
BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0207.8
(258 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC213230 84 4e-17
BE661156 55 4e-08
TC230101 similar to UP|Q41707 (Q41707) Extensin class 1 protein ... 44 1e-04
TC225027 similar to UP|Q39835 (Q39835) Extensin, partial (49%) 39 0.002
TC206957 weakly similar to UP|Q9LUI1 (Q9LUI1) Extensin protein-l... 37 0.007
TC224876 weakly similar to UP|Q39835 (Q39835) Extensin, partial ... 37 0.009
TC224968 similar to UP|Q39835 (Q39835) Extensin, partial (44%) 37 0.009
TC224645 homologue to UP|Q41707 (Q41707) Extensin class 1 protei... 37 0.009
TC225016 similar to UP|Q39835 (Q39835) Extensin, partial (32%) 37 0.012
TC226761 similar to UP|Q9FYE4 (Q9FYE4) EF-hand calcium binding p... 37 0.012
TC224734 homologue to UP|Q09085 (Q09085) Hydroxyproline-rich gly... 36 0.020
TC224723 hydroxyproline-rich glycoprotein 35 0.026
TC217852 weakly similar to UP|Q9FF85 (Q9FF85) Emb|CAB80929.1, pa... 35 0.026
TC204718 similar to GB|AAL84954.1|19310435|AY078954 F17H15.1/F17... 35 0.026
TC224573 homologue to UP|Q41707 (Q41707) Extensin class 1 protei... 35 0.034
BM091938 35 0.044
TC224546 similar to UP|Q41707 (Q41707) Extensin class 1 protein ... 35 0.044
TC224753 homologue to UP|Q09085 (Q09085) Hydroxyproline-rich gly... 35 0.044
BU549122 27 0.054
TC204052 homologue to UP|Q39835 (Q39835) Extensin, partial (67%) 34 0.058
>TC213230
Length = 810
Score = 83.6 bits (205), Expect(2) = 4e-17
Identities = 72/213 (33%), Positives = 93/213 (42%)
Frame = +2
Query: 1 MEGAGSYNDWGYYSPPQPHSTLSPYAAAFSVNRPPFNDVSAPFVDSDEPAYGVPPNPVHY 60
M+G G Y+DW YY+ P S LS +AA FSVN ++ S+ F+D+ E A +P
Sbjct: 131 MKGVGGYHDWPYYASPT--SNLSAFAAPFSVNPYTSSEASSQFMDTAESAETLP------ 286
Query: 61 PVHPRSYGYDFFPESDSVSKPYGYSGLASEDSFWYDQWPPTSSKPSLAEPQPCFPDLNSM 120
P+ + Y YDFF SG E
Sbjct: 287 PIQFQPYRYDFF------------SGPVRE------------------------------ 340
Query: 121 GLASEDSFGYEQWLSASSKPSLGEAQPYFPSYIPSTIPSPTSSVAAPIHWSSSSGFAPLD 180
L S F + S S++ +L EAQPY S S I +S+ AAP HWSS AP
Sbjct: 341 -LDSAAQFSHLGLPSYSARSNLVEAQPYTAS---SAIHDHSSNSAAPYHWSSG---APSS 499
Query: 181 VVPSFGDYAAENSSEFGFSGLGAGSWNQFSGFD 213
PS + A S E GFSG A SW+QF F+
Sbjct: 500 DWPSLRE--ANRSPELGFSGQSAXSWDQFPEFN 592
Score = 21.6 bits (44), Expect(2) = 4e-17
Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 3/37 (8%)
Frame = +3
Query: 210 SGFDHGKGKQVGAESSL---SSKQTSLVAAEERMNQG 243
S GK K VG S+L +K E+R NQG
Sbjct: 585 SSIARGKXKXVGVGSNLFRKGNKCRLXPVGEQRRNQG 695
>BE661156
Length = 474
Score = 54.7 bits (130), Expect = 4e-08
Identities = 28/61 (45%), Positives = 36/61 (58%)
Frame = +2
Query: 1 MEGAGSYNDWGYYSPPQPHSTLSPYAAAFSVNRPPFNDVSAPFVDSDEPAYGVPPNPVHY 60
M+G G Y+DW YYS P S LS +AA FS N F++ + F+DS E VPPN +
Sbjct: 293 MKGVGGYHDWPYYSSPA--SNLSAFAAPFSXNPYTFSEALSQFMDSAEXGETVPPNSLFS 466
Query: 61 P 61
P
Sbjct: 467 P 469
>TC230101 similar to UP|Q41707 (Q41707) Extensin class 1 protein precursor,
partial (47%)
Length = 944
Score = 43.5 bits (101), Expect = 1e-04
Identities = 44/166 (26%), Positives = 54/166 (32%), Gaps = 17/166 (10%)
Frame = +2
Query: 12 YYSPPQPHSTLSPYAAAFSVNRPPFNDVSAP---FVDSDEPAYGVPPNPVHY-------- 60
YYSPP P+ SP + PP S P + S P PP P +Y
Sbjct: 185 YYSPPPPYQYTSPPPPPYLYKSPPPPSPSPPPPYYYKSPPPPSPSPPPPYYYKSPPPPSP 364
Query: 61 -PVHPRSYGYDFFPESDSVSKPYGYS-----GLASEDSFWYDQWPPTSSKPSLAEPQPCF 114
P P Y PE PY Y + ++Y PP S P P P +
Sbjct: 365 SPPPPYYYKSPPPPEKSPAPTPYYYKSPPPPSPSPPPPYYYKSPPPPSPSP----PPPYY 532
Query: 115 PDLNSMGLASEDSFGYEQWLSASSKPSLGEAQPYFPSYIPSTIPSP 160
AS Y + PS PY+ P PSP
Sbjct: 533 YKAPPPPSASPPPAYY---YKSPPPPSPSPTPPYYYKTAPPPSPSP 661
Score = 35.0 bits (79), Expect = 0.034
Identities = 45/161 (27%), Positives = 58/161 (35%), Gaps = 2/161 (1%)
Frame = +2
Query: 14 SPPQPHSTLSPYAAAFSVNRPPFNDVSAPFVDSDEPA--YGVPPNPVHYPVHPRSYGYDF 71
SPP P+ SP + S P + P S PA Y PP P P P Y
Sbjct: 464 SPPPPYYYKSPPPPSPSPPPPYYYKAPPPPSASPPPAYYYKSPPPPSPSPTPPYYY-KTA 640
Query: 72 FPESDSVSKPYGYSGLASEDSFWYDQWPPTSSKPSLAEPQPCFPDLNSMGLASEDSFGYE 131
P S S PY Y PP KP P P S S + Y+
Sbjct: 641 PPPSPSPPPPYYYKS------------PPPPEKP----PAPTPYYNKSPPPPSPTPYYYK 772
Query: 132 QWLSASSKPSLGEAQPYFPSYIPSTIPSPTSSVAAPIHWSS 172
+ S P ++ P P Y + P+P+ AAP ++ S
Sbjct: 773 SPPTPSPTPYYYKSAPPPPPYYYKSAPTPS---AAPYYYES 886
Score = 31.6 bits (70), Expect = 0.37
Identities = 36/150 (24%), Positives = 50/150 (33%), Gaps = 1/150 (0%)
Frame = +2
Query: 12 YYSPPQPHSTLSPYAAAFSVNRPPFNDVSAPFVDSDEPAYGVPPNPVHYPVHPRSYGYDF 71
YY P P S P A + PP + P+ P P P +Y P
Sbjct: 530 YYKAPPPPSASPPPAYYYKSPPPPSPSPTPPYYYKTAPPPSPSPPPPYYYKSPPP----- 694
Query: 72 FPESDSVSKP-YGYSGLASEDSFWYDQWPPTSSKPSLAEPQPCFPDLNSMGLASEDSFGY 130
PE P Y S + +Y + PPT S P P + + Y
Sbjct: 695 -PEKPPAPTPYYNKSPPPPSPTPYYYKSPPTPS------PTPYY----YKSAPPPPPYYY 841
Query: 131 EQWLSASSKPSLGEAQPYFPSYIPSTIPSP 160
+ + S+ P E+ P P Y + P P
Sbjct: 842 KSAPTPSAAPYYYESPPPPPPYYYKSPPPP 931
>TC225027 similar to UP|Q39835 (Q39835) Extensin, partial (49%)
Length = 747
Score = 39.3 bits (90), Expect = 0.002
Identities = 25/71 (35%), Positives = 28/71 (39%)
Frame = +2
Query: 12 YYSPPQPHSTLSPYAAAFSVNRPPFNDVSAPFVDSDEPAYGVPPNPVHYPVHPRSYGYDF 71
Y+SPP PH PY PPF S P Y PP PVH P P +
Sbjct: 548 YHSPPPPH----PYPHPHPHPHPPFVHYSPPPSPKKPYKYPSPPPPVHPPYTPHPVYHS- 712
Query: 72 FPESDSVSKPY 82
P +KPY
Sbjct: 713 -PPPPPTNKPY 742
Score = 29.3 bits (64), Expect = 1.9
Identities = 22/73 (30%), Positives = 26/73 (35%)
Frame = +2
Query: 12 YYSPPQPHSTLSPYAAAFSVNRPPFNDVSAPFVDSDEPAYGVPPNPVHYPVHPRSYGYDF 71
YY P P S PY + + PP P +P Y P P P + Y Y
Sbjct: 353 YYHSPPPPSPPPPYKKPYYYHSPP-----PP*PPPPKPYYHHSPPPP--PPKKKPYYYHS 511
Query: 72 FPESDSVSKPYGY 84
P KPY Y
Sbjct: 512 PPPPPPKKKPYYY 550
Score = 28.5 bits (62), Expect = 3.2
Identities = 23/86 (26%), Positives = 31/86 (35%)
Frame = +2
Query: 20 STLSPYAAAFSVNRPPFNDVSAPFVDSDEPAYGVPPNPVHYPVHPRSYGYDFFPESDSVS 79
+TL+ A S++ PP + +D Y PP P YP VS
Sbjct: 17 ATLTLVLAIVSLSLPPQ-------ILADNYLYSSPPPPKKYP---------------PVS 130
Query: 80 KPYGYSGLASEDSFWYDQWPPTSSKP 105
PY Y ++Y PP S P
Sbjct: 131 PPYHYPSPPPPPKYYYLSLPPPSPSP 208
>TC206957 weakly similar to UP|Q9LUI1 (Q9LUI1) Extensin protein-like, partial
(7%)
Length = 595
Score = 37.4 bits (85), Expect = 0.007
Identities = 31/102 (30%), Positives = 43/102 (41%), Gaps = 3/102 (2%)
Frame = +2
Query: 14 SPPQPHSTLSPY---AAAFSVNRPPFNDVSAPFVDSDEPAYGVPPNPVHYPVHPRSYGYD 70
+PP P S + Y A+A S PP + P+ + +Y PP P P +Y
Sbjct: 86 TPPVPSSYSTSYPPPASATSYPPPPSPPSATPYHTTGSYSYPPPPPP------PTAY--- 238
Query: 71 FFPESDSVSKPYGYSGLASEDSFWYDQWPPTSSKPSLAEPQP 112
P S S PY S + S + PP+S P+ A P P
Sbjct: 239 --PPYSSHSSPYPPSSYPPQPSSYPPPPPPSSYPPASAYPYP 358
Score = 28.5 bits (62), Expect = 3.2
Identities = 20/61 (32%), Positives = 26/61 (41%), Gaps = 4/61 (6%)
Frame = +2
Query: 5 GSYNDWGYYSPPQPHSTLSPYAAAFSVNRPPFNDVSAPFVDSDEP----AYGVPPNPVHY 60
GSY+ Y PP P T PP++ S+P+ S P +Y PP P Y
Sbjct: 194 GSYS----YPPPPPPPTA----------YPPYSSHSSPYPPSSYPPQPSSYPPPPPPSSY 331
Query: 61 P 61
P
Sbjct: 332 P 334
>TC224876 weakly similar to UP|Q39835 (Q39835) Extensin, partial (66%)
Length = 1340
Score = 37.0 bits (84), Expect = 0.009
Identities = 33/116 (28%), Positives = 42/116 (35%), Gaps = 15/116 (12%)
Frame = +3
Query: 12 YYSPPQPHSTLSPYAAAFSVNRP-------PFNDVSAPFVDSDEPA-------YGVPPNP 57
Y+SPP PH P+ + P P P+V P Y PP P
Sbjct: 822 YHSPPPPHPYPHPHPHPYPHPHPHPHPHPHPHPHPHPPYVYPSPPPPPKKPYKYPSPPPP 1001
Query: 58 VHYPVHPRSYGYDFFPESDSVSKPYGYSGLASEDSFWYDQWPPTSSKPSL-AEPQP 112
VH+ HP + P S KPY Y PP ++KP + A P P
Sbjct: 1002VHHYPHPHPPFVHYSP-PPSPKKPYKYPSPPP---------PPPTNKPYIYASPPP 1139
Score = 30.4 bits (67), Expect = 0.83
Identities = 29/115 (25%), Positives = 38/115 (32%), Gaps = 11/115 (9%)
Frame = +1
Query: 12 YYSPPQPHSTLSPYAAAFSVNRPPFNDVSAPFVDSDEPAYGVPP--NPVHY-------PV 62
YY P P S P + + PP P+ P PP P +Y P
Sbjct: 277 YYHSPPPPSPTPPKKPYYYHSPPPPPPKKKPYYYHSPPPPSPPPPKKPYYYHSPPPPSPS 456
Query: 63 HPRSYGYDFFPESDSVSKPYGYSGLASEDSFWYDQWPPTSSKPSL--AEPQPCFP 115
P+ Y P S PY + ++Y PP KP + P P P
Sbjct: 457 PPKKPYYYHSPPPPSPPPPY-------KKPYYYHSPPPPPKKPYKYPSPPPPVHP 600
Score = 27.3 bits (59), Expect = 7.1
Identities = 17/60 (28%), Positives = 20/60 (33%)
Frame = +1
Query: 46 SDEPAYGVPPNPVHYPVHPRSYGYDFFPESDSVSKPYGYSGLASEDSFWYDQWPPTSSKP 105
+D Y PP P YP VS PY Y ++Y PP S P
Sbjct: 127 ADNYLYSSPPPPKKYP---------------PVSPPYHYPSPPPPPKYYYHSPPPPSPSP 261
>TC224968 similar to UP|Q39835 (Q39835) Extensin, partial (44%)
Length = 681
Score = 37.0 bits (84), Expect = 0.009
Identities = 19/53 (35%), Positives = 23/53 (42%)
Frame = +3
Query: 12 YYSPPQPHSTLSPYAAAFSVNRPPFNDVSAPFVDSDEPAYGVPPNPVHYPVHP 64
Y+SPP PH P+ PP+ S P Y PP PVH+ HP
Sbjct: 510 YHSPPPPHPYPHPHPHPHPHPHPPYVYPSPPPPPKKPYKYPSPPPPVHHYPHP 668
Score = 30.4 bits (67), Expect = 0.83
Identities = 22/79 (27%), Positives = 26/79 (32%), Gaps = 6/79 (7%)
Frame = +3
Query: 12 YYSPPQPHSTLSPYAAAFSVNRPPFNDVSAPFVDSDEPAYGVPPNPVHY------PVHPR 65
YY P P S PY + + PP P PP P +Y P +
Sbjct: 315 YYHSPPPPSPPPPYKKPYYYHSPP-------------PPSPPPPKPYYYHSPPPPPPKKK 455
Query: 66 SYGYDFFPESDSVSKPYGY 84
Y Y P KPY Y
Sbjct: 456 PYYYHSPPPPPPKKKPYYY 512
Score = 27.7 bits (60), Expect = 5.4
Identities = 18/65 (27%), Positives = 21/65 (31%)
Frame = +3
Query: 46 SDEPAYGVPPNPVHYPVHPRSYGYDFFPESDSVSKPYGYSGLASEDSFWYDQWPPTSSKP 105
+D Y PP P YP VS PY Y ++Y PP S P
Sbjct: 150 ADNYLYSSPPPPKKYP---------------PVSPPYHYPSPPPPPKYYYHSPPPPSPPP 284
Query: 106 SLAEP 110
P
Sbjct: 285 PSPPP 299
>TC224645 homologue to UP|Q41707 (Q41707) Extensin class 1 protein precursor,
partial (58%)
Length = 856
Score = 37.0 bits (84), Expect = 0.009
Identities = 41/161 (25%), Positives = 51/161 (31%), Gaps = 12/161 (7%)
Frame = +2
Query: 12 YYSPPQPHSTLSPYAAAFSVNRPPFNDVSAPFVDSDEPAYGVPPNPVHYPVHPRSYGYDF 71
Y SPP P + PY + PP +P+ Y PP P P HP Y
Sbjct: 41 YKSPPPPSPSPPPYY--YKSPPPPSPSPPSPYY------YKSPPPPHKDPYHPPYYYKSP 196
Query: 72 FPESDSVSKPYGYS-----GLASEDSFWYDQWPPTSSKP-------SLAEPQPCFPDLNS 119
P S S PY Y + ++Y PP S P S P P P
Sbjct: 197 PPPSPSPPPPYYYKSPPPPSPSPPPPYYYKSPPPPSPSPPPPYYYKSPPPPSPSPPP--- 367
Query: 120 MGLASEDSFGYEQWLSASSKPSLGEAQPYFPSYIPSTIPSP 160
+ + PS PY+ P PSP
Sbjct: 368 -----------PYYYKSPPPPSPSPPPPYYYKSPPPPSPSP 457
Score = 35.0 bits (79), Expect = 0.034
Identities = 45/199 (22%), Positives = 60/199 (29%), Gaps = 25/199 (12%)
Frame = +2
Query: 12 YYSPPQPHSTLSPYAAAFSVNRPPFNDVSAP-FVDSDEPAYGVPPNPVHYPVHPRSYGYD 70
YY P P S P + PP P + S P PP P +Y P
Sbjct: 326 YYKSPPPPSPSPPPPYYYKSPPPPSPSPPPPYYYKSPPPPSPSPPPPYYYKSPP------ 487
Query: 71 FFPESDSVSKPYGYSGLASED-----SFWYDQWPPTSSKP-------SLAEPQPCFPDLN 118
P S S PY Y D ++Y PP S P S P P P
Sbjct: 488 --PPSPSPPPPYYYKSPPPPDPSPPPPYYYKSPPPPSPSPPPPYYYKSPPPPSPSPPP-- 655
Query: 119 SMGLASEDSFGYEQWLSASSKPSLGEAQPYF------------PSYIPSTIPSPTSSVAA 166
+ + PS PY+ P Y + P P+ S
Sbjct: 656 ------------PYYYKSPPPPSPSPPPPYYYKSPPPPSPSPPPPYYYKSPPPPSPSPPP 799
Query: 167 PIHWSSSSGFAPLDVVPSF 185
P ++ S +P+ P +
Sbjct: 800 PYYYKSPPPPSPVSHPPYY 856
>TC225016 similar to UP|Q39835 (Q39835) Extensin, partial (32%)
Length = 973
Score = 36.6 bits (83), Expect = 0.012
Identities = 33/123 (26%), Positives = 45/123 (35%), Gaps = 22/123 (17%)
Frame = +2
Query: 12 YYSPPQPHSTLSPYAAAFSVNRP-------PFNDVSAPFVDSDEPA-------YGVPPNP 57
Y+SPP PH P+ + P P P+V P Y PP P
Sbjct: 230 YHSPPPPHPYPHPHPHPYPHPHPHPHPHPHPHPHPHPPYVYPSPPPPPKKPYKYPSPPPP 409
Query: 58 VHYPVHPRSYGYDFFPESDSVSKPYGYSGLA-------SEDSFWYDQWPPTSSKPSL-AE 109
VH+ HP + P S KPY Y + ++ PP ++KP + A
Sbjct: 410 VHHYPHPHPPFVHYSP-PPSPKKPYKYPSPPPPVHPPYTPHPVYHSPPPPPTNKPYIYAS 586
Query: 110 PQP 112
P P
Sbjct: 587 PPP 595
Score = 31.2 bits (69), Expect = 0.49
Identities = 26/94 (27%), Positives = 34/94 (35%)
Frame = +2
Query: 12 YYSPPQPHSTLSPYAAAFSVNRPPFNDVSAPFVDSDEPAYGVPPNPVHYPVHPRSYGYDF 71
Y+SPP P PY + + PP P+ Y PP P YP HP + Y
Sbjct: 140 YHSPPPPPPKKKPY---YYHSPPPPPPKKKPYY------YHSPPPPHPYP-HPHPHPY-- 283
Query: 72 FPESDSVSKPYGYSGLASEDSFWYDQWPPTSSKP 105
P P+ + + Y PP KP
Sbjct: 284 -PHPHPHPHPHPHPHPHPHPPYVYPSPPPPPKKP 382
>TC226761 similar to UP|Q9FYE4 (Q9FYE4) EF-hand calcium binding protein-like
(At5g04170), partial (63%)
Length = 1169
Score = 36.6 bits (83), Expect = 0.012
Identities = 42/151 (27%), Positives = 52/151 (33%), Gaps = 6/151 (3%)
Frame = +2
Query: 50 AYGVPPNPVHYPVHPRSYGYDFFPESDSVS-----KPYGYSGLASEDSFWYDQWPPTSSK 104
+YG PP P Y HP S Y P S S +PYG A + Y P
Sbjct: 98 SYGAPPPPQPYGAHPPSQSYGAPPPSQSYGAPPPPQPYG----APPPAQPYSASPYAQPS 265
Query: 105 PSLAEPQPCFPDLNSMGLASEDSFGYEQWLSASSKPSLGEAQPYFPSYIPSTIPSPTS-S 163
A P P S S GY P+ A P F S +PS P T +
Sbjct: 266 APYAAPYNKPPKNESHSHGGGSSGGY---------PAPAYASP-FASLVPSAFPPGTDPN 415
Query: 164 VAAPIHWSSSSGFAPLDVVPSFGDYAAENSS 194
V A + G +D G ++ N S
Sbjct: 416 VVACFQMADQDGSGFIDDKEMQGALSSYNQS 508
>TC224734 homologue to UP|Q09085 (Q09085) Hydroxyproline-rich glycoprotein
(HRGP) (Fragment), partial (48%)
Length = 990
Score = 35.8 bits (81), Expect = 0.020
Identities = 46/179 (25%), Positives = 58/179 (31%), Gaps = 20/179 (11%)
Frame = +2
Query: 14 SPPQPHSTLSPYAAAFSVNRPPFNDVSAP---FVDSDEPAYGVPPNPVHYPVHPRSYGYD 70
SPP P+ SP + S PP D S P + S P PP P +Y P
Sbjct: 26 SPPPPYYYKSPPPPSPS---PPPPDPSPPPPYYYKSPPPPSPSPPPPYYYKSPP------ 178
Query: 71 FFPESDSVSKPYGYSGL-----ASEDSFWYDQWPPTSSKPSLAEPQPCFPDLNSMGLASE 125
P S S PY Y + ++Y PP S P P P +
Sbjct: 179 --PPSPSPPPPYYYKSPPPPSPSPPPPYYYKSPPPPSPSP----PPPYY----------- 307
Query: 126 DSFGYEQWLSASSKPSLGEAQPYF------------PSYIPSTIPSPTSSVAAPIHWSS 172
+ PS PY+ P Y + P PTSS P H+ S
Sbjct: 308 --------YKSPPPPSPSPPPPYYYKSPPPPSPVSHPPYYYKSPPPPTSSPPPPYHYVS 460
Score = 33.9 bits (76), Expect = 0.075
Identities = 28/100 (28%), Positives = 34/100 (34%), Gaps = 6/100 (6%)
Frame = +2
Query: 12 YYSPPQPHSTLSPYAAAFSVNRPPFNDVSAP-FVDSDEPAYGVPPNPVHYPVHPRSYGYD 70
YY P P S P + PP P + S P PP P +Y P
Sbjct: 161 YYKSPPPPSPSPPPPYYYKSPPPPSPSPPPPYYYKSPPPPSPSPPPPYYYKSPP------ 322
Query: 71 FFPESDSVSKPYGYS-----GLASEDSFWYDQWPPTSSKP 105
P S S PY Y S ++Y PP +S P
Sbjct: 323 --PPSPSPPPPYYYKSPPPPSPVSHPPYYYKSPPPPTSSP 436
Score = 30.0 bits (66), Expect = 1.1
Identities = 20/55 (36%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Frame = +2
Query: 12 YYSPPQPHSTLSPYAAAFSVNRPPFNDVSAP--FVDSDEPAYGVPPNPVHYPVHP 64
YY P P S SP + + PP + VS P + S P PP P HY P
Sbjct: 305 YYKSPPPPSP-SPPPPYYYKSPPPPSPVSHPPYYYKSPPPPTSSPPPPYHYVSPP 466
Score = 28.1 bits (61), Expect = 4.1
Identities = 29/96 (30%), Positives = 34/96 (35%), Gaps = 4/96 (4%)
Frame = +2
Query: 14 SPPQPHSTLSPYAAAFSVNRPPFNDVSAPFVDSDEPAY----GVPPNPVHYPVHPRSYGY 69
SPP P+ SP + S P + P S P Y PP+PV HP Y
Sbjct: 239 SPPPPYYYKSPPPPSPSPPPPYYYKSPPPPSPSPPPPYYYKSPPPPSPVS---HPPYYYK 409
Query: 70 DFFPESDSVSKPYGYSGLASEDSFWYDQWPPTSSKP 105
P + S PY Y PPT S P
Sbjct: 410 SPPPPTSSPPPPYHY----------VSPPPPTKSPP 487
>TC224723 hydroxyproline-rich glycoprotein
Length = 2345
Score = 35.4 bits (80), Expect = 0.026
Identities = 43/171 (25%), Positives = 57/171 (33%), Gaps = 10/171 (5%)
Frame = +1
Query: 12 YYSPPQPHSTLSPYAAAFSVNRPPFNDVSAP-FVDSDEPAYGVPPNPVHYPVHPRSYGYD 70
Y+SPP P + P S PP P + S P PP P +Y P
Sbjct: 775 YHSPPPPKEHVHPPYYYHSPPPPPSPSPPPPYYYKSPPPPSPSPPPPYYYHSPP------ 936
Query: 71 FFPESDSVSKPYGY-----SGLASEDSFWYDQWPPTSSKPS----LAEPQPCFPDLNSMG 121
P S S PY Y + ++Y PP S P P P P
Sbjct: 937 --PPSPSPPPPYYYHSPPPPSPSPPSPYYYKSPPPPSPSPPPPYYYQSPPPPSP------ 1092
Query: 122 LASEDSFGYEQWLSASSKPSLGEAQPYFPSYIPSTIPSPTSSVAAPIHWSS 172
S + Y+ +S P P Y + P P+ S P H++S
Sbjct: 1093-TSHPPYYYKSPPPPTSYPP--------PPYHYVSPPPPSPSPPPPYHYTS 1218
Score = 35.4 bits (80), Expect = 0.026
Identities = 32/108 (29%), Positives = 39/108 (35%), Gaps = 14/108 (12%)
Frame = +1
Query: 12 YYSPPQPHSTLSPYAAAFSVNRPPFNDVSAP-FVDSDEPAYGVPPNPVHY-------PVH 63
Y+SPP P S P + PP P + S P PP P +Y P
Sbjct: 823 YHSPPPPPSPSPPPPYYYKSPPPPSPSPPPPYYYHSPPPPSPSPPPPYYYHSPPPPSPSP 1002
Query: 64 PRSYGYDF-FPESDSVSKPYGYS-----GLASEDSFWYDQWPPTSSKP 105
P Y Y P S S PY Y S ++Y PP +S P
Sbjct: 1003PSPYYYKSPPPPSPSPPPPYYYQSPPPPSPTSHPPYYYKSPPPPTSYP 1146
Score = 33.5 bits (75), Expect = 0.098
Identities = 43/168 (25%), Positives = 52/168 (30%), Gaps = 7/168 (4%)
Frame = +1
Query: 12 YYSPPQPHSTLSPYAAAFSVNRPPFNDVSAPFV--DSDEPAYGVPPNPVHYPVHPRSYGY 69
YY P P S P + PP V P+ P PP P +Y P
Sbjct: 724 YYKSPPPPSPSPPPPYYYHSPPPPKEHVHPPYYYHSPPPPPSPSPPPPYYYKSPP----- 888
Query: 70 DFFPESDSVSKPYGY-----SGLASEDSFWYDQWPPTSSKPSLAEPQPCFPDLNSMGLAS 124
P S S PY Y + ++Y PP S P P P + S
Sbjct: 889 ---PPSPSPPPPYYYHSPPPPSPSPPPPYYYHSPPPPSPSP----PSPYYYKSPPPPSPS 1047
Query: 125 EDSFGYEQWLSASSKPSLGEAQPYFPSYIPSTIPSPTSSVAAPIHWSS 172
Y Q S S P Y + P PTS P H+ S
Sbjct: 1048PPPPYYYQSPPPPSPTS-------HPPYYYKSPPPPTSYPPPPYHYVS 1170
Score = 29.3 bits (64), Expect = 1.9
Identities = 21/74 (28%), Positives = 24/74 (32%)
Frame = -3
Query: 12 YYSPPQPHSTLSPYAAAFSVNRPPFNDVSAPFVDSDEPAYGVPPNPVHYPVHPRSYGYDF 71
YY P P S P + PP P+ P P P HY P
Sbjct: 561 YYKSPPPPSPSPPPPYYYQSPPPPSPTPHPPYYYKSPPPPTSHPPPYHYVSPP------- 403
Query: 72 FPESDSVSKPYGYS 85
P S S PY Y+
Sbjct: 402 -PPSPSPPPPYHYT 364
>TC217852 weakly similar to UP|Q9FF85 (Q9FF85) Emb|CAB80929.1, partial (46%)
Length = 1112
Score = 35.4 bits (80), Expect = 0.026
Identities = 24/74 (32%), Positives = 31/74 (41%), Gaps = 5/74 (6%)
Frame = +1
Query: 25 YAAAFSVNRPPFN--DVS-APFVDSDEPAYGVPPNPVHYPVHPRSYGYDFFPESDSV--S 79
Y A N PP+ D S AP P YG PP +Y P Y Y+ P+ +
Sbjct: 442 YRAQGGYNAPPYGVRDYSPAPQGYGGYPPYGAPPQQAYYSAPPSGYPYNAPPQPYNAPPQ 621
Query: 80 KPYGYSGLASEDSF 93
YGY+ L S+
Sbjct: 622 SGYGYNALPQTASY 663
Score = 33.1 bits (74), Expect = 0.13
Identities = 25/85 (29%), Positives = 36/85 (41%), Gaps = 4/85 (4%)
Frame = +1
Query: 11 GYYSPPQPHSTLSPYAAAFSVNRPPFNDVSAPFVDSDEPA---YGVPPNPVHYPVHPRS- 66
GY +PP SP + PP+ S P+ Y PP P + P P+S
Sbjct: 457 GYNAPPYGVRDYSPAPQGYG-GYPPYGAPPQQAYYSAPPSGYPYNAPPQPYNAP--PQSG 627
Query: 67 YGYDFFPESDSVSKPYGYSGLASED 91
YGY+ P++ S + GY E+
Sbjct: 628 YGYNALPQTASYGQGSGYGYAPQEE 702
>TC204718 similar to GB|AAL84954.1|19310435|AY078954 F17H15.1/F17H15.1
{Arabidopsis thaliana;} , partial (5%)
Length = 1417
Score = 35.4 bits (80), Expect = 0.026
Identities = 52/200 (26%), Positives = 72/200 (36%), Gaps = 4/200 (2%)
Frame = +2
Query: 5 GSYNDWGYYSPPQPHSTLSPYAAAFSVNRPPFNDVSAPFVDSDEPAYGVPPNPVHYPVHP 64
GS D P QP S + + P + +A + +P YGVPP P
Sbjct: 461 GSQGDSTQAPPAQPPSQ------GYGTGQQPSPN-AANYAPQAQPGYGVPPTS-----QP 604
Query: 65 RSYGYDFFPESDSVSKPYGYSGLASEDSFWYDQWPPTSSKPSLAEP---QPCFPDLNSMG 121
+YG S+P SG S PP + KPS P Q P N+ G
Sbjct: 605 ATYG----------SQPPAQSGYGS------GYGPPQTQKPSGTPPVYGQSQSP--NTAG 730
Query: 122 LASEDSFGYEQWLSASSKPSLGEAQPYFPSYIPSTIPSPTSSVAAPIHWSSSSGFAPLDV 181
+ + + PS G AQP S PS P + S G AP
Sbjct: 731 GYGQSGHLQSGYPPSQPPPSGGYAQP--ESGSQKAPPSGYGGAVQPGYGPPSYGGAPAGG 904
Query: 182 VPSFGDY-AAENSSEFGFSG 200
P +G + ++S +G +G
Sbjct: 905 QPGYGQAPPSYSNSSYGAAG 964
>TC224573 homologue to UP|Q41707 (Q41707) Extensin class 1 protein precursor,
partial (44%)
Length = 1112
Score = 35.0 bits (79), Expect = 0.034
Identities = 49/197 (24%), Positives = 62/197 (30%), Gaps = 23/197 (11%)
Frame = +3
Query: 12 YYSPPQPHSTLSPYAAAFSVNRPPFNDVSAP---FVDSDEPAYGVPPNPVHY-------P 61
YY P P S P + PP D S P + S P PP P +Y P
Sbjct: 21 YYKSPPPPSPSPP--PPYYYKSPPPPDPSPPPPYYYKSPPPPSPSPPPPYYYKSPPPPSP 194
Query: 62 VHPRSYGYDFFPESD-SVSKPYGYSGLASED-----SFWYDQWPPTSSKP-------SLA 108
P Y Y P D S PY Y D ++Y PP S P S
Sbjct: 195 SPPPPYYYKSPPPPDPSPPPPYYYKSPPPPDPSPPPPYYYKSPPPPSPSPPPHYYYKSPP 374
Query: 109 EPQPCFPDLNSMGLASEDSFGYEQWLSASSKPSLGEAQPYFPSYIPSTIPSPTSSVAAPI 168
P P P + + PS PY+ P PSP P
Sbjct: 375 PPDPSPPP--------------PYYYRSPPPPSPSPPPPYYYKSPPPPSPSP----PPPY 500
Query: 169 HWSSSSGFAPLDVVPSF 185
++ S +P+ P +
Sbjct: 501 YYKSPPPPSPVSHPPYY 551
Score = 30.0 bits (66), Expect = 1.1
Identities = 27/94 (28%), Positives = 31/94 (32%)
Frame = +3
Query: 12 YYSPPQPHSTLSPYAAAFSVNRPPFNDVSAPFVDSDEPAYGVPPNPVHYPVHPRSYGYDF 71
YY P P S P + PP P+ P PP+PV HP Y
Sbjct: 405 YYRSPPPPSPSPPPPYYYKSPPPPSPSPPPPYYYKSPP----PPSPVS---HPPYYYKSP 563
Query: 72 FPESDSVSKPYGYSGLASEDSFWYDQWPPTSSKP 105
P + S PY Y PPT S P
Sbjct: 564 PPSTPSPPPPYQY----------VSPPPPTKSPP 635
>BM091938
Length = 421
Score = 34.7 bits (78), Expect = 0.044
Identities = 26/87 (29%), Positives = 32/87 (35%), Gaps = 14/87 (16%)
Frame = +2
Query: 12 YYSPPQPHSTLSPYAAAFSVNRP-------PFNDVSAPFVDSDEPA-------YGVPPNP 57
Y+SPP PH P+ + P P P+V P Y PP P
Sbjct: 104 YHSPPPPHPYPHPHPHPYPHPHPHPHPHPHPHPHPHPPYVYPSPPPPPKKPYKYPSPPPP 283
Query: 58 VHYPVHPRSYGYDFFPESDSVSKPYGY 84
VH+ HP + P S KPY Y
Sbjct: 284 VHHYPHPHPPFVHYSP-PPSPKKPYKY 361
Score = 28.1 bits (61), Expect = 4.1
Identities = 20/54 (37%), Positives = 21/54 (38%), Gaps = 1/54 (1%)
Frame = +2
Query: 12 YYSPPQP-HSTLSPYAAAFSVNRPPFNDVSAPFVDSDEPAYGVPPNPVHYPVHP 64
Y SPP P H P+ PPF S P Y PP PVH P P
Sbjct: 263 YPSPPPPVHHYPHPH--------PPFVHYSPPPSPKKPYKYPSPPPPVHPPYTP 400
>TC224546 similar to UP|Q41707 (Q41707) Extensin class 1 protein precursor,
partial (67%)
Length = 1240
Score = 34.7 bits (78), Expect = 0.044
Identities = 44/167 (26%), Positives = 54/167 (31%), Gaps = 6/167 (3%)
Frame = +3
Query: 12 YYSPPQPHSTLSPYAAAFSVNRPPFNDVSAP-FVDSDEPAYGVPPNPVHYPVHPRSYGYD 70
YY P P S P + PP V P + S P PP P +Y P
Sbjct: 435 YYKSPPPPSPSPPPPYYYHSPPPPKEHVHPPYYYHSPPPPSPSPPPPYYYKSPP------ 596
Query: 71 FFPESDSVSKPYGY-----SGLASEDSFWYDQWPPTSSKPSLAEPQPCFPDLNSMGLASE 125
P S S PY Y + ++Y PP S P P P + S
Sbjct: 597 --PPSPSPPPPYYYHSPPPPSPSPPPPYYYHSPPPPSPSP----PPPYYYKSPPPPSPSP 758
Query: 126 DSFGYEQWLSASSKPSLGEAQPYFPSYIPSTIPSPTSSVAAPIHWSS 172
Y Q P P+ P Y S P P +S P H+ S
Sbjct: 759 PPPYYYQ------SPPPPSPTPHPPYYYKS--PPPPTSHPPPYHYVS 875
Score = 34.3 bits (77), Expect = 0.058
Identities = 30/108 (27%), Positives = 37/108 (33%), Gaps = 14/108 (12%)
Frame = +3
Query: 12 YYSPPQPHSTLSPYAAAFSVNRPPFNDVSAP-FVDSDEPAYGVPPNPVHY--------PV 62
YY P P S P + PP P + S P PP P +Y V
Sbjct: 339 YYHSPPPPSPSPPPPYYYKSPPPPSPSPPPPYYYKSPPPPSPSPPPPYYYHSPPPPKEHV 518
Query: 63 HPRSYGYDFFPESDSVSKPYGYS-----GLASEDSFWYDQWPPTSSKP 105
HP Y + P S S PY Y + ++Y PP S P
Sbjct: 519 HPPYYYHSPPPPSPSPPPPYYYKSPPPPSPSPPPPYYYHSPPPPSPSP 662
Score = 32.3 bits (72), Expect = 0.22
Identities = 40/162 (24%), Positives = 53/162 (32%), Gaps = 13/162 (8%)
Frame = +3
Query: 12 YYSPPQPHSTLSPYAAAFSVNRPPFNDVSAP--FVDSDEPAYGVPPNPVHY-------PV 62
YY P P S + P + + PP + + P + S P PP P +Y P
Sbjct: 3 YYKSPPPPSPV-PKPPYYYQSPPPPSPIPKPPYYYHSPPPPSPSPPPPYYYKSPPPPSPS 179
Query: 63 HPRSYGYDFFPESDSVSKPYGYSGLASEDSFWYDQWPPTSSKPS----LAEPQPCFPDLN 118
P Y Y P V KP ++Y PP S P P P P
Sbjct: 180 PPPPYYYKSPPPPSPVPKP----------PYYYHSPPPPSPSPPPPYYYKSPPPPSP--- 320
Query: 119 SMGLASEDSFGYEQWLSASSKPSLGEAQPYFPSYIPSTIPSP 160
+ + Y + PS PY+ P PSP
Sbjct: 321 ----VPKPPYYYH----SPPPPSPSPPPPYYYKSPPPPSPSP 422
Score = 32.3 bits (72), Expect = 0.22
Identities = 37/154 (24%), Positives = 48/154 (31%), Gaps = 5/154 (3%)
Frame = +3
Query: 12 YYSPPQPHSTLSPYAAAFSVNRPPFNDVSAPFVDSDEPAYGVPPNPVHYPVHPRSYGYDF 71
YY P P S P + PP P+ P PP+PV P + Y +
Sbjct: 99 YYHSPPPPSPSPPPPYYYKSPPPPSPSPPPPYYYKSPP----PPSPVPKPPY---YYHSP 257
Query: 72 FPESDSVSKPYGYS-----GLASEDSFWYDQWPPTSSKPSLAEPQPCFPDLNSMGLASED 126
P S S PY Y + ++Y PP S P P P
Sbjct: 258 PPPSPSPPPPYYYKSPPPPSPVPKPPYYYHSPPPPSPSP----PPP-------------- 383
Query: 127 SFGYEQWLSASSKPSLGEAQPYFPSYIPSTIPSP 160
+ + PS PY+ P PSP
Sbjct: 384 -----YYYKSPPPPSPSPPPPYYYKSPPPPSPSP 470
Score = 29.3 bits (64), Expect = 1.9
Identities = 38/162 (23%), Positives = 49/162 (29%), Gaps = 15/162 (9%)
Frame = +3
Query: 14 SPPQPHSTLSPYAAAFSVNRPPFNDVSAPFVDSDEPAYGVPPNPVHYPVHPRSYGYDFFP 73
SPP P+ SP + S P + P +P Y P P P Y Y P
Sbjct: 129 SPPPPYYYKSPPPPSPSPPPPYYYKSPPPPSPVPKPPYYYHSPPPPSPSPPPPYYYKSPP 308
Query: 74 ESDSVSKPYGYSGLASEDS------FWYDQWPPTS---------SKPSLAEPQPCFPDLN 118
V KP Y S ++Y PP S P P P P
Sbjct: 309 PPSPVPKPPYYYHSPPPPSPSPPPPYYYKSPPPPSPSPPPPYYYKSPPPPSPSPPPPYYY 488
Query: 119 SMGLASEDSFGYEQWLSASSKPSLGEAQPYFPSYIPSTIPSP 160
++ + + PS PY+ P PSP
Sbjct: 489 HSPPPPKEHVHPPYYYHSPPPPSPSPPPPYYYKSPPPPSPSP 614
Score = 29.3 bits (64), Expect = 1.9
Identities = 21/74 (28%), Positives = 24/74 (32%)
Frame = +3
Query: 12 YYSPPQPHSTLSPYAAAFSVNRPPFNDVSAPFVDSDEPAYGVPPNPVHYPVHPRSYGYDF 71
YY P P S P + PP P+ P P P HY P
Sbjct: 723 YYKSPPPPSPSPPPPYYYQSPPPPSPTPHPPYYYKSPPPPTSHPPPYHYVSPP------- 881
Query: 72 FPESDSVSKPYGYS 85
P S S PY Y+
Sbjct: 882 -PPSPSPPPPYHYT 920
>TC224753 homologue to UP|Q09085 (Q09085) Hydroxyproline-rich glycoprotein
(HRGP) (Fragment), partial (48%)
Length = 1088
Score = 34.7 bits (78), Expect = 0.044
Identities = 44/176 (25%), Positives = 58/176 (32%), Gaps = 18/176 (10%)
Frame = +2
Query: 15 PPQPHSTLSPYAAAFSVNRPPFNDVSAPFVDSDEPAYGVPPNPVHYPVHPRSYGYDFFPE 74
PP P+ SP PP + P + +P Y P P P Y Y P
Sbjct: 56 PPPPYEYKSP---------PPPSPSPPPPYEHKDPHYQYKSPPPPSPSPPPPYNYKSPPP 208
Query: 75 -SDSVSKPYGYSGL-----ASEDSFWYDQWPPTSSKPSLAEPQPCFPDLNSMGLASEDSF 128
S S PY Y + ++Y PP PS A P P + + S
Sbjct: 209 PSPSPPPPYYYKSPPPPSPSPPPPYYYKSPPP----PSPAPPPPYY---YKSPPPPDPSP 367
Query: 129 GYEQWLSASSKPSLGEAQPYF------------PSYIPSTIPSPTSSVAAPIHWSS 172
+ + PS PY+ P Y + P PTSS P H+ S
Sbjct: 368 PPPYYYKSPPPPSPSPPPPYYYKSPPPPSPVSHPPYYYKSPPPPTSSPPPPYHYVS 535
Score = 32.7 bits (73), Expect = 0.17
Identities = 29/101 (28%), Positives = 37/101 (35%), Gaps = 7/101 (6%)
Frame = +2
Query: 12 YYSPPQPHSTLSPYAAAFSVNRPPFNDVSAP--FVDSDEPAYGVPPNPVHYPVHPRSYGY 69
YY P P S SP + + PP + P + S P PP P +Y P
Sbjct: 236 YYKSPPPPSP-SPPPPYYYKSPPPPSPAPPPPYYYKSPPPPDPSPPPPYYYKSPP----- 397
Query: 70 DFFPESDSVSKPYGYS-----GLASEDSFWYDQWPPTSSKP 105
P S S PY Y S ++Y PP +S P
Sbjct: 398 ---PPSPSPPPPYYYKSPPPPSPVSHPPYYYKSPPPPTSSP 511
Score = 32.0 bits (71), Expect = 0.29
Identities = 39/160 (24%), Positives = 51/160 (31%), Gaps = 4/160 (2%)
Frame = +2
Query: 14 SPPQPHSTLSPYAAAFSVNRPPFNDVSAPFVDSDEPAYGVPPNPVHYPVHPRSYGYDFFP 73
SPP P++ SP + S P + P S P Y P P P Y Y P
Sbjct: 170 SPPPPYNYKSPPPPSPSPPPPYYYKSPPPPSPSPPPPYYYKSPPPPSPAPPPPYYYKSPP 349
Query: 74 ESDSVSKPYGYSGLASEDSFWYDQWPPTSSKPS----LAEPQPCFPDLNSMGLASEDSFG 129
D P ++Y PP S P P P P S +
Sbjct: 350 PPDPSPPP----------PYYYKSPPPPSPSPPPPYYYKSPPPPSP-------VSHPPYY 478
Query: 130 YEQWLSASSKPSLGEAQPYFPSYIPSTIPSPTSSVAAPIH 169
Y+ +S P P Y + P PT S P++
Sbjct: 479 YKSPPPPTSSPP--------PPYHYVSPPPPTKSPPPPVY 574
Score = 30.0 bits (66), Expect = 1.1
Identities = 20/55 (36%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Frame = +2
Query: 12 YYSPPQPHSTLSPYAAAFSVNRPPFNDVSAP--FVDSDEPAYGVPPNPVHYPVHP 64
YY P P S SP + + PP + VS P + S P PP P HY P
Sbjct: 380 YYKSPPPPSP-SPPPPYYYKSPPPPSPVSHPPYYYKSPPPPTSSPPPPYHYVSPP 541
>BU549122
Length = 670
Score = 27.3 bits (59), Expect(2) = 0.054
Identities = 14/50 (28%), Positives = 20/50 (40%)
Frame = +1
Query: 14 SPPQPHSTLSPYAAAFSVNRPPFNDVSAPFVDSDEPAYGVPPNPVHYPVH 63
+PPQPH + + AA S+ P + P P P P+H
Sbjct: 124 TPPQPHLPATLHEAALSLQLPKRRRIGGDPSSGTSPTSTGPLGPRQAPLH 273
Score = 25.8 bits (55), Expect(2) = 0.054
Identities = 30/116 (25%), Positives = 44/116 (37%), Gaps = 9/116 (7%)
Frame = +3
Query: 101 TSSKPSLAEPQPCFPDLNSMGLASEDSFGYEQWLSASSK---------PSLGEAQPYFPS 151
TSS P + P P +S L++ F S +S+ PSL ++ S
Sbjct: 258 TSSTPFSSTPHPSPLTTSSKSLSNYLPFPNPSNFSNTSQQKPHNTIPIPSLPSSRALLSS 437
Query: 152 YIPSTIPSPTSSVAAPIHWSSSSGFAPLDVVPSFGDYAAENSSEFGFSGLGAGSWN 207
+ + IP PT S S++S P + PS N F S L W+
Sbjct: 438 LLDTPIPKPTFSA------STASENPPTPLSPSL-----PNPLRFSCSALKMRDWS 572
>TC204052 homologue to UP|Q39835 (Q39835) Extensin, partial (67%)
Length = 1083
Score = 34.3 bits (77), Expect = 0.058
Identities = 30/100 (30%), Positives = 38/100 (38%), Gaps = 6/100 (6%)
Frame = +3
Query: 12 YYSPPQP-HSTLSPYAAAFSVNRPPFNDVSAPFVDSDEPAYGVPPNPVHYPVHPRSYGYD 70
Y+SPP P HS PY + PP + P+ Y PP P H P P Y +
Sbjct: 315 YHSPPPPKHSPPPPY--YYHSPPPPKHSPPPPYY------YHSPPPPKHSPPPPYYY-HS 467
Query: 71 FFPESDSVSKPYGYSGL-----ASEDSFWYDQWPPTSSKP 105
P S PY Y L + ++Y PP P
Sbjct: 468 PPPPKHSPPPPYYYHSLPPPKHSPPPPYYYHSPPPPKHSP 587
Score = 31.6 bits (70), Expect = 0.37
Identities = 29/100 (29%), Positives = 37/100 (37%), Gaps = 6/100 (6%)
Frame = +3
Query: 12 YYSPPQP-HSTLSPYAAAFSVNRPPFNDVSAPFVDSDEPAYGVPPNPVHYPVHPRSYGYD 70
Y+SPP P HS PY + PP + P+ Y PP P H P P Y +
Sbjct: 171 YHSPPPPKHSPPPPY--YYHSPPPPKHSPPPPYY------YHSPPPPKHSPPPPYYY-HS 323
Query: 71 FFPESDSVSKPYGYSG-----LASEDSFWYDQWPPTSSKP 105
P S PY Y + ++Y PP P
Sbjct: 324 PPPPKHSPPPPYYYHSPPPPKHSPPPPYYYHSPPPPKHSP 443
Score = 30.0 bits (66), Expect = 1.1
Identities = 25/74 (33%), Positives = 30/74 (39%), Gaps = 1/74 (1%)
Frame = +3
Query: 12 YYSPPQP-HSTLSPYAAAFSVNRPPFNDVSAPFVDSDEPAYGVPPNPVHYPVHPRSYGYD 70
Y+SPP P HS PY + PP + P+ Y PP P H P P Y +
Sbjct: 459 YHSPPPPKHSPPPPY--YYHSLPPPKHSPPPPYY------YHSPPPPKHSPPPPYYY-HS 611
Query: 71 FFPESDSVSKPYGY 84
P S PY Y
Sbjct: 612 PPPPKHSPPPPYYY 653
Score = 27.7 bits (60), Expect = 5.4
Identities = 17/53 (32%), Positives = 19/53 (35%)
Frame = +1
Query: 12 YYSPPQPHSTLSPYAAAFSVNRPPFNDVSAPFVDSDEPAYGVPPNPVHYPVHP 64
Y SPP P+ SP + PP Y PP PVH P P
Sbjct: 769 YKSPPPPYKYPSPPPPPYKYPSPPPPVYKYKSPPPPVYKYKSPPPPVHSPPPP 927
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.312 0.132 0.413
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,601,993
Number of Sequences: 63676
Number of extensions: 267563
Number of successful extensions: 1996
Number of sequences better than 10.0: 177
Number of HSP's better than 10.0 without gapping: 1704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1876
length of query: 258
length of database: 12,639,632
effective HSP length: 95
effective length of query: 163
effective length of database: 6,590,412
effective search space: 1074237156
effective search space used: 1074237156
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 58 (26.9 bits)
Lotus: description of TM0207.8