TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0214.10
         (74 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC205974 homologue to UP|Q94KS2 (Q94KS2) TGF-beta receptor-inter...    71  9e-14
TC205975 homologue to UP|Q94KS2 (Q94KS2) TGF-beta receptor-inter...    71  9e-14
TC227880 similar to UP|Q86UK7 (Q86UK7) Zinc finger protein 598, ...    40  3e-04

>TC205974 homologue to UP|Q94KS2 (Q94KS2) TGF-beta receptor-interacting
           protein 1, partial (57%)
          Length = 783

 Score = 71.2 bits (173), Expect = 9e-14
 Identities = 38/71 (53%), Positives = 48/71 (67%)
 Frame = +3

Query: 2   VLRGGQVASAVSTTDHHAGNFEAKFYDMILQEEFRDVKGHSGLINVMAFIMEERPALSDP 61
           V+ GGQ ASAV+TTDH AG FEAKF+D ILQEE   VKGH G IN +AF  + + + S  
Sbjct: 330 VIGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGK-SFSSG 506

Query: 62  VSDGHVLVQFY 72
             DG+V +  +
Sbjct: 507 GEDGYVRLHHF 539


>TC205975 homologue to UP|Q94KS2 (Q94KS2) TGF-beta receptor-interacting
           protein 1, partial (35%)
          Length = 546

 Score = 71.2 bits (173), Expect = 9e-14
 Identities = 38/71 (53%), Positives = 48/71 (67%)
 Frame = +1

Query: 2   VLRGGQVASAVSTTDHHAGNFEAKFYDMILQEEFRDVKGHSGLINVMAFIMEERPALSDP 61
           V+ GGQ ASAV+TTDH AG FEAKF+D ILQEE   VKGH G IN +AF  + + + S  
Sbjct: 109 VIGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGK-SFSSG 285

Query: 62  VSDGHVLVQFY 72
             DG+V +  +
Sbjct: 286 GEDGYVRLHHF 318


>TC227880 similar to UP|Q86UK7 (Q86UK7) Zinc finger protein 598, partial (3%)
          Length = 1079

 Score = 39.7 bits (91), Expect = 3e-04
 Identities = 19/26 (73%), Positives = 21/26 (80%)
 Frame = +2

Query: 49  AFIMEERPALSDPVSDGHVLVQFYGN 74
           A I+EE  ALS+P S GHVLVQFYGN
Sbjct: 539 AEILEETSALSNPGSGGHVLVQFYGN 616


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.320    0.137    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,421,536
Number of Sequences: 63676
Number of extensions: 17804
Number of successful extensions: 49
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of query: 74
length of database: 12,639,632
effective HSP length: 50
effective length of query: 24
effective length of database: 9,455,832
effective search space: 226939968
effective search space used: 226939968
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)