BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0212.11
(511 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC204439 UP|Q84VI4 (Q84VI4) Gag-pol polyprotein, complete 57 2e-08
TC204438 homologue to UP|Q84VH6 (Q84VH6) Gag-pol polyprotein, co... 57 3e-08
AI959950 55 6e-08
TC223792 weakly similar to UP|Q9FH39 (Q9FH39) Copia-type polypro... 53 3e-07
TC231899 similar to UP|Q850H7 (Q850H7) Gag-pol polyprotein (Frag... 52 8e-07
TC213888 similar to UP|Q9SFE1 (Q9SFE1) T26F17.17, partial (11%) 48 9e-06
TC225402 weakly similar to UP|Q6I923 (Q6I923) Copia-like retrotr... 48 1e-05
TC213365 similar to UP|Q6I8L6 (Q6I8L6) Reverse transcriptase (Fr... 45 1e-04
BG508993 42 7e-04
BU549979 40 0.002
BU550032 similar to GP|27901696|gb| gag-pol polyprotein {Vitis v... 38 0.009
TC234984 similar to UP|Q84LM4 (Q84LM4) Acylamino acid-releasing ... 35 0.080
BU548243 35 0.10
TC234402 weakly similar to GB|AAR24647.1|38603804|BT010869 At2g2... 34 0.14
BQ081067 weakly similar to GP|23495377|dbj orf490 {Oryza sativa ... 34 0.14
BG882494 weakly similar to GP|27901694|gb| gag-pol polyprotein {... 33 0.40
BE474381 similar to GP|21434|emb|CA ORF4 {Solanum tuberosum}, pa... 33 0.40
BU545438 32 0.68
AW201343 32 0.89
AW185460 31 1.5
>TC204439 UP|Q84VI4 (Q84VI4) Gag-pol polyprotein, complete
Length = 4731
Score = 57.4 bits (137), Expect = 2e-08
Identities = 30/107 (28%), Positives = 58/107 (54%)
Frame = +1
Query: 363 DFKKSASGYLIKFVGGVVALKSRLHRCIALSTFEAEFIDITEACKEFL*LKKLFQD*VLS 422
D +KS SG +++ S+ C++LST EAE+I +C + + +K++ ++ +
Sbjct: 4297 DDRKSTSGGCFYLGNNLISWFSKKQNCVSLSTAEAEYIAAGSSCSQLVWMKQMLKEYNVE 4476
Query: 423 RTNTCCFVIVKVRFILRKSPTFHSTSKHIDVRCHWIRDALIARLLEL 469
+ + + K+P HS +KHID+R H+IRD + +++ L
Sbjct: 4477 QDVMTLYCDNMSAINISKNPVQHSRTKHIDIRHHYIRDLVDDKVITL 4617
Score = 47.0 bits (110), Expect = 2e-05
Identities = 27/101 (26%), Positives = 51/101 (49%), Gaps = 4/101 (3%)
Frame = +1
Query: 7 MDVMKNEMKSWHDNCSFHLVKLPKGKKALENKWICMVKLESNSTSLRYKAILMVEDFRHG 66
++ M+ E++ + N + LV P+G + KWI K R KA L+ + +
Sbjct: 3241 INAMQEELEQFKRNEVWELVPRPEGTNVIGTKWIFKNKTNEEGVITRNKARLVAQGYTQI 3420
Query: 67 KSVDSNE----MVKMSFIEIVLSLVATLDLEVKQIDVKAAF 103
+ VD +E + ++ I ++L + L ++ Q+DVK+AF
Sbjct: 3421 EGVDFDETFAPVARLESIRLLLGVACILKFKLYQMDVKSAF 3543
>TC204438 homologue to UP|Q84VH6 (Q84VH6) Gag-pol polyprotein, complete
Length = 4734
Score = 56.6 bits (135), Expect = 3e-08
Identities = 30/107 (28%), Positives = 58/107 (54%)
Frame = +1
Query: 363 DFKKSASGYLIKFVGGVVALKSRLHRCIALSTFEAEFIDITEACKEFL*LKKLFQD*VLS 422
D +KS SG +++ S+ C++LST EAE+I +C + + +K++ ++ +
Sbjct: 4300 DDRKSTSGGCFYLGTNLISWFSKKQNCVSLSTAEAEYIAAGSSCSQLVWMKQMLKEYNVE 4479
Query: 423 RTNTCCFVIVKVRFILRKSPTFHSTSKHIDVRCHWIRDALIARLLEL 469
+ + + K+P HS +KHID+R H+IRD + +++ L
Sbjct: 4480 QDVMTLYCDNMSAINISKNPVQHSRTKHIDIRHHYIRDLVDDKVITL 4620
Score = 47.0 bits (110), Expect = 2e-05
Identities = 27/101 (26%), Positives = 51/101 (49%), Gaps = 4/101 (3%)
Frame = +1
Query: 7 MDVMKNEMKSWHDNCSFHLVKLPKGKKALENKWICMVKLESNSTSLRYKAILMVEDFRHG 66
++ M+ E++ + N + LV P+G + KWI K R KA L+ + +
Sbjct: 3244 INAMQEELEQFKRNEVWELVPRPEGTNVIGTKWIFKNKTNEEGVITRNKARLVAQGYTQI 3423
Query: 67 KSVDSNE----MVKMSFIEIVLSLVATLDLEVKQIDVKAAF 103
+ VD +E + ++ I ++L + L ++ Q+DVK+AF
Sbjct: 3424 EGVDFDETFAPVARLESIRLLLGVACILKFKLYQMDVKSAF 3546
>AI959950
Length = 466
Score = 55.5 bits (132), Expect = 6e-08
Identities = 33/101 (32%), Positives = 56/101 (54%), Gaps = 4/101 (3%)
Frame = -1
Query: 7 MDVMKNEMKSWHDNCSFHLVKLPKGKKALENKWICMVKLESNSTSLRYKAILMVEDFRHG 66
M M+ E+ + N LVKLPK KK + KWI KL+ + +RYKA L+ + +
Sbjct: 397 MKAMQEELDQFQKNNV*KLVKLPKRKKVVGVKWIFCNKLDEDGKVVRYKARLVAKGYSQQ 218
Query: 67 KSVDSNE----MVKMSFIEIVLSLVATLDLEVKQIDVKAAF 103
+ +D + + ++ I I+LS ++++ Q+DVK+AF
Sbjct: 217 EGIDYPKTFALVARLEVICILLSFATYSNMKLYQMDVKSAF 95
>TC223792 weakly similar to UP|Q9FH39 (Q9FH39) Copia-type polyprotein,
partial (7%)
Length = 804
Score = 53.1 bits (126), Expect = 3e-07
Identities = 35/101 (34%), Positives = 51/101 (49%), Gaps = 1/101 (0%)
Frame = +1
Query: 361 DNDFKKSASGYLIKFVGGVVALKSRLHRCIALSTFEAEFIDITEACKEFL*LKKLFQD*V 420
D + +KS GYL + VA S+ IALST EAE++ + + + + L ++
Sbjct: 256 DPEQEKSTGGYLFMYNDAPVA*SSKKQDVIALSTCEAEYVAASLGACQAVWMMNLLEELK 435
Query: 421 LSRTNTCCFVIVKVRFI-LRKSPTFHSTSKHIDVRCHWIRD 460
L +I I L K PT H SKHI++R H+IRD
Sbjct: 436 LRERKPVNLLIDNKSAINLAKHPTLHGRSKHIELRFHYIRD 558
>TC231899 similar to UP|Q850H7 (Q850H7) Gag-pol polyprotein (Fragment),
partial (30%)
Length = 687
Score = 51.6 bits (122), Expect = 8e-07
Identities = 27/102 (26%), Positives = 53/102 (51%), Gaps = 1/102 (0%)
Frame = +2
Query: 365 KKSASGYLIKFVGGVVALKSRLHRCIALSTFEAEFIDITEACKEFL*LKKLFQD*-VLSR 423
++S SGY + G +V+ KS+ +A S+ EAE+ + E + +K+ Q+
Sbjct: 62 RRSTSGYCVFIGGNLVSWKSKKQTVVARSSAEAEYRSMAMVTCELMWIKQFLQELRFCEE 241
Query: 424 TNTCCFVIVKVRFILRKSPTFHSTSKHIDVRCHWIRDALIAR 465
+ + + +P FH +KHI++ CH+IR+ L+++
Sbjct: 242 LQMKLYCDNQAALHIASNPVFHERTKHIEIDCHFIREKLLSK 367
>TC213888 similar to UP|Q9SFE1 (Q9SFE1) T26F17.17, partial (11%)
Length = 493
Score = 48.1 bits (113), Expect = 9e-06
Identities = 30/108 (27%), Positives = 52/108 (47%), Gaps = 1/108 (0%)
Frame = +3
Query: 363 DFKKSASGYLIKFVGGVVALKSRLHRCIALSTFEAEFIDITEACKEFL*LKKLFQD*VLS 422
D +KS +G++ S+ + LST EAE++ T + L+ L ++ +
Sbjct: 9 DDRKSTTGFVFFMGDTAFTWMSKKQPIVTLSTCEAEYVAATSCVCHAIWLRNLLKELKMP 188
Query: 423 RTNTCCFVIV-KVRFILRKSPTFHSTSKHIDVRCHWIRDALIARLLEL 469
+ + K L K+P FH SKHID R H+IR+ + + ++L
Sbjct: 189 QEEPMEICVDNKSALALAKNPVFHEKSKHIDTRYHFIRECIEKKEVKL 332
>TC225402 weakly similar to UP|Q6I923 (Q6I923) Copia-like retrotransposon
Hopscotch polyprotein, partial (7%)
Length = 1446
Score = 47.8 bits (112), Expect = 1e-05
Identities = 29/97 (29%), Positives = 48/97 (48%), Gaps = 3/97 (3%)
Frame = +2
Query: 367 SASGYLIKFVGGVVALKSRLHRCIALSTFEAEFIDITEACKEFL*LKKLFQD*VLSRTNT 426
S GY + +V KS +A S+ EAE+ +T A E + +K+L Q+ T
Sbjct: 44 STLGYCVSIGENLVLWKSNK*NVVARSSAEAEYKAMTVATCELIWIKQLLQELKFGSTQQ 223
Query: 427 ---CCFVIVKVRFILRKSPTFHSTSKHIDVRCHWIRD 460
CC + + +P FH +KHI++ CH++R+
Sbjct: 224 MKLCCDNQAALH--IASNPVFHERTKHIEIDCHFVRE 328
>TC213365 similar to UP|Q6I8L6 (Q6I8L6) Reverse transcriptase (Fragment),
partial (10%)
Length = 440
Score = 44.7 bits (104), Expect = 1e-04
Identities = 25/70 (35%), Positives = 38/70 (53%)
Frame = +3
Query: 390 IALSTFEAEFIDITEACKEFL*LKKLFQD*VLSRTNTCCFVIVKVRFILRKSPTFHSTSK 449
+ALST EA+++ +TEA KE + L+ L D +++ + K H +K
Sbjct: 9 VALSTTEAKYMALTEAAKEGIWLRGLINDLRINQEYANIYYDSLSAICFAKDQVHHDRTK 188
Query: 450 HIDVRCHWIR 459
HIDVR H+IR
Sbjct: 189 HIDVRYHFIR 218
>BG508993
Length = 374
Score = 42.0 bits (97), Expect = 7e-04
Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 1/95 (1%)
Frame = +1
Query: 361 DNDFKKSASGYLIKFVGGVVALKSRLHRCIALSTFEAEFIDITEACKEFL*LKKLFQD*- 419
D D +KS +G++ V S+ + L T EAE++ T + L++L ++
Sbjct: 88 DVDDRKSTTGFVFFMGDCVFTWSSKKQGIVTLFTCEAEYVAATSCTCHAIWLRRLLEELQ 267
Query: 420 VLSRTNTCCFVIVKVRFILRKSPTFHSTSKHIDVR 454
+L + +T +V + L K+ FH SKHID R
Sbjct: 268 LLQKESTKIYVDNRSAQELAKNSVFHERSKHIDTR 372
>BU549979
Length = 615
Score = 40.4 bits (93), Expect = 0.002
Identities = 31/103 (30%), Positives = 45/103 (43%), Gaps = 5/103 (4%)
Frame = -1
Query: 363 DFKKSASGYLIKFVGGVVALKSRLHRCIALSTFEAEFIDITEACKEFL*LKKLFQ----- 417
D ++S SGY+ GVV+ +S IA ST E EF+ EA + LK
Sbjct: 453 DSRRSTSGYIFMLADGVVSWRSSKQTLIATSTMEVEFVPCFEATSHGVWLKSFMSSLRVV 274
Query: 418 D*VLSRTNTCCFVIVKVRFILRKSPTFHSTSKHIDVRCHWIRD 460
D + C V + K+ + SKHID++ IR+
Sbjct: 273 DSISRPLKLYCDNFAAV--FMAKNNKSGNRSKHIDIKYLVIRE 151
>BU550032 similar to GP|27901696|gb| gag-pol polyprotein {Vitis vinifera},
partial (21%)
Length = 698
Score = 38.1 bits (87), Expect = 0.009
Identities = 23/89 (25%), Positives = 44/89 (48%), Gaps = 6/89 (6%)
Frame = -2
Query: 383 KSRLHRCIALSTFEAEFIDITEACKEFL*LKKLFQD*VLSRTNTCCFVIVKV------RF 436
KS+ +A + E E+ +T E + +K+ Q+ C V +K+
Sbjct: 697 KSKKQTVVA*XSAEVEY*SMTMVTCELMWIKQXLQE-----LRFCEVVQMKLYCDNQAAL 533
Query: 437 ILRKSPTFHSTSKHIDVRCHWIRDALIAR 465
+ +P FH +KHI++ CH+IR+ L+++
Sbjct: 532 HIASNPVFHERAKHIEIDCHFIREKLLSK 446
>TC234984 similar to UP|Q84LM4 (Q84LM4) Acylamino acid-releasing enzyme ,
partial (14%)
Length = 682
Score = 35.0 bits (79), Expect = 0.080
Identities = 18/50 (36%), Positives = 26/50 (52%)
Frame = +1
Query: 283 SLCICCW*FDVCNGVHKTRYSACCW*NQEMSNKSG*RALECCEIDFEVSL 332
+L C + VCNG++ TR+ CC + K L CCE+D +V L
Sbjct: 526 ALFFCSGLYYVCNGLYMTRHCLCCRSCE*TPIKPLKEVLACCEMDIKVYL 675
>BU548243
Length = 599
Score = 34.7 bits (78), Expect = 0.10
Identities = 23/109 (21%), Positives = 50/109 (45%)
Frame = -1
Query: 361 DNDFKKSASGYLIKFVGGVVALKSRLHRCIALSTFEAEFIDITEACKEFL*LKKLFQD*V 420
D D +S G I +++ SR + A S+ EAE+ I + E ++ L +
Sbjct: 569 DVDDHRSTLGSAIFLGPNLISWWSRKQQVTAQSSTEAEYRSIAQTSAELTWIQALLMELQ 390
Query: 421 LSRTNTCCFVIVKVRFILRKSPTFHSTSKHIDVRCHWIRDALIARLLEL 469
+ T K + + FHS +KH+++ ++ + ++++ L++
Sbjct: 389 IPFTPPVILCDNKSAVAIAHNLVFHSRTKHMEIDVFFVHEKVLSKQLQI 243
>TC234402 weakly similar to GB|AAR24647.1|38603804|BT010869 At2g23330
{Arabidopsis thaliana;} , partial (7%)
Length = 461
Score = 34.3 bits (77), Expect = 0.14
Identities = 11/28 (39%), Positives = 21/28 (74%)
Frame = +1
Query: 438 LRKSPTFHSTSKHIDVRCHWIRDALIAR 465
+ +P FH +KHI+V C+++R+ L+A+
Sbjct: 94 IASNPVFHERTKHIEVACYFVREKLMAK 177
>BQ081067 weakly similar to GP|23495377|dbj orf490 {Oryza sativa (japonica
cultivar-group)}, partial (18%)
Length = 430
Score = 34.3 bits (77), Expect = 0.14
Identities = 18/64 (28%), Positives = 32/64 (49%)
Frame = +1
Query: 10 MKNEMKSWHDNCSFHLVKLPKGKKALENKWICMVKLESNSTSLRYKAILMVEDFRHGKSV 69
M+ + + +N + L LP GK A++ KW+ +K T RY++ L+ + F
Sbjct: 82 MQADFDALMENKTLTLTSLPSGKAAIDCKWVFRIKENLYGTLNRYRSRLVAKGFHLKFGC 261
Query: 70 DSNE 73
D +E
Sbjct: 262 DYSE 273
>BG882494 weakly similar to GP|27901694|gb| gag-pol polyprotein {Vitis
vinifera}, partial (20%)
Length = 400
Score = 32.7 bits (73), Expect = 0.40
Identities = 19/96 (19%), Positives = 42/96 (42%)
Frame = -2
Query: 365 KKSASGYLIKFVGGVVALKSRLHRCIALSTFEAEFIDITEACKEFL*LKKLFQD*VLSRT 424
K+ Y + G +++ S+ H + S + E+ + C + + K+L + T
Sbjct: 288 KRPTCRYCVLIRGKLISWNSKKHNVVTRSRTKVEYRAMALIC-QLIWFKQLRKQLQFEDT 112
Query: 425 NTCCFVIVKVRFILRKSPTFHSTSKHIDVRCHWIRD 460
+ + S F + +KHI++ CH++R+
Sbjct: 111 MQMTLICDNQAALYIASNQFSTRTKHIEINCHFVRE 4
>BE474381 similar to GP|21434|emb|CA ORF4 {Solanum tuberosum}, partial (20%)
Length = 406
Score = 32.7 bits (73), Expect = 0.40
Identities = 21/54 (38%), Positives = 30/54 (54%)
Frame = +3
Query: 365 KKSASGYLIKFVGGVVALKSRLHRCIALSTFEAEFIDITEACKEFL*LKKLFQD 418
++S SGY FVGG + S+ +A S+ EAEF + E L +KKL Q+
Sbjct: 192 RRSTSGYCT-FVGGNLVS*SKKQSVVARSSAEAEFRALAHGICETLWVKKLLQE 350
>BU545438
Length = 579
Score = 32.0 bits (71), Expect = 0.68
Identities = 12/37 (32%), Positives = 24/37 (64%)
Frame = -1
Query: 433 KVRFILRKSPTFHSTSKHIDVRCHWIRDALIARLLEL 469
K + K+P +H+ +KHI ++ H+IR+A + ++L
Sbjct: 477 KSAIAMAKNPVYHNRTKHIAIKYHFIREAEATKEIKL 367
>AW201343
Length = 396
Score = 31.6 bits (70), Expect = 0.89
Identities = 14/36 (38%), Positives = 24/36 (65%)
Frame = -3
Query: 365 KKSASGYLIKFVGGVVALKSRLHRCIALSTFEAEFI 400
K + SGY++KF+ ++ S+ +ALST EA++I
Sbjct: 166 KNNTSGYILKFLEAPISWCSKKQPVVALSTCEAKYI 59
>AW185460
Length = 411
Score = 30.8 bits (68), Expect = 1.5
Identities = 15/42 (35%), Positives = 22/42 (51%)
Frame = +2
Query: 363 DFKKSASGYLIKFVGGVVALKSRLHRCIALSTFEAEFIDITE 404
D KS SGY G+ + S+ +A ST EAE++ + E
Sbjct: 284 DDMKSTSGYAFSLGSGMFSWASKKQATVAQSTAEAEYVAVAE 409
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.367 0.164 0.593
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,934,184
Number of Sequences: 63676
Number of extensions: 289482
Number of successful extensions: 4735
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 2642
Number of HSP's successfully gapped in prelim test: 169
Number of HSP's that attempted gapping in prelim test: 2029
Number of HSP's gapped (non-prelim): 2917
length of query: 511
length of database: 12,639,632
effective HSP length: 101
effective length of query: 410
effective length of database: 6,208,356
effective search space: 2545425960
effective search space used: 2545425960
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 14 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 36 (21.7 bits)
S2: 61 (28.1 bits)
Lotus: description of TM0212.11