TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0209.4
         (342 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC216772 homologue to UP|Q9SMP0 (Q9SMP0) Transcription factor Ha...    32  0.32
BI893482                                                               30  1.6
TC205836                                                               28  7.8
TC211434 similar to UP|Q9LU92 (Q9LU92) DNA-binding protein GT-1 ...    28  7.8

>TC216772 homologue to UP|Q9SMP0 (Q9SMP0) Transcription factor Hap5a, partial
           (68%)
          Length = 1040

 Score = 32.3 bits (72), Expect = 0.32
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = -2

Query: 278 TDRGGLIDSHVGHALIASLPCCDGRLDRSVDSAVNRGRVSHRSGQ 322
           T   G I S +G  L   LPC  GRLD +    ++ G  +H  G+
Sbjct: 727 TGPAGAIGSVLGSGLPDGLPCLGGRLDINPGGGIDGGAANHHPGR 593


>BI893482 
          Length = 421

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 20/51 (39%), Positives = 24/51 (46%), Gaps = 3/51 (5%)
 Frame = +3

Query: 81  CSRHTDRG--GLIDS-PGGHALIASLMCCDGRLDRSVDSAVNRGRGPSGRP 128
           C+RH  R    L+ S  G H       C DGR+ R  +SAVN G    G P
Sbjct: 78  CARHVARSERSLVSSHEGHHRTFLGSNCEDGRVWRFFESAVNSGGKCGGGP 230


>TC205836 
          Length = 1114

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 5/79 (6%)
 Frame = -2

Query: 54  TLTQSESRTINSLFTS-----MTSLLTVRVTDCSRHTDRGGLIDSPGGHALIASLMCCDG 108
           T+   ESR I+  F S     ++  L + +  CS       ++ +P    LIAS +    
Sbjct: 741 TILCCESRIISVRFISISIRMLSISLAISIFICS-------ILTNPSRRTLIASTISATA 583

Query: 109 RLDRSVDSAVNRGRGPSGR 127
            L RS+ +   RG  P GR
Sbjct: 582 SLSRSLFTPPPRGTIPGGR 526


>TC211434 similar to UP|Q9LU92 (Q9LU92) DNA-binding protein GT-1
           (Transcription factor GT-4), partial (15%)
          Length = 465

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 19/57 (33%), Positives = 24/57 (41%)
 Frame = +3

Query: 82  SRHTDRGGLIDSPGGHALIASLMCCDGRLDRSVDSAVNRGRGPSGRPRHPTRVGRDI 138
           +RH DRG L   P   A  A+            DS   + RGP GR + P    RD+
Sbjct: 234 ARHDDRGRLQRRPPSSAAAAA-----------DDSRREQRRGPRGRDQGPEEARRDL 371


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.320    0.136    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,157,780
Number of Sequences: 63676
Number of extensions: 201571
Number of successful extensions: 908
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 883
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 908
length of query: 342
length of database: 12,639,632
effective HSP length: 98
effective length of query: 244
effective length of database: 6,399,384
effective search space: 1561449696
effective search space used: 1561449696
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)