAEITE 504
           H        E+L  +  + E     ++A++T+
Sbjct: 273 HLIEMENFVESLKESIDIAENRAESAEAKVTQ 368


>TC224855 similar to UP|KHL1_HUMAN (Q9NR64) Kelch-like protein 1, partial
           (3%)
          Length = 885

 Score = 31.2 bits (69), Expect = 1.4
 Identities = 18/37 (48%), Positives = 24/37 (64%)
 Frame = -3

Query: 568 GKLINPDTGDEEEEEEYEGDKNEEDGNANNNEGEGEN 604
           GKL     G++EEEEE E +K EE+G A   + +GEN
Sbjct: 241 GKLQKAKKGEDEEEEE-EEEKEEEEGRAECRD-KGEN 137


>CK605900 
          Length = 389

 Score = 31.2 bits (69), Expect = 1.4
 Identities = 24/71 (33%), Positives = 31/71 (42%)
 Frame = +2

Query: 283 EKRNPAKTLIDADASHSGTESNRPQKKKKRNETPEPTKGKDASQPSMEKFMMKNNPQHLA 342
           EK+NP K          GT   R  KKKK  ET  P K K A + + ++ +    P    
Sbjct: 41  EKKNPKKK-----GGGGGTPQKRA-KKKKTGET--PPKKKKALKGAPQRELPSQGPPPQK 196

Query: 343 HQSGSSSAPPP 353
             S +  APPP
Sbjct: 197 RGSPAKKAPPP 229


>BU760572 
          Length = 449

 Score = 31.2 bits (69), Expect = 1.4
 Identities = 40/147 (27%), Positives = 64/147 (43%), Gaps = 9/147 (6%)
 Frame = +2

Query: 407 QAIMTKGLEIAAIS----KMVDLETAGFDGINSAKQLEEK----EREILKMKATMKLLDS 458
           +A+ T G   A +     K+  LET   D  N +  LE++      E  K+   +   +S
Sbjct: 2   EAVATSGTHKAELEESLVKLKHLETVIEDLQNKSLHLEKETTGLNEENSKLNQGIASYES 181

Query: 459 S-NKVSEKKAADLALENERLKKHAEALSATQKVKEGELVKSQAEITELNSANSELKNENS 517
             + + EK +A L  + E +K   E L+    +KE     S AE+  LNS  S + +E +
Sbjct: 182 KLSDLQEKLSAALVEKEETVK---ELLTLKDVIKELGTAHS-AEVQTLNSQISSVGDEKN 349

Query: 518 KLHSEISELKNSILDQLEAGFSKAKEQ 544
            L+     LK  +   +     K KEQ
Sbjct: 350 MLNETNQNLKKELQSLIFDLEEKLKEQ 430


>BF010312 
          Length = 415

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 16/44 (36%), Positives = 22/44 (49%)
 Frame = +2

Query: 195 KDVFYFNDGSPKFPFYWTARYEAIIKLPDDSLTPEEMVDCTFLS 238
           K+ FY   G+P FPFYW        K P + L+ ++  D   LS
Sbjct: 218 KNFFYDLAGNPLFPFYWKQCPRWYDKYPKELLSTDKRQDLETLS 349


>TC220904 homologue to GB|AAS47665.1|44681450|BT011659 At5g03110 {Arabidopsis
           thaliana;} , partial (7%)
          Length = 708

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 22/85 (25%), Positives = 38/85 (43%), Gaps = 5/85 (5%)
 Frame = +1

Query: 274 FRREQQAAR--EKRNPAKTLIDADASHS---GTESNRPQKKKKRNETPEPTKGKDASQPS 328
           +R EQ  A    +RNP + L++  + H     +    PQ + +  + P P    +   P+
Sbjct: 145 WREEQNRAT*SHQRNPFRALVEPRSFHHR**DS*ETMPQAEAEEGQEPPPPCF*ERRTPT 324

Query: 329 MEKFMMKNNPQHLAHQSGSSSAPPP 353
           + K      P+ LA    + +APPP
Sbjct: 325 ILKHKNPLPPKSLAWGKSALNAPPP 399


>TC225251 weakly similar to GB|AAO64828.1|29028898|BT005893 At3g56480
           {Arabidopsis thaliana;} , partial (48%)
          Length = 1272

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 27/118 (22%), Positives = 51/118 (42%), Gaps = 4/118 (3%)
 Frame = +1

Query: 432 GINSAKQLEEKE-REILKMKATM---KLLDSSNKVSEKKAADLALENERLKKHAEALSAT 487
           G  +AK  EE   RE   ++  +   KL D+   +  + A     + E      EAL+  
Sbjct: 1   GTRAAKLSEEARLREAASLEKHVLLKKLRDALESLKGRVAGRNKDDVEEAIAIVEALAVQ 180

Query: 488 QKVKEGELVKSQAEITELNSANSELKNENSKLHSEISELKNSILDQLEAGFSKAKEQI 545
              +EGEL++ +AE+ +L +   +   +  KL  E      + ++   A   + +E +
Sbjct: 181 LTQREGELIQEKAEVKKLANFLKQASEDAKKLVDEERAFARAEIEDARAAVQRVEEAL 354


>TC227595 homologue to UP|Q43451 (Q43451) G-box binding factor (Fragment),
           complete
          Length = 1453

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 34/133 (25%), Positives = 57/133 (42%), Gaps = 6/133 (4%)
 Frame = +3

Query: 469 DLALENERLKKHAEALSATQKVKEGELVKSQAEITELNSANSELKNENSKLHSEISELKN 528
           +  L+NER  K      + ++      ++ QAE  EL      L  EN  L SEI+ L  
Sbjct: 642 ETCLQNERELKRERRKQSNRESARRSRLRKQAETEELARKVEMLTAENVSLKSEITRLTE 821

Query: 529 SILDQLEAGFSKAKEQIL--FLNPQVSINLAG--SNPYARIVDGKLIN--PDTGDEEEEE 582
              +Q+    S  +E+++   L P+  I L+   S   A +    L++   ++G  +   
Sbjct: 822 G-SEQMRMENSALREKLINTQLGPREEITLSSIDSKRAAPVSTENLLSRVNNSGANDRTA 998

Query: 583 EYEGDKNEEDGNA 595
           E E D  E   N+
Sbjct: 999 ENENDICENKPNS 1037


>TC228085 similar to UP|Q9LK27 (Q9LK27) Gb|AAF01563.1, partial (17%)
          Length = 947

 Score = 30.4 bits (67), Expect = 2.4
 Identities = 41/167 (24%), Positives = 74/167 (43%), Gaps = 3/167 (1%)
 Frame = +1

Query: 440 EEKEREILKMKATMKLLDSSNKVSEKKAADLALENERLKKHAEALSATQKVKEGELVKSQ 499
           ++++R+  K++   + L+   K  + +    A   E  ++ AEA +A +  ++ EL +  
Sbjct: 7   KDEKRDPEKLRIEREDLERRQKEEKARLQAEAKAAEEAQRKAEAEAAAEAKRKRELEREA 186

Query: 500 AEITELNSANSELKNENSKLHSEISELKNSILDQLEAGFSKAKEQILFLNPQVS---INL 556
           A         +   NENS    ++ E+ +++ D+    F   KE+     PQ     I L
Sbjct: 187 ARQALQKMEKTVDINENSHFLEDL-EMLSAVHDEHLPSF---KEETSADQPQDGLGGIKL 354

Query: 557 AGSNPYARIVDGKLINPDTGDEEEEEEYEGDKNEEDGNANNNEGEGE 603
            G NP  ++  G  +     +EEEEEE E          +N+  EGE
Sbjct: 355 QG-NPLEQL--GLYMK----EEEEEEEEEEPPPSGAAGPSNDVEEGE 474


>TC207195 
          Length = 1194

 Score = 30.4 bits (67), Expect = 2.4
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +3

Query: 306 PQKKKKRNETPEPTKGKDASQPSMEKFMMKNNPQ 339
           P K++ R  TP P++   AS PS+    ++N+P+
Sbjct: 834 PTKRQSRRNTPLPSRISGASSPSLPDHGIRNHPE 935


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.313    0.130    0.365 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,742,037
Number of Sequences: 63676
Number of extensions: 366964
Number of successful extensions: 2500
Number of sequences better than 10.0: 84
Number of HSP's better than 10.0 without gapping: 2217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2390
length of query: 605
length of database: 12,639,632
effective HSP length: 103
effective length of query: 502
effective length of database: 6,081,004
effective search space: 3052664008
effective search space used: 3052664008
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 62 (28.5 bits)