BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0212.10
(115 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC227182 177 5e-46
TC227183 170 8e-44
BM086115 145 4e-36
TC231599 125 6e-32
BI426431 weakly similar to GP|3643088|gb|A protein phosphatase-2... 27 1.1
AI437838 homologue to PIR|E84541|E845 amidophosphoribosyltransfe... 27 1.1
AI988139 27 1.4
TC204876 homologue to UP|UCR2_TOBAC (P51132) Ubiquinol-cytochrom... 27 1.4
TC204800 27 1.4
TC203917 similar to UP|RL4_PRUAR (Q9XF97) 60S ribosomal protein ... 27 1.8
TC223883 similar to UP|YB1E_SCHPO (P87179) Serine-rich protein C... 27 1.8
TC230903 similar to UP|Q9FJM0 (Q9FJM0) GTP binding protein-like,... 26 2.4
TC231517 similar to UP|O82411 (O82411) FUSCA3, partial (43%) 26 3.1
CN472223 26 3.1
TC231542 similar to UP|Q8LBK2 (Q8LBK2) BCS1 protein-like protein... 26 3.1
TC214232 weakly similar to UP|ATF5_HUMAN (Q9Y2D1) Cyclic-AMP-dep... 25 4.1
BG791140 25 5.4
TC232400 weakly similar to UP|Q8W2K5 (Q8W2K5) Phragmoplastin-int... 25 7.0
TC220541 similar to UP|Q6NKN2 (Q6NKN2) At3g23540, partial (15%) 25 7.0
TC216641 similar to UP|P93697 (P93697) CPRD12 protein, partial (... 24 9.1
>TC227182
Length = 676
Score = 177 bits (450), Expect = 5e-46
Identities = 90/117 (76%), Positives = 101/117 (85%), Gaps = 2/117 (1%)
Frame = +1
Query: 1 MLRSFTTRR-YERLGKETASSALLQEGFKRSTSLPSRASSSARKMA-HATFGNINLQRNP 58
M RS TTRR YERLGKE+A++ALL EGFKRSTSLPS S+S+RKMA +T+G INL+RNP
Sbjct: 142 MFRSMTTRRGYERLGKESATTALLHEGFKRSTSLPSWGSNSSRKMALGSTYGEINLKRNP 321
Query: 59 TKKANNSSKSTHPLFSFLDFRRKKKTTARPEFTRYLEYLKEGGMWDLNSNKPVIHYK 115
TKK NNS K +HPL SFL RRKKKTTARPEF RYLEYLKEGGMWDLNSNKPV++YK
Sbjct: 322 TKKGNNSDKKSHPLLSFLALRRKKKTTARPEFARYLEYLKEGGMWDLNSNKPVMYYK 492
>TC227183
Length = 778
Score = 170 bits (431), Expect = 8e-44
Identities = 88/118 (74%), Positives = 101/118 (85%), Gaps = 3/118 (2%)
Frame = -2
Query: 1 MLRSFTTRR-YERLGKETASSALLQEGFKRSTSLPSRASSSARKMA-HATFGNINLQRNP 58
M RS TTRR YERLGKE+A++ALL EGFKRSTSLPS S+S+RKMA +T+G INL+RNP
Sbjct: 645 MFRSMTTRRGYERLGKESATTALLHEGFKRSTSLPSWGSNSSRKMALGSTYGEINLKRNP 466
Query: 59 TKKANNSS-KSTHPLFSFLDFRRKKKTTARPEFTRYLEYLKEGGMWDLNSNKPVIHYK 115
TKK NN+S K +HPL SFL RRKKKTTARPEF RYLEYLKEGGMWD NSNKPV++Y+
Sbjct: 465 TKKGNNNSDKKSHPLLSFLALRRKKKTTARPEFARYLEYLKEGGMWDFNSNKPVMYYE 292
>BM086115
Length = 427
Score = 145 bits (365), Expect = 4e-36
Identities = 78/121 (64%), Positives = 88/121 (72%), Gaps = 6/121 (4%)
Frame = +2
Query: 1 MLRSFTTR----RYERLGKETASSALLQEGFKRSTSLPSRASSSARKMAHATFGNINLQR 56
M RS +TR +YERL KE A + E F+RSTSLPSRA S TF +INLQR
Sbjct: 62 MFRSTSTRGGPSKYERLEKELADNGTSNEEFERSTSLPSRAMGS-------TFRDINLQR 220
Query: 57 NPTKKANNS--SKSTHPLFSFLDFRRKKKTTARPEFTRYLEYLKEGGMWDLNSNKPVIHY 114
NPTK AN+ K +HPLFSF D RRKKKTTARPEF RYLEY+KEGGMWDLNSNKPV++Y
Sbjct: 221 NPTKNANSKPKEKKSHPLFSFFDLRRKKKTTARPEFARYLEYVKEGGMWDLNSNKPVMYY 400
Query: 115 K 115
K
Sbjct: 401 K 403
>TC231599
Length = 640
Score = 125 bits (313), Expect(2) = 6e-32
Identities = 70/104 (67%), Positives = 80/104 (76%), Gaps = 4/104 (3%)
Frame = -1
Query: 3 RSFTT-RRYERLGKETASSALLQEGFKRSTSLPSRASSSARKMA-HATFGNINLQRNPTK 60
RS TT R YE LGKE+A++AL EGFKRSTSLPS S+S+RKMA + +G+IN +RNPTK
Sbjct: 382 RSMTTWRGYEILGKESATTAL*HEGFKRSTSLPSHGSNSSRKMALDSNYGDINQKRNPTK 203
Query: 61 KA--NNSSKSTHPLFSFLDFRRKKKTTARPEFTRYLEYLKEGGM 102
K NN K +HPL SFL R KKKTTAR EF RYLEYLKEGGM
Sbjct: 202 KVSDNNRDKKSHPLVSFLALRWKKKTTARSEFARYLEYLKEGGM 71
Score = 26.9 bits (58), Expect(2) = 6e-32
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = -2
Query: 98 KEGGMWDLNSNKPV 111
KE MWDLNSN+P+
Sbjct: 81 KEACMWDLNSNQPL 40
>BI426431 weakly similar to GP|3643088|gb|A protein phosphatase-2C; PP2C
{Mesembryanthemum crystallinum}, partial (10%)
Length = 420
Score = 27.3 bits (59), Expect = 1.1
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -3
Query: 44 MAHATFGNINLQRNPTKKANNSSKSTHPLFSFL 76
M T G + +R ++ N +++THPL SFL
Sbjct: 379 MIGETHGYL*SKRKKVEQTNRKTEATHPLISFL 281
>AI437838 homologue to PIR|E84541|E845 amidophosphoribosyltransferase
[imported] - Arabidopsis thaliana, partial (13%)
Length = 434
Score = 27.3 bits (59), Expect = 1.1
Identities = 21/64 (32%), Positives = 31/64 (47%)
Frame = +1
Query: 6 TTRRYERLGKETASSALLQEGFKRSTSLPSRASSSARKMAHATFGNINLQRNPTKKANNS 65
TTR R +A +A L+ + S +LPS SS A K A + + NP+ +S
Sbjct: 223 TTRSRARSAAWSAYTATLRP--RASATLPSTRSSIAAKKAPESSPSTTTSSNPSPALASS 396
Query: 66 SKST 69
KS+
Sbjct: 397 PKSS 408
>AI988139
Length = 484
Score = 26.9 bits (58), Expect = 1.4
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -3
Query: 81 KKKTTARPEFTRYLEYLKEGGMWDLNSNKPVIHYK 115
K + T PEF R + ++K+G L K + HYK
Sbjct: 206 KNEMTPPPEFFRIVGHIKKGMDKFLKIKKTITHYK 102
>TC204876 homologue to UP|UCR2_TOBAC (P51132) Ubiquinol-cytochrome c
reductase iron-sulfur subunit 2, mitochondrial precursor
(Rieske iron-sulfur protein 2) (RISP2) , partial (26%)
Length = 483
Score = 26.9 bits (58), Expect = 1.4
Identities = 20/64 (31%), Positives = 30/64 (46%)
Frame = +1
Query: 15 KETASSALLQEGFKRSTSLPSRASSSARKMAHATFGNINLQRNPTKKANNSSKSTHPLFS 74
K+ +L+ +R +SL +SSS + HA ++ RN S S+HPLF
Sbjct: 43 KKKKKKKMLRVAARRLSSL---SSSSPWRPNHAASAYVS--RNAVVDDRRSDPSSHPLFP 207
Query: 75 FLDF 78
F F
Sbjct: 208 FRGF 219
>TC204800
Length = 1582
Score = 26.9 bits (58), Expect = 1.4
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +3
Query: 81 KKKTTARPEFTRYLEYLKEGGMWDLNSNKPVIHYK 115
K + T PEF R + ++K+G L K + HYK
Sbjct: 1377 KNEMTPPPEFFRIVGHIKKGMDKFLKIKKTITHYK 1481
>TC203917 similar to UP|RL4_PRUAR (Q9XF97) 60S ribosomal protein L4 (L1),
partial (35%)
Length = 477
Score = 26.6 bits (57), Expect = 1.8
Identities = 15/42 (35%), Positives = 21/42 (49%)
Frame = +3
Query: 29 RSTSLPSRASSSARKMAHATFGNINLQRNPTKKANNSSKSTH 70
RS+ L + ASS +R ++ RNP K + S KS H
Sbjct: 15 RSSRLAATASSPSRNSPSSSATLSKASRNPKKPSKFSRKSAH 140
>TC223883 similar to UP|YB1E_SCHPO (P87179) Serine-rich protein C30B4.01c
precursor, partial (7%)
Length = 682
Score = 26.6 bits (57), Expect = 1.8
Identities = 19/56 (33%), Positives = 30/56 (52%), Gaps = 6/56 (10%)
Frame = -2
Query: 30 STSLPSRASSSARKMAHATFGNINLQRNPTKKANNSSKST------HPLFSFLDFR 79
S SLPS ASSS+ ++ ++F + P +SS S+ H LF+F +F+
Sbjct: 249 SLSLPSAASSSSSPLSSSSFSS-----KPKLACWHSSPSSFMACL*HSLFNFSNFK 97
>TC230903 similar to UP|Q9FJM0 (Q9FJM0) GTP binding protein-like, partial
(11%)
Length = 506
Score = 26.2 bits (56), Expect = 2.4
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = +2
Query: 28 KRSTSLPSRASSSARKMAHATFGNINLQRNPTKKANNSSK 67
KR+ SLP RAS++ R+ A ++ L R + N +SK
Sbjct: 215 KRNASLPDRASAAQRRTASR---SVTLCRRRKQSNNEASK 325
>TC231517 similar to UP|O82411 (O82411) FUSCA3, partial (43%)
Length = 967
Score = 25.8 bits (55), Expect = 3.1
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = -1
Query: 32 SLPSRASSSARKMAHATFGNINLQRNPTKKANNS 65
++PS S + RK + A FGNI L R T NS
Sbjct: 178 TIPSLDSRAGRKASAAFFGNIILLRELTSLFFNS 77
>CN472223
Length = 430
Score = 25.8 bits (55), Expect = 3.1
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = -2
Query: 32 SLPSRASSSARKMAHATFGNINLQRNPTKKANNS 65
++PS S + RK + A FGNI L R T NS
Sbjct: 282 TIPSLDSRAGRKASAAFFGNIILLRELTSLFFNS 181
>TC231542 similar to UP|Q8LBK2 (Q8LBK2) BCS1 protein-like protein, partial
(34%)
Length = 1025
Score = 25.8 bits (55), Expect = 3.1
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Frame = +1
Query: 55 QRNPTKKANNSSKSTH---PLFSFLDFRRKKKTTARPEFTRYLEYLKE 99
Q P + A KS+H L +DF RKKK T + E + + KE
Sbjct: 562 QVTPAEVAEQLLKSSHIETSLEQLIDFMRKKKETQKLEAKKKEQEAKE 705
>TC214232 weakly similar to UP|ATF5_HUMAN (Q9Y2D1) Cyclic-AMP-dependent
transcription factor ATF-5 (Activating transcription
factor 5) (Transcription factor ATFx), partial (8%)
Length = 1283
Score = 25.4 bits (54), Expect = 4.1
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 7/60 (11%)
Frame = +1
Query: 36 RASSSARKMAHATFGNINLQRNPTKKANNSSKSTHPLFS-------FLDFRRKKKTTARP 88
RAS S++K A + + PT+ N+S+ S P S F K T++RP
Sbjct: 289 RASCSSKKTASTAATSASSPSAPTRSENSSTTSAAPSSSPASSTSKFAPASTPKTTSSRP 468
>BG791140
Length = 423
Score = 25.0 bits (53), Expect = 5.4
Identities = 11/27 (40%), Positives = 16/27 (58%)
Frame = -3
Query: 32 SLPSRASSSARKMAHATFGNINLQRNP 58
SL R + A+ +AH +F N N +NP
Sbjct: 352 SLTPRQNQKAKFLAHTSFKNQNKAQNP 272
>TC232400 weakly similar to UP|Q8W2K5 (Q8W2K5) Phragmoplastin-interacting
protein PHIP1, partial (8%)
Length = 621
Score = 24.6 bits (52), Expect = 7.0
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +1
Query: 62 ANNSSKSTHPLFSFLDFRRKKKTTARPEFT 91
+ NSS HP L R K+ + RP FT
Sbjct: 100 SQNSSGLCHP*SQILQKREAKEASIRPTFT 189
>TC220541 similar to UP|Q6NKN2 (Q6NKN2) At3g23540, partial (15%)
Length = 1191
Score = 24.6 bits (52), Expect = 7.0
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +1
Query: 26 GFKRSTSLPSRASSSARKMAHATFGNINLQRNP 58
G RS S S SSS ++H T + + RNP
Sbjct: 913 GSARSDSSASLQSSSETDVSHNTKATVTVVRNP 1011
>TC216641 similar to UP|P93697 (P93697) CPRD12 protein, partial (74%)
Length = 1103
Score = 24.3 bits (51), Expect = 9.1
Identities = 9/19 (47%), Positives = 12/19 (62%)
Frame = +2
Query: 87 RPEFTRYLEYLKEGGMWDL 105
RP+F RY+ LK +W L
Sbjct: 890 RPKFVRYIXTLKXAYLWGL 946
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.315 0.127 0.360
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,474,410
Number of Sequences: 63676
Number of extensions: 52074
Number of successful extensions: 412
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 405
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 405
length of query: 115
length of database: 12,639,632
effective HSP length: 91
effective length of query: 24
effective length of database: 6,845,116
effective search space: 164282784
effective search space used: 164282784
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)
Lotus: description of TM0212.10