BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0211.11
(298 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC205624 similar to GB|CAD90763.1|47825426|ATH560718 lumenal pro... 488 e-138
TC205625 similar to GB|CAD90763.1|47825426|ATH560718 lumenal pro... 253 1e-67
TC205623 similar to GB|CAD90763.1|47825426|ATH560718 lumenal pro... 232 1e-61
AW568998 204 3e-53
TC219143 similar to UP|Q9FJJ8 (Q9FJJ8) Arabidopsis thaliana geno... 37 0.011
TC223815 similar to GB|AAQ65176.1|34365729|BT010553 At3g28670 {A... 35 0.053
TC228785 weakly similar to GB|AAP42749.1|30984572|BT008736 At3g5... 34 0.091
AW831052 34 0.091
AW755882 weakly similar to SP|Q9M0Y8|NSF_A Vesicle-fusing ATPase... 33 0.20
TC204808 weakly similar to UP|HQGT_RAUSE (Q9AR73) Hydroquinone g... 32 0.35
TC217156 weakly similar to UP|DUSC_MOUSE (Q9D0T2) Dual specifici... 32 0.45
TC220263 similar to UP|Q9FUJ0 (Q9FUJ0) Cytokinin oxidase, partia... 32 0.45
TC214075 similar to UP|P93014 (P93014) 30S ribosomal protein S5,... 32 0.45
TC219909 weakly similar to UP|ENL2_ARATH (Q9T076) Early nodulin-... 31 0.59
CA800049 31 0.59
TC203363 similar to UP|Q94K24 (Q94K24) Ran binding protein-1, pa... 31 0.59
TC215141 similar to GB|AAL32703.1|17065098|AY062625 nucleotide s... 31 0.77
TC205059 homologue to UP|GBLP_SOYBN (Q39836) Guanine nucleotide-... 31 0.77
TC228435 similar to UP|Q9FJJ1 (Q9FJJ1) Arabidopsis thaliana geno... 31 0.77
TC209977 UP|Q9HF30 (Q9HF30) Pheromone MFalpha1D (Fragment), part... 31 0.77
>TC205624 similar to GB|CAD90763.1|47825426|ATH560718 lumenal protein subunit
of photosystem II {Arabidopsis thaliana;} , partial
(80%)
Length = 1022
Score = 488 bits (1255), Expect = e-138
Identities = 252/298 (84%), Positives = 274/298 (91%)
Frame = +2
Query: 1 MGTIFPPHMTLPPLSSIKPSPTRLLLSPPSPLPKSNSLFCSRPIISSLRKNQTLSLKPSL 60
MGTIFPPH +L PL +IKPSP+R+LL+P SP PKSNSLFCS+PI+SSLRKNQTLS KPS
Sbjct: 11 MGTIFPPH-SLSPLLNIKPSPSRILLAP-SPQPKSNSLFCSKPIVSSLRKNQTLSPKPS- 181
Query: 61 ASSGTSWLSHAQQGLAALAITLALNFSPIFLSGNALASEFDVLNEVPAKDSYVVDDAGVL 120
SGTSWL+HAQQGLAALAI+LALNFSP+ +GNALASEFDVLNE P KDSYV DDAGVL
Sbjct: 182 --SGTSWLAHAQQGLAALAISLALNFSPVLFNGNALASEFDVLNEGPPKDSYVFDDAGVL 355
Query: 121 SRVTRSDLKGLLSDLESRKKFHINFITVRKLTSKADAFEYADQVLERWYPSVEEGNDKGI 180
SRVTRSDLK LLSDLESRK F INFITVRKLTSKADAFEYADQVLERWYPSVEEGN KGI
Sbjct: 356 SRVTRSDLKQLLSDLESRKNFRINFITVRKLTSKADAFEYADQVLERWYPSVEEGNKKGI 535
Query: 181 VVLVTSQKEGAVTGGPAFVQAVGENILDATVAENLPVLATDEKYNEAVLSTAKRLVAAID 240
VVLVTSQKEGAVTGGPAFV+AVGE ILDATV+ENLPVLATDEKYNEA+ STAKRL AAID
Sbjct: 536 VVLVTSQKEGAVTGGPAFVEAVGEKILDATVSENLPVLATDEKYNEAIFSTAKRLAAAID 715
Query: 241 GLPDPGGPQVKDNKRESNFRTKEETEQKRGQFSLVVGGLLVVAFVVPMLQYYAYVAKK 298
GLPDPGGP VKD++RESNF+TKEETE+KRGQF+LVVGG LV+AFVVPM QYYAYV++K
Sbjct: 716 GLPDPGGPTVKDHQRESNFQTKEETEEKRGQFTLVVGGXLVMAFVVPMAQYYAYVSQK 889
>TC205625 similar to GB|CAD90763.1|47825426|ATH560718 lumenal protein subunit
of photosystem II {Arabidopsis thaliana;} , partial
(48%)
Length = 674
Score = 253 bits (645), Expect = 1e-67
Identities = 124/138 (89%), Positives = 133/138 (95%)
Frame = +1
Query: 161 ADQVLERWYPSVEEGNDKGIVVLVTSQKEGAVTGGPAFVQAVGENILDATVAENLPVLAT 220
ADQVLERWYPSVEEGN+KGIVVLVTSQKEGAVTGGPAFV+AVGE ILDATV+ENLPVLAT
Sbjct: 4 ADQVLERWYPSVEEGNNKGIVVLVTSQKEGAVTGGPAFVEAVGEKILDATVSENLPVLAT 183
Query: 221 DEKYNEAVLSTAKRLVAAIDGLPDPGGPQVKDNKRESNFRTKEETEQKRGQFSLVVGGLL 280
DEKYNEA+ STAKRL AAIDGLPDPGGP VKDNKRESNF+TKEETE+KRGQF+LVVGGLL
Sbjct: 184 DEKYNEAIFSTAKRLAAAIDGLPDPGGPTVKDNKRESNFKTKEETEEKRGQFTLVVGGLL 363
Query: 281 VVAFVVPMLQYYAYVAKK 298
V+AFVVPM QYYAYV+KK
Sbjct: 364 VIAFVVPMAQYYAYVSKK 417
>TC205623 similar to GB|CAD90763.1|47825426|ATH560718 lumenal protein subunit
of photosystem II {Arabidopsis thaliana;} , partial
(31%)
Length = 551
Score = 232 bits (592), Expect = 1e-61
Identities = 125/156 (80%), Positives = 136/156 (87%)
Frame = +3
Query: 1 MGTIFPPHMTLPPLSSIKPSPTRLLLSPPSPLPKSNSLFCSRPIISSLRKNQTLSLKPSL 60
MGTIFPPH +L PL +IKPSP+R+LL+P P PKSNSLFCS+PI+SSLRKNQT S KPS
Sbjct: 99 MGTIFPPH-SLSPLLNIKPSPSRILLAP-CPQPKSNSLFCSKPIVSSLRKNQTSSPKPS- 269
Query: 61 ASSGTSWLSHAQQGLAALAITLALNFSPIFLSGNALASEFDVLNEVPAKDSYVVDDAGVL 120
SGTSWL+HAQQGLAALAI+LALNFSP+ +GNALASEFDVLNE P KDSYV DDAGVL
Sbjct: 270 --SGTSWLAHAQQGLAALAISLALNFSPVLFNGNALASEFDVLNEGPPKDSYVFDDAGVL 443
Query: 121 SRVTRSDLKGLLSDLESRKKFHINFITVRKLTSKAD 156
SRVTRSDLK LLSDLESRK F IN ITVRKLTSKAD
Sbjct: 444 SRVTRSDLKQLLSDLESRKNFRINCITVRKLTSKAD 551
>AW568998
Length = 535
Score = 204 bits (520), Expect = 3e-53
Identities = 112/183 (61%), Positives = 140/183 (76%)
Frame = +2
Query: 2 GTIFPPHMTLPPLSSIKPSPTRLLLSPPSPLPKSNSLFCSRPIISSLRKNQTLSLKPSLA 61
GTIFPPH +L PL +IKPSP R+LL+P P PKSNSLF S+PI+S++RKNQT S KPS
Sbjct: 2 GTIFPPH-SLSPLLNIKPSP*RILLAP-CPQPKSNSLFYSKPIMSNVRKNQTSSPKPS-- 169
Query: 62 SSGTSWLSHAQQGLAALAITLALNFSPIFLSGNALASEFDVLNEVPAKDSYVVDDAGVLS 121
S TSWL+HAQQGL ALAI+L LNF P+ +GN S F++LN+ P K+SY D++ VLS
Sbjct: 170 -SNTSWLAHAQQGLXALAISLTLNFXPVLFNGNT*TSXFNILNKGPPKNSYXCDNSKVLS 346
Query: 122 RVTRSDLKGLLSDLESRKKFHINFITVRKLTSKADAFEYADQVLERWYPSVEEGNDKGIV 181
++TRSDLK SD+ESRK F INFIT+ KLTSK +AF A QVL+R PSVEE N++ +
Sbjct: 347 KMTRSDLKQGWSDVESRKNFRINFITIGKLTSKXNAFXCAGQVLKR*CPSVEEENNESDI 526
Query: 182 VLV 184
VL+
Sbjct: 527 VLI 535
>TC219143 similar to UP|Q9FJJ8 (Q9FJJ8) Arabidopsis thaliana genomic DNA,
chromosome 5, TAC clone:K19B1, partial (88%)
Length = 689
Score = 37.0 bits (84), Expect = 0.011
Identities = 33/95 (34%), Positives = 37/95 (38%), Gaps = 5/95 (5%)
Frame = -2
Query: 6 PPHMTLPPLSSIKPSPTRLLLSPPSPLPKSNSLFCSRPIISSLRKNQT-----LSLKPSL 60
PP LPPL P PP P P N+LF S S K + L LK S
Sbjct: 523 PPRPPLPPLPPFPPP*C----FPPPPPPPPNALFASNFKCISSGKGRM*STHFLKLKSSA 356
Query: 61 ASSGTSWLSHAQQGLAALAITLALNFSPIFLSGNA 95
SS H + L A PIFLSG+A
Sbjct: 355 ESSSLMRKKHLLLKVGCLRTWKARTPPPIFLSGSA 251
>TC223815 similar to GB|AAQ65176.1|34365729|BT010553 At3g28670 {Arabidopsis
thaliana;} , partial (11%)
Length = 438
Score = 34.7 bits (78), Expect = 0.053
Identities = 17/31 (54%), Positives = 18/31 (57%)
Frame = +2
Query: 3 TIFPPHMTLPPLSSIKPSPTRLLLSPPSPLP 33
T FPPH T PP S PSPT PP+P P
Sbjct: 158 TSFPPHTTTPP-SPPAPSPTPTRRRPPNPTP 247
>TC228785 weakly similar to GB|AAP42749.1|30984572|BT008736 At3g52060
{Arabidopsis thaliana;} , partial (65%)
Length = 860
Score = 33.9 bits (76), Expect = 0.091
Identities = 24/61 (39%), Positives = 29/61 (47%)
Frame = +1
Query: 6 PPHMTLPPLSSIKPSPTRLLLSPPSPLPKSNSLFCSRPIISSLRKNQTLSLKPSLASSGT 65
PP T PP + SP+ LS PSP P S S S P S K L L P+ AS+
Sbjct: 283 PPSSTTPPTPTSPSSPSTASLSTPSPTPTSPS--SSPP--PSTPKTPNLLLPPASASASN 450
Query: 66 S 66
+
Sbjct: 451 T 453
>AW831052
Length = 419
Score = 33.9 bits (76), Expect = 0.091
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
Frame = +3
Query: 3 TIFPPHMTLPPL----SSIKPSPTRLLLSPPSPLPKSNSLFCSRPI 44
TI PP T P S++ PSPT++ SPP+P K +L P+
Sbjct: 36 TISPPQATAPRYRYHHSTMSPSPTKVTASPPTPFTKYIALRNGAPV 173
>AW755882 weakly similar to SP|Q9M0Y8|NSF_A Vesicle-fusing ATPase (EC
3.6.4.6) (Vesicular-fusion protein NSF), partial (10%)
Length = 440
Score = 32.7 bits (73), Expect = 0.20
Identities = 15/25 (60%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Frame = +2
Query: 12 PPLSSIKPSP-TRLLLSPPSPLPKS 35
PP+S+I PSP T SPPSP+P S
Sbjct: 167 PPISAISPSPVTTTSTSPPSPIPSS 241
>TC204808 weakly similar to UP|HQGT_RAUSE (Q9AR73) Hydroquinone
glucosyltransferase (Arbutin synthase) , partial (25%)
Length = 431
Score = 32.0 bits (71), Expect = 0.35
Identities = 23/61 (37%), Positives = 26/61 (41%)
Frame = +3
Query: 6 PPHMTLPPLSSIKPSPTRLLLSPPSPLPKSNSLFCSRPIISSLRKNQTLSLKPSLASSGT 65
PPH PP SS PT SPP+ +P S +P S S S ASS T
Sbjct: 60 PPHTPSPPSSSTSSPPTPST-SPPNSMPPPTSSTPPQPPSSPSPSTSPPSTSRSSASSET 236
Query: 66 S 66
S
Sbjct: 237 S 239
>TC217156 weakly similar to UP|DUSC_MOUSE (Q9D0T2) Dual specificity protein
phosphatase 12 (Dual specificity phosphatase T-DSP4)
(Dual specificity phosphatase VH1) , partial (18%)
Length = 1245
Score = 31.6 bits (70), Expect = 0.45
Identities = 29/100 (29%), Positives = 40/100 (40%), Gaps = 4/100 (4%)
Frame = +2
Query: 12 PPLSSIKPSPTRLLLSPPSPLPKSNSLFCSRPIISSLRKNQTLSLKPSLASSGTSWLSHA 71
PP S P+ L SPP PKS S R + TLS P+ SS +W +
Sbjct: 197 PPPSPSSPNGKPLSPSPPRRSPKSTRRTPPPNRRSRRRSSSTLSSTPAATSSSCAWPCLS 376
Query: 72 QQGLAALAITLALNFSPIFLS----GNALASEFDVLNEVP 107
+ T ++ + P +S G + F VL E P
Sbjct: 377 E---TPRRRTCSITWKPASISLIAVGRKVPFSFTVLPEFP 487
>TC220263 similar to UP|Q9FUJ0 (Q9FUJ0) Cytokinin oxidase, partial (28%)
Length = 693
Score = 31.6 bits (70), Expect = 0.45
Identities = 28/86 (32%), Positives = 35/86 (40%), Gaps = 10/86 (11%)
Frame = -2
Query: 31 PLPKSNSLFCSRPIISSLRKNQTLSLKPSLASSGT--SWLSHAQQGLAALAIT------- 81
P KSN+ FC P+I R + K SL SS T + L + ALAIT
Sbjct: 467 PSRKSNAFFCFLPLIEINRS*SLVKAKKSL*SSLTHLTLLGAGSSAILALAITPNCPKPP 288
Query: 82 -LALNFSPIFLSGNALASEFDVLNEV 106
A N S F S F V+ +
Sbjct: 287 RTAWNNSKFFCEEQVTNSPFPVMTSI 210
>TC214075 similar to UP|P93014 (P93014) 30S ribosomal protein S5, partial
(76%)
Length = 1140
Score = 31.6 bits (70), Expect = 0.45
Identities = 14/31 (45%), Positives = 18/31 (57%)
Frame = +3
Query: 8 HMTLPPLSSIKPSPTRLLLSPPSPLPKSNSL 38
H+ PPLS++ P P L SPP P +SL
Sbjct: 51 HLHSPPLSTLSPPPPSLSPSPPPPAASLSSL 143
>TC219909 weakly similar to UP|ENL2_ARATH (Q9T076) Early nodulin-like protein
2 precursor (Phytocyanin-like protein), partial (21%)
Length = 943
Score = 31.2 bits (69), Expect = 0.59
Identities = 23/60 (38%), Positives = 28/60 (46%)
Frame = +1
Query: 7 PHMTLPPLSSIKPSPTRLLLSPPSPLPKSNSLFCSRPIISSLRKNQTLSLKPSLASSGTS 66
P +L P SS PSP SPPSP P S+S + P + S PS +SG S
Sbjct: 442 PPPSLGPSSSSPPSPGPSSSSPPSPGPSSSSPPPAGPTSPPSLAPSSNSTAPSPKNSGFS 621
Score = 28.1 bits (61), Expect = 5.0
Identities = 18/54 (33%), Positives = 23/54 (42%)
Frame = +1
Query: 6 PPHMTLPPLSSIKPSPTRLLLSPPSPLPKSNSLFCSRPIISSLRKNQTLSLKPS 59
PP PP PSP+ PS PK+N S P+ S + SL P+
Sbjct: 217 PPTPKTPPFPKTSPSPS------PSQSPKANPPTVSPPLPSPSPSVHSKSLSPA 360
>CA800049
Length = 418
Score = 31.2 bits (69), Expect = 0.59
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Frame = +1
Query: 2 GTIFPPHMTLPPLS---SIKPSPTRLLLSPPSPLPKSNSLFCSRPIISSLRKNQTLSLK 57
G I PP ++PP+ + +PS T L PP+P+P + RK Q L+ K
Sbjct: 229 GQILPPGTSVPPIPPPPAAQPSYTVLPPPPPTPVPMETEADAEARLEEKARKWQQLNSK 405
>TC203363 similar to UP|Q94K24 (Q94K24) Ran binding protein-1, partial (68%)
Length = 1089
Score = 31.2 bits (69), Expect = 0.59
Identities = 23/61 (37%), Positives = 32/61 (51%), Gaps = 3/61 (4%)
Frame = +3
Query: 6 PPHMTL--PPLSSIKPSPTRLLLSPPSPLPKSNSLFCSRPIISSLRKNQT-LSLKPSLAS 62
PP T P L+S++ S +R LLSPP+ K S +R S R + S+ P+L S
Sbjct: 114 PPLATTRTPELTSLQSSSSRRLLSPPARRTKMQSWISNRSFTGSTRTGTSGRSVAPAL*S 293
Query: 63 S 63
S
Sbjct: 294 S 296
>TC215141 similar to GB|AAL32703.1|17065098|AY062625 nucleotide sugar
epimerase-like protein {Arabidopsis thaliana;} , partial
(89%)
Length = 1743
Score = 30.8 bits (68), Expect = 0.77
Identities = 30/111 (27%), Positives = 44/111 (39%), Gaps = 6/111 (5%)
Frame = +2
Query: 3 TIFPPHMTLPPLSSIKPSPTRLLLSPPSPLPKSNSLFCSRPIISSLRKNQTLSLKPSLAS 62
T P PP ++ P+PT PPS +S S P + + +L L+ S A+
Sbjct: 173 TTLPSPPPTPPTATSTPTPTTSSPPPPSAPGRSRSATPPPPAAPTASPSLSLGLRASWAA 352
Query: 63 SGTSW----LSHAQQGL--AALAITLALNFSPIFLSGNALASEFDVLNEVP 107
+ W + GL + TL LN SGN S + V + P
Sbjct: 353 T-APWP*RSAATVSWGLTTSTTTTTLPLNAPGRQCSGNTKCSSWKVTSTTP 502
>TC205059 homologue to UP|GBLP_SOYBN (Q39836) Guanine nucleotide-binding
protein beta subunit-like protein, complete
Length = 1492
Score = 30.8 bits (68), Expect = 0.77
Identities = 33/79 (41%), Positives = 36/79 (44%), Gaps = 3/79 (3%)
Frame = +3
Query: 6 PPHMTLPPLSSIKPSPTRLLLSPPSPLPKSNSLFCSRPIISSLRKNQTLSL---KPSLAS 62
PPH T P S I P TRL +SP + P L SR S L T SL P AS
Sbjct: 318 PPHATNPSSSGILPRRTRLTVSPAAASPA--ILILSRTSSSLL----TASLPYPAPGTAS 479
Query: 63 SGTSWLSHAQQGLAALAIT 81
S + L A LAAL T
Sbjct: 480 SASGTLLLAPP-LAALWAT 533
>TC228435 similar to UP|Q9FJJ1 (Q9FJJ1) Arabidopsis thaliana genomic DNA,
chromosome 5, TAC clone:K19B1, partial (12%)
Length = 1517
Score = 30.8 bits (68), Expect = 0.77
Identities = 21/89 (23%), Positives = 40/89 (44%), Gaps = 8/89 (8%)
Frame = +2
Query: 6 PPHMTLPPLSSIKPSPTRLLLSPPSPLPKSNSLFCSRPIISSLRKNQTLS--------LK 57
PP P+ + P+P L+ +P+ +S ++ + +S R S +K
Sbjct: 284 PPRRLSNPVKAASPTPNPKLVGNITPISESRTMRSGKGQVSQSRSQTPASDISRTSSRMK 463
Query: 58 PSLASSGTSWLSHAQQGLAALAITLALNF 86
+L SS + WL+ + +A T++L F
Sbjct: 464 FNLLSSSSYWLNQIKLSESADKHTVSLGF 550
>TC209977 UP|Q9HF30 (Q9HF30) Pheromone MFalpha1D (Fragment), partial (41%)
Length = 1421
Score = 30.8 bits (68), Expect = 0.77
Identities = 19/48 (39%), Positives = 28/48 (57%), Gaps = 5/48 (10%)
Frame = -1
Query: 3 TIFPPHMT--LPPLSSIK---PSPTRLLLSPPSPLPKSNSLFCSRPII 45
++ PP ++ LPPL + PSP+ + S S L S SLFCS P++
Sbjct: 1304 SLLPPLLSFFLPPLCDLPLFPPSPSMTVHSHLSDLQVSPSLFCSLPLL 1161
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.315 0.133 0.371
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,055,446
Number of Sequences: 63676
Number of extensions: 190191
Number of successful extensions: 2286
Number of sequences better than 10.0: 149
Number of HSP's better than 10.0 without gapping: 1914
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2239
length of query: 298
length of database: 12,639,632
effective HSP length: 97
effective length of query: 201
effective length of database: 6,463,060
effective search space: 1299075060
effective search space used: 1299075060
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 59 (27.3 bits)
Lotus: description of TM0211.11