TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0209.3
         (1547 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

CD402931 similar to GP|9081793|dbj P0489A01.23 {Oryza sativa (ja...   166  4e-46
BU081086 weakly similar to GP|27817864|db OJ1081_B12.13 {Oryza s...   139  1e-32
TC231883 weakly similar to UP|Q7QBQ3 (Q7QBQ3) AgCP4056 (Fragment...   128  2e-29
TC213121                                                              103  6e-22
TC205614                                                               54  5e-07
TC224067                                                               38  0.030
TC212860 weakly similar to UP|PIF1_YEAST (P07271) DNA repair and...    37  0.051
TC231980 similar to UP|Q8S562 (Q8S562) KAP-2, partial (19%)            33  0.74
TC214673 homologue to UP|Q9LNS1 (Q9LNS1) F1L3.2, partial (5%)          32  1.7
TC215239 UP|H3_PEA (P02300) Histone H3, partial (39%)                  32  2.2
TC209328 similar to UP|KAPS_CATRO (O49204) Adenylyl-sulfate kina...    31  3.7
TC207595 similar to GB|AAG45492.1|12061244|AY013245 36I5.4 {Oryz...    31  4.8
BG239356 weakly similar to GP|974782|emb| cobalamine-independent...    31  4.8
TC231313 UP|Q9FXZ2 (Q9FXZ2) Resistance protein LM12 (Fragment), ...    30  8.2

>CD402931 similar to GP|9081793|dbj P0489A01.23 {Oryza sativa (japonica
            cultivar-group)}, partial (5%)
          Length = 617

 Score =  166 bits (419), Expect(2) = 4e-46
 Identities = 91/156 (58%), Positives = 112/156 (71%)
 Frame = +2

Query: 1096 GTGKTFVWNTLSAAVRSKGLIVLNVASSGIASLLLPGGRTAHSRFSILISINEVSTCNLR 1155
            GT KTF+W TLSA +RSKGL+  +     +ASLLLP G TAHS FSI + I + STCN+ 
Sbjct: 11   GTSKTFLWKTLSAGMRSKGLMSSSCLKR-LASLLLPRG*TAHSTFSIPLVIKDDSTCNIN 187

Query: 1156 QGSPKAELLQKASLIIWDETPMMNKHCFEALDRSLNDVMKTRANYGNDRPFRGKVVVLGG 1215
            QGS +++LL    LIIWDETP+MNK CFEALDR+L D+M ++      +PF GK VVLGG
Sbjct: 188  QGSARSKLLLHTKLIIWDETPVMNKFCFEALDRTLQDIMASQNKDNATKPFGGK-VVLGG 364

Query: 1216 DFRQILPVISKGSRADMVGSTVTSSYLWKYCKVMKL 1251
            DFRQILPVI KGSR D+VGS + +S      KV+KL
Sbjct: 365  DFRQILPVIRKGSRQDIVGSAINASK-----KVLKL 457



 Score = 39.3 bits (90), Expect(2) = 4e-46
 Identities = 21/48 (43%), Positives = 29/48 (59%)
 Frame = +1

Query: 1254 NMRLQSASS*TSATEIREFAQWILKVGDETVDTIDEDETTIEIPSDLL 1301
            NMRL + ++     +IREF  WIL + D   D  +EDE  I+IP +LL
Sbjct: 463  NMRLGTTNNNEDRDDIREFVDWILMIRDGNRD--EEDEGEIDIPKNLL 600


>BU081086 weakly similar to GP|27817864|db OJ1081_B12.13 {Oryza sativa
            (japonica cultivar-group)}, partial (7%)
          Length = 426

 Score =  139 bits (349), Expect = 1e-32
 Identities = 70/137 (51%), Positives = 93/137 (67%), Gaps = 3/137 (2%)
 Frame = +2

Query: 1371 DEDSEVHAEWF---TSEFLNDVQCSGIPNHRLILKERVPIMLLRNIDQAGGLCNGTRLRV 1427
            ++   + +E F   T+EF+N +  S +PNH++ LK    IMLLRN+DQ  GLCN TRL +
Sbjct: 14   EKSDTIESEGFSTITTEFINSLSTSRLPNHKIKLKVDSRIMLLRNLDQNEGLCNSTRLII 193

Query: 1428 THLTQYIIVATVLSGIRLGKTEYIPRITLTPSDSGLPFKFSRRQFPVTLCFAMTINKSQG 1487
            T    +II A ++SG   G T YIPR+  +PS S  PFK  RR+FP+ + +AMTINKSQG
Sbjct: 194  TMFADHIIEAKIMSGKGQGNTVYIPRLATSPSQSPWPFKLIRRKFPIIVSYAMTINKSQG 373

Query: 1488 QSLSHVGLYLPRPVFTH 1504
            Q L+ VGLYLP PVF+H
Sbjct: 374  QLLASVGLYLPTPVFSH 424


>TC231883 weakly similar to UP|Q7QBQ3 (Q7QBQ3) AgCP4056 (Fragment), partial
           (17%)
          Length = 1263

 Score =  128 bits (321), Expect = 2e-29
 Identities = 62/132 (46%), Positives = 87/132 (64%)
 Frame = +1

Query: 525 FPAGMPTIEFQKRGFPHAHILLWL*PQHKIKTGDDIDKHISAELPDPKLYPKLYKAVSSY 584
           F   M TIEFQKRG PH  +LL+L P ++  + D+ID  ISAE+P  +  P+LY  V ++
Sbjct: 865 FKEVMHTIEFQKRGLPHIQLLLFLHPDNQYPSSDEIDHIISAEIPSHEDDPELYTLVQNH 1044

Query: 585 MIHGPCGPIDPKSVCMVDGKCSKHFPKKFQNCTTVDDDGFPIYKRRTTRITVTKKGVPLD 644
           M+HGPCG +   S CM +GKCS+ +PK F   T +D +G+ +Y+RR    T+ K  V +D
Sbjct: 1045MVHGPCGILQSHSPCMKEGKCSRFYPKIFLPNTLLDLNGYLVYRRRNDGRTILKNSVIVD 1224

Query: 645 NGFVVPYNPKLL 656
           N ++VPYN KLL
Sbjct: 1225NRYLVPYNAKLL 1260


>TC213121 
          Length = 713

 Score =  103 bits (257), Expect = 6e-22
 Identities = 50/114 (43%), Positives = 73/114 (63%)
 Frame = +2

Query: 1019 ARSLKDFPSLSYPTFAEIMNFENKFVADELNYNKEEMSKIHEELVRSLTGEQKAAYKKVL 1078
            A S ++FP +SYP    +  + NK + +EL Y+K+ ++        SLT E  + + K++
Sbjct: 269  ANSHRNFPLMSYPIGYIVNPYGNKLIYNELAYDKDILAA*FSRCYHSLTDEHASIFNKIM 448

Query: 1079 DVVMSNKGGFLFLYGFGGTGKTFVWNTLSAAVRSKGLIVLNVASSGIASLLLPG 1132
             ++ +  GG  FLYG+GGTGKTFVW TLS+ + S   IVL +ASSGI S+LLPG
Sbjct: 449  HMIATQSGGVYFLYGYGGTGKTFVWKTLSSTIHSNSGIVLTMASSGILSMLLPG 610



 Score = 50.4 bits (119), Expect = 6e-06
 Identities = 32/82 (39%), Positives = 43/82 (52%)
 Frame = +3

Query: 738 IVGAKCRYLTPCEATWRTFKFDIHDRWPPVVRLGFHLPNQQKVLFKESDDFEEVVQKCSR 797
           +V   C Y++P E   +   F +H R P V  L FHL NQ     KES     ++ K + 
Sbjct: 15  LVNVICIYVSPPETC*KISAFPMHGRAPTVECLYFHLENQ*P--*KESQQIGSMLSKSTI 188

Query: 798 KETKFLAWMKANKRYPEGRNLT 819
           KE+ F A M +NK Y  GR+LT
Sbjct: 189 KESIFTACMDSNKMYHHGRDLT 254


>TC205614 
          Length = 742

 Score = 53.9 bits (128), Expect = 5e-07
 Identities = 22/36 (61%), Positives = 27/36 (74%)
 Frame = +2

Query: 743 CRYLTPCEATWRTFKFDIHDRWPPVVRLGFHLPNQQ 778
           C+Y++PCEA WR F F I+ R P V RL FHLPN+Q
Sbjct: 632 CQYISPCEACWRIFSFQIYGRIPIVERLYFHLPNEQ 739


>TC224067 
          Length = 415

 Score = 38.1 bits (87), Expect = 0.030
 Identities = 23/41 (56%), Positives = 30/41 (73%), Gaps = 2/41 (4%)
 Frame = -2

Query: 1476 LCFAMTINKSQGQSLSHV-GLYLPRPV-FTHGQLYVALSRV 1514
            +C+ M INKS GQ+LS V G+ LPRP   +HGQ YV L++V
Sbjct: 360  VCYTMKINKSHGQTLSQVGGVLLPRPN**SHGQ-YVTLNQV 241


>TC212860 weakly similar to UP|PIF1_YEAST (P07271) DNA repair and recombination
            protein PIF1, mitochondrial precursor, partial (8%)
          Length = 596

 Score = 37.4 bits (85), Expect = 0.051
 Identities = 22/43 (51%), Positives = 29/43 (67%)
 Frame = +2

Query: 1478 FAMTINKSQGQSLSHVGLYLPRPVFTHGQLYVALSRVKSRKGL 1520
            +AM+I+K QG +L  V   L R  F  G +YVALSRV+S +GL
Sbjct: 5    WAMSIHKCQGMTLERVHTDLSR-AFGCGMVYVALSRVRSLEGL 130


>TC231980 similar to UP|Q8S562 (Q8S562) KAP-2, partial (19%)
          Length = 590

 Score = 33.5 bits (75), Expect = 0.74
 Identities = 12/36 (33%), Positives = 23/36 (63%)
 Frame = -3

Query: 927 ILTTNAMSRPKEVWEKTWRILSDGILYERRKALNIP 962
           +L T   S+ ++VW++TW  ++D I+Y  +K+   P
Sbjct: 582 LLLTATXSKSEQVWDQTWHWMADDIVYNYKKSSTSP 475


>TC214673 homologue to UP|Q9LNS1 (Q9LNS1) F1L3.2, partial (5%)
          Length = 445

 Score = 32.3 bits (72), Expect = 1.7
 Identities = 14/31 (45%), Positives = 21/31 (67%)
 Frame = -2

Query: 280 KHMLLSFLFSTRFFSRMVKTDFEKISPSVSC 310
           KH L+ FLFST   ++  KTD++ +S +V C
Sbjct: 444 KHHLVFFLFSTILLTKNTKTDYQGLSINVHC 352


>TC215239 UP|H3_PEA (P02300) Histone H3, partial (39%)
          Length = 340

 Score = 32.0 bits (71), Expect = 2.2
 Identities = 12/18 (66%), Positives = 16/18 (88%)
 Frame = -3

Query: 1472 FPVTLCFAMTINKSQGQS 1489
            FP+ +CFAMT NKS+GQ+
Sbjct: 326  FPLIVCFAMTTNKSEGQT 273


>TC209328 similar to UP|KAPS_CATRO (O49204) Adenylyl-sulfate kinase,
            chloroplast precursor  (APS kinase)
            (Adenosine-5'phosphosulfate kinase) (ATP
            adenosine-5'-phosphosulfate 3'-phosphotransferase) ,
            partial (69%)
          Length = 1056

 Score = 31.2 bits (69), Expect = 3.7
 Identities = 25/90 (27%), Positives = 40/90 (43%)
 Frame = +1

Query: 1081 VMSNKGGFLFLYGFGGTGKTFVWNTLSAAVRSKGLIVLNVASSGIASLLLPGGRTAHSRF 1140
            ++  KG  ++L G  G+GKT +   LS ++ SKG +          S +L G    H   
Sbjct: 235  LLQQKGCVIWLTGLSGSGKTTIACALSRSLHSKGKL----------SYILDGDNIRHGLN 384

Query: 1141 SILISINEVSTCNLRQGSPKAELLQKASLI 1170
              L    E  + N+R+    A+L   A +I
Sbjct: 385  QDLSFRAEDRSENIRRIGEVAKLFADAGVI 474


>TC207595 similar to GB|AAG45492.1|12061244|AY013245 36I5.4 {Oryza sativa
           (japonica cultivar-group);} , partial (12%)
          Length = 607

 Score = 30.8 bits (68), Expect = 4.8
 Identities = 15/29 (51%), Positives = 19/29 (64%)
 Frame = +3

Query: 152 FFFLPVSIYPSFLNYISSNICNYMFLCCV 180
           FFF+ +SI+ SFLN I SN+    FL  V
Sbjct: 498 FFFI*MSIFLSFLNQIKSNVSYLYFLTLV 584


>BG239356 weakly similar to GP|974782|emb| cobalamine-independent methionine
           synthase {Solenostemon scutellarioides}, partial (15%)
          Length = 382

 Score = 30.8 bits (68), Expect = 4.8
 Identities = 18/59 (30%), Positives = 30/59 (50%)
 Frame = +2

Query: 402 FCHRLLPGDIAICLTIARMQWPYARNLATRTSS*HSLAIQLGVKYKGFYNLGITSRRTD 460
           + HRLL G + +   +A + W Y RN   R  + + +A  +  + + F   GIT  +TD
Sbjct: 47  YTHRLLNGMLTV--PVATLNWNYVRNDQPRFETTYHIASCIKDEVEDFEKAGITVIQTD 217


>TC231313 UP|Q9FXZ2 (Q9FXZ2) Resistance protein LM12 (Fragment), complete
          Length = 1314

 Score = 30.0 bits (66), Expect = 8.2
 Identities = 38/149 (25%), Positives = 65/149 (43%), Gaps = 13/149 (8%)
 Frame = +1

Query: 1039 FENKFVADELNYNKEEMSKIHEELVRSLTGEQKAAY--KKVLDVVMSNKGGFLFLYGFGG 1096
            +E KF+ + +     + +  H  +   L G +      K +LDV   +    + ++G  G
Sbjct: 481  YEYKFIKEIVESVSNKFNHDHLHVSDVLVGLESPVLEVKSLLDVGRDDVVHMVGIHGLAG 660

Query: 1097 TGKTFVWNTLSAAVRSKGLIVLNVASSGIASLLLPG-GRTAHS--------RFSILISIN 1147
             GKT    TL+ AV +      ++A    AS  L    RT+++         F +  +  
Sbjct: 661  VGKT----TLAIAVYN------SIAGHFEASCFLENVKRTSNTINGLEKLQSFLLSKTAG 810

Query: 1148 EVSTCNLRQGSP--KAELLQKASLIIWDE 1174
            E+   N R+G P  K +L QK  L+I D+
Sbjct: 811  EIKLTNWREGIPIIKRKLKQKKILLILDD 897


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.331    0.145    0.455 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,987,638
Number of Sequences: 63676
Number of extensions: 1066122
Number of successful extensions: 5751
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 5651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5747
length of query: 1547
length of database: 12,639,632
effective HSP length: 110
effective length of query: 1437
effective length of database: 5,635,272
effective search space: 8097885864
effective search space used: 8097885864
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 65 (29.6 bits)