BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0211.20
(162 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC217320 homologue to UP|Q9M378 (Q9M378) TATA box binding protei... 95 1e-22
TC229357 weakly similar to UP|Q8VDZ1 (Q8VDZ1) Hells protein, par... 56 9e-09
TC208491 similar to UP|Q7XBI0 (Q7XBI0) Swi2/Snf2-related protein... 55 1e-08
CO979327 54 2e-08
CO985811 54 3e-08
TC210166 similar to UP|Q7XJP0 (Q7XJP0) SNF2/SWI2 family global t... 46 7e-06
TC228720 weakly similar to UP|RAD5_YEAST (P32849) DNA repair pro... 44 3e-05
TC228853 similar to UP|O04082 (O04082) Transcription factor RUSH... 44 3e-05
TC228722 weakly similar to UP|RAD5_YEAST (P32849) DNA repair pro... 43 6e-05
TC231761 similar to UP|O23055 (O23055) YUP8H12.27 protein, parti... 43 8e-05
CO985318 32 0.10
BE800402 similar to PIR|T47587|T47 TATA box binding protein (TBP... 32 0.17
BU545741 29 1.1
TC229477 similar to UP|Q9M1P3 (Q9M1P3) Protein kinase-like prote... 28 1.5
AW306335 similar to SP|Q9SFU1|R1AA_ 60S ribosomal protein L13a-1... 28 1.9
TC214852 weakly similar to UP|STO_ARATH (Q96288) Salt-tolerance ... 27 4.3
BF067053 27 4.3
TC233288 26 7.3
TC222636 weakly similar to UP|Q6UJL0 (Q6UJL0) NADH dehydrogenase... 26 9.5
TC231542 similar to UP|Q8LBK2 (Q8LBK2) BCS1 protein-like protein... 26 9.5
>TC217320 homologue to UP|Q9M378 (Q9M378) TATA box binding protein (TBP)
associated factor (TAF)-like protein, partial (6%)
Length = 947
Score = 95.1 bits (235), Expect(2) = 1e-22
Identities = 57/105 (54%), Positives = 65/105 (61%), Gaps = 25/105 (23%)
Frame = +2
Query: 20 VEHDRNSMRDHQAMDKARRLGQEKVVNVHRLIMRDTLEEQVMSKERFEVSVANAANNLRL 79
VEHD N MRDHQAMD+A RLGQ+KVVNVHRLIMR TLEE+VMS +RF+VSVANA N
Sbjct: 2 VEHDWNPMRDHQAMDRAHRLGQKKVVNVHRLIMRGTLEEKVMSLQRFKVSVANAVINSEN 181
Query: 80 LS-------------------------VKSSVDHSDGVTELVGSG 99
S VKS ++SDG +LVGSG
Sbjct: 182 ASMKTMNTDQLLDLFASAETSKKGASVVKSPENNSDGDAKLVGSG 316
Score = 27.3 bits (59), Expect(2) = 1e-22
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +3
Query: 99 GDWWIYETNHIIQMNPIWIKSWQSLM 124
GDW Y TNH IQ + I + Q LM
Sbjct: 339 GDWRSYGTNHSIQRSTI*VSF*QGLM 416
>TC229357 weakly similar to UP|Q8VDZ1 (Q8VDZ1) Hells protein, partial (34%)
Length = 1007
Score = 55.8 bits (133), Expect = 9e-09
Identities = 26/56 (46%), Positives = 37/56 (65%)
Frame = +2
Query: 5 GGFGMNLTSADTLVFVEHDRNSMRDHQAMDKARRLGQEKVVNVHRLIMRDTLEEQV 60
GG G+NLT ADT+V + D N D QA D+ R+GQ K V ++RL+ + T++E V
Sbjct: 332 GGQGLNLTGADTVVIHDMDFNPQIDRQAEDRCHRIGQTKPVTIYRLVTKGTVDENV 499
>TC208491 similar to UP|Q7XBI0 (Q7XBI0) Swi2/Snf2-related protein DDM1,
partial (22%)
Length = 839
Score = 55.5 bits (132), Expect = 1e-08
Identities = 25/59 (42%), Positives = 39/59 (65%)
Frame = +2
Query: 5 GGFGMNLTSADTLVFVEHDRNSMRDHQAMDKARRLGQEKVVNVHRLIMRDTLEEQVMSK 63
GG G+NLT+ADT + + D N D QAMD+ R+GQ K V+V+RL ++E +++ +
Sbjct: 104 GGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLSTAQSIEGRMLKR 280
>CO979327
Length = 868
Score = 54.3 bits (129), Expect = 2e-08
Identities = 25/59 (42%), Positives = 38/59 (64%)
Frame = -1
Query: 5 GGFGMNLTSADTLVFVEHDRNSMRDHQAMDKARRLGQEKVVNVHRLIMRDTLEEQVMSK 63
GG G+NLT ADT + + D N D QAMD+ R+GQ K V+V+RL ++E +++ +
Sbjct: 757 GGLGINLTVADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLSTAQSIEGRMLKR 581
>CO985811
Length = 713
Score = 53.9 bits (128), Expect = 3e-08
Identities = 29/71 (40%), Positives = 42/71 (58%)
Frame = -3
Query: 2 IHVGGFGMNLTSADTLVFVEHDRNSMRDHQAMDKARRLGQEKVVNVHRLIMRDTLEEQVM 61
I GG G+NL +ADT++ + D N D QA +A R+GQ++ V V R T+EEQV
Sbjct: 255 IRAGGVGVNLQAADTVILFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVR 76
Query: 62 SKERFEVSVAN 72
+ ++ VAN
Sbjct: 75 ASAEHKLGVAN 43
>TC210166 similar to UP|Q7XJP0 (Q7XJP0) SNF2/SWI2 family global transcription
factor, partial (7%)
Length = 946
Score = 46.2 bits (108), Expect = 7e-06
Identities = 23/64 (35%), Positives = 35/64 (53%)
Frame = +1
Query: 2 IHVGGFGMNLTSADTLVFVEHDRNSMRDHQAMDKARRLGQEKVVNVHRLIMRDTLEEQVM 61
I G G+NL A +V VE N + QA+ + R+GQ+ +HR I++DT+EE +
Sbjct: 97 IQHGANGLNLLEAQHVVLVEPLLNPAAEAQAISRVHRIGQKNKTLIHRFIVKDTVEESIY 276
Query: 62 SKER 65
R
Sbjct: 277 KLNR 288
>TC228720 weakly similar to UP|RAD5_YEAST (P32849) DNA repair protein RAD5,
partial (4%)
Length = 736
Score = 43.9 bits (102), Expect = 3e-05
Identities = 23/73 (31%), Positives = 46/73 (62%), Gaps = 1/73 (1%)
Frame = +3
Query: 2 IHVGGFGMNLTSADTLVFVEHDRNSMRDHQAMDKARRLGQEKVVNVHRLIMRDTLEEQVM 61
+ G+NL A ++ ++ N + QA+D+A R+GQ + V V RL +RDT+E++++
Sbjct: 75 LKAASLGLNLVVACHVLMLDLWWNPTTEDQAIDRAHRIGQTRPVTVLRLTVRDTVEDRIL 254
Query: 62 S-KERFEVSVANA 73
+ +++ + VA+A
Sbjct: 255 ALQQKKRMMVASA 293
>TC228853 similar to UP|O04082 (O04082) Transcription factor RUSH-1alpha
isolog; 18684-24052, partial (24%)
Length = 1393
Score = 43.9 bits (102), Expect = 3e-05
Identities = 22/73 (30%), Positives = 46/73 (62%), Gaps = 1/73 (1%)
Frame = +2
Query: 2 IHVGGFGMNLTSADTLVFVEHDRNSMRDHQAMDKARRLGQEKVVNVHRLIMRDTLEEQVM 61
+ G+N+ +A ++ ++ N + QA+D+A R+GQ + V V RL +RDT+E++++
Sbjct: 887 LKAASLGLNMVAACHVLMLDLWWNPTTEDQAIDRAHRIGQTRPVTVLRLTVRDTVEDRIL 1066
Query: 62 S-KERFEVSVANA 73
+ +++ VA+A
Sbjct: 1067ALQQKKRTMVASA 1105
>TC228722 weakly similar to UP|RAD5_YEAST (P32849) DNA repair protein RAD5,
partial (4%)
Length = 1293
Score = 43.1 bits (100), Expect = 6e-05
Identities = 23/73 (31%), Positives = 44/73 (59%), Gaps = 1/73 (1%)
Frame = +3
Query: 2 IHVGGFGMNLTSADTLVFVEHDRNSMRDHQAMDKARRLGQEKVVNVHRLIMRDTLEEQVM 61
+ G+NL A ++ ++ N + QA+D+A R+GQ + V V RL +RDT+E++++
Sbjct: 687 LKAASLGLNLVVACHVLMLDLWWNPTTEDQAIDRAHRIGQTRPVTVLRLTVRDTVEDRIL 866
Query: 62 S-KERFEVSVANA 73
+++ VA+A
Sbjct: 867 DLQQKKRTMVASA 905
>TC231761 similar to UP|O23055 (O23055) YUP8H12.27 protein, partial (14%)
Length = 836
Score = 42.7 bits (99), Expect = 8e-05
Identities = 22/85 (25%), Positives = 46/85 (53%), Gaps = 5/85 (5%)
Frame = +2
Query: 2 IHVGGFGMNLTSADTLVFVEHDRNSMRDHQAMDKARRLGQEKVVNVHRLIMRDTLEEQVM 61
+ GG +NLT A + ++ N + QA D+ R+GQ K + + R ++ +T+EE+++
Sbjct: 353 LKAGGVALNLTVASHVFLMDPWWNPAVERQAQDRIHRIGQYKPIRIVRFVIENTIEERIL 532
Query: 62 SKER-----FEVSVANAANNLRLLS 81
+ FE ++ +++ L L+
Sbjct: 533 KLQEKKELVFEGTIGGSSDALGKLT 607
>CO985318
Length = 790
Score = 32.3 bits (72), Expect = 0.10
Identities = 21/66 (31%), Positives = 32/66 (47%), Gaps = 3/66 (4%)
Frame = -2
Query: 29 DHQAMDKARRLGQEKVVNVHRLIMRDTLEEQVMSKERFEVSVANAANNLRLLSVK---SS 85
+ Q + +A R+G + + V L MR T+EEQ++ A+N R +K S
Sbjct: 582 EEQVISRAHRMGASRPIYVETLAMRGTIEEQML-------DFLQDADNFRRSPIKDATES 424
Query: 86 VDHSDG 91
VD S G
Sbjct: 423 VDDSGG 406
>BE800402 similar to PIR|T47587|T47 TATA box binding protein (TBP) associated
factor (TAF)-like protein - Arabidopsis thaliana,
partial (1%)
Length = 184
Score = 31.6 bits (70), Expect = 0.17
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = +2
Query: 98 SGDWWIYETNHIIQMNPIWIKSWQSLM 124
SGDW Y TNH IQ + I + +Q LM
Sbjct: 104 SGDWRSYGTNHNIQRSTICVNFYQGLM 184
>BU545741
Length = 514
Score = 28.9 bits (63), Expect = 1.1
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = -1
Query: 5 GGFGMNLTSADTLVFVEHDRNSMRDHQAMDKARRLGQEK 43
GG G+NLT+A + ++ N + QA+ + R+GQ +
Sbjct: 391 GGVGLNLTAASNVFIMDPW*NPAVEEQAIMRIHRIGQNR 275
>TC229477 similar to UP|Q9M1P3 (Q9M1P3) Protein kinase-like protein, partial
(64%)
Length = 1182
Score = 28.5 bits (62), Expect = 1.5
Identities = 12/31 (38%), Positives = 18/31 (57%)
Frame = +3
Query: 115 IWIKSWQSLMLYTFHPRKRLQILTLALRKVR 145
+W++ W SL HPR+R L+ LR +R
Sbjct: 741 LWLEPWSSLRNPPCHPRQRTSSLSYWLRTLR 833
>AW306335 similar to SP|Q9SFU1|R1AA_ 60S ribosomal protein L13a-1. [Mouse-ear
cress] {Arabidopsis thaliana}, partial (15%)
Length = 228
Score = 28.1 bits (61), Expect = 1.9
Identities = 13/44 (29%), Positives = 19/44 (42%)
Frame = +2
Query: 101 WWIYETNHIIQMNPIWIKSWQSLMLYTFHPRKRLQILTLALRKV 144
WW T ++ P W KS+ Y + P R+ LRK+
Sbjct: 11 WWTLSTTCLVL*RPSWPKSF*MGTTYLWFPSNRISSPAFWLRKI 142
>TC214852 weakly similar to UP|STO_ARATH (Q96288) Salt-tolerance protein,
partial (10%)
Length = 729
Score = 26.9 bits (58), Expect = 4.3
Identities = 12/44 (27%), Positives = 23/44 (52%)
Frame = +3
Query: 107 NHIIQMNPIWIKSWQSLMLYTFHPRKRLQILTLALRKVRFDRLV 150
NH+ + N ++SW L ++ F L+ L L+ + F +L+
Sbjct: 156 NHLRKRNLCSLESWNGLQMWVFSANNLLRKPWLQLKYLSFPKLI 287
>BF067053
Length = 361
Score = 26.9 bits (58), Expect = 4.3
Identities = 10/22 (45%), Positives = 15/22 (67%)
Frame = -3
Query: 102 WIYETNHIIQMNPIWIKSWQSL 123
W Y ++H++ + PIW SW SL
Sbjct: 308 WFYFSDHLV-IKPIWKISWDSL 246
>TC233288
Length = 835
Score = 26.2 bits (56), Expect = 7.3
Identities = 11/32 (34%), Positives = 14/32 (43%)
Frame = -3
Query: 85 SVDHSDGVTELVGSGDWWIYETNHIIQMNPIW 116
S H V V G W + NH I ++P W
Sbjct: 437 SKQHIWNVDSHVAFGQWKVIRANHDIWLHPFW 342
>TC222636 weakly similar to UP|Q6UJL0 (Q6UJL0) NADH dehydrogenase subunit 2,
partial (9%)
Length = 768
Score = 25.8 bits (55), Expect = 9.5
Identities = 12/39 (30%), Positives = 22/39 (55%)
Frame = -3
Query: 72 NAANNLRLLSVKSSVDHSDGVTELVGSGDWWIYETNHII 110
N + + + S + D ++ T++ GS W+I +NHII
Sbjct: 580 NVSEDTFIFSELQNKDANEFQTKI*GSFPWFIMSSNHII 464
>TC231542 similar to UP|Q8LBK2 (Q8LBK2) BCS1 protein-like protein, partial
(34%)
Length = 1025
Score = 25.8 bits (55), Expect = 9.5
Identities = 13/54 (24%), Positives = 27/54 (49%)
Frame = +1
Query: 65 RFEVSVANAANNLRLLSVKSSVDHSDGVTELVGSGDWWIYETNHIIQMNPIWIK 118
R E A+ NN R +++ ++ DG+ G ++ TNH +++P ++
Sbjct: 268 RAEARAASGHNNDRQVTLSGLLNFIDGLWSSCGDERIIVFTTNHKDKLDPALLR 429
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.326 0.139 0.417
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,178,961
Number of Sequences: 63676
Number of extensions: 76077
Number of successful extensions: 539
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 538
length of query: 162
length of database: 12,639,632
effective HSP length: 90
effective length of query: 72
effective length of database: 6,908,792
effective search space: 497433024
effective search space used: 497433024
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.8 bits)
Lotus: description of TM0211.20