TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0206b.5
         (199 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC212179                                                               76  9e-15
TC233466 similar to UP|Q6I8M7 (Q6I8M7) Soybean Tgm5 transposable...    72  2e-13
BI425208                                                               56  1e-08
TC210753 similar to UP|Q9SAF1 (Q9SAF1) F3F19.20 protein (Actin-r...    32  0.25
TC221154                                                               30  0.56
CO985451                                                               30  0.96
TC221417                                                               29  1.3
TC209016 similar to UP|Q7XZT4 (Q7XZT4) RPA 32kDa, complete             28  3.6
TC230082 similar to UP|Q9XEJ7 (Q9XEJ7) Galactinol synthase (Frag...    27  4.8
BM528415                                                               27  8.1
TC215825 homologue to UP|Q40213 (Q40213) RAB7C, complete               27  8.1

>TC212179 
          Length = 764

 Score = 76.3 bits (186), Expect = 9e-15
 Identities = 38/96 (39%), Positives = 55/96 (56%), Gaps = 4/96 (4%)
 Frame = +1

Query: 3   LKAMDKSWIEMPRNTMAYEEGVKRFIDFAFERSSIE--GKIICPCPRCEFRKRQTRDEVY 60
           L  MD+SW+   R +  YEEGV++F+ FA +R   +  GK  CPC  C   +RQ  D++ 
Sbjct: 22  LLQMDRSWMNQSRISPEYEEGVEQFLQFASQRGQPDEDGKYYCPCINCLNGRRQILDDIR 201

Query: 61  DHLICKQLPKGYTFWFDHGE--TMNNSPQNVPNSVE 94
           +HL+C  + + YT W  HGE   M +  Q+ P  VE
Sbjct: 202 EHLLCDGIKRNYTTWIWHGEMTDMQSGQQSEPFDVE 309


>TC233466 similar to UP|Q6I8M7 (Q6I8M7) Soybean Tgm5 transposable element
           (Fragment), partial (37%)
          Length = 790

 Score = 71.6 bits (174), Expect = 2e-13
 Identities = 50/145 (34%), Positives = 70/145 (47%), Gaps = 5/145 (3%)
 Frame = +3

Query: 21  EEGVKRFIDFAFERSSIE--GKIICPCPRCEFRKRQTRDEVYDHLICKQLPKGYTFWFDH 78
           EEGV++F+  A ERS  +  GK  CPC  C   +RQ  +++ DHL+C ++ + YT W  H
Sbjct: 6   EEGVEQFLQLASERSRPDENGKFFCPCINCLNGRRQKVNDIRDHLLCDEIKRNYTTWIWH 185

Query: 79  GE--TMNNSPQNVPNSVEQTMVDEDPIQNMINGAFGVDMHHGEESNEDVPDGEGVIPDAT 136
           GE   M + PQ+ P  VE     ED I+++           G+ES               
Sbjct: 186 GEMADMQSGPQSEPFDVEMRDRLEDMIRDL-----------GQES--------------F 290

Query: 137 QERHETRDFYD-LARDGEQPLYEGC 160
           Q+ H     YD L  D + PLY GC
Sbjct: 291 QQAH--APMYDTLQIDSKTPLYPGC 359


>BI425208 
          Length = 413

 Score = 55.8 bits (133), Expect = 1e-08
 Identities = 26/80 (32%), Positives = 44/80 (54%), Gaps = 1/80 (1%)
 Frame = -3

Query: 3   LKAMDKSWIEMP-RNTMAYEEGVKRFIDFAFERSSIEGKIICPCPRCEFRKRQTRDEVYD 61
           +   +K WI++  + ++ Y +G+  F++F+F  S  +  I CPC RC     +TRDEV  
Sbjct: 240 MNKQNKGWIKLNIQASIEYLKGINDFLEFSFSYSKNKNTIRCPCCRCNAIYYKTRDEVIG 61

Query: 62  HLICKQLPKGYTFWFDHGET 81
            L+  +  + Y  W  HGE+
Sbjct: 60  DLLKSRFQQNYEHWESHGES 1


>TC210753 similar to UP|Q9SAF1 (Q9SAF1) F3F19.20 protein (Actin-related
           protein 3) (At1g13180), partial (8%)
          Length = 1210

 Score = 31.6 bits (70), Expect = 0.25
 Identities = 13/32 (40%), Positives = 18/32 (55%)
 Frame = +3

Query: 52  KRQTRDEVYDHLICKQLPKGYTFWFDHGETMN 83
           +RQT  ++  HLIC  +   Y  W  HGE+ N
Sbjct: 279 RRQTVKDIRSHLICDGIVPTYIKWI*HGESSN 374


>TC221154 
          Length = 692

 Score = 30.4 bits (67), Expect = 0.56
 Identities = 18/75 (24%), Positives = 30/75 (40%)
 Frame = +3

Query: 42  ICPCPRCEFRKRQTRDEVYDHLICKQLPKGYTFWFDHGETMNNSPQNVPNSVEQTMVDED 101
           +C C  C + K     E   H  CK        +F++G+T+    Q + ++ E  + D  
Sbjct: 36  LCGCQSCNYTKVLNAYEFERHAGCKTKHPNNHIYFENGKTIYQIVQELRSTPESLLFD-- 209

Query: 102 PIQNMINGAFGVDMH 116
                I   FG  +H
Sbjct: 210 ----TIQTVFGAPIH 242


>CO985451 
          Length = 844

 Score = 29.6 bits (65), Expect = 0.96
 Identities = 18/63 (28%), Positives = 28/63 (43%), Gaps = 7/63 (11%)
 Frame = -3

Query: 42  ICPCPRCEFRKRQTRDEVYDHLICKQLPKGYTFWFDHGET-------MNNSPQNVPNSVE 94
           +C C  C F K     E   H  CK        +FD+G+T       + ++PQ++   V 
Sbjct: 503 LCSCHSCNFSKVINAFEFERHAGCKTKHPNNHIYFDNGKTIYGVVQELRSTPQSMLFEVI 324

Query: 95  QTM 97
           QT+
Sbjct: 323 QTI 315


>TC221417 
          Length = 848

 Score = 29.3 bits (64), Expect = 1.3
 Identities = 17/67 (25%), Positives = 29/67 (42%), Gaps = 1/67 (1%)
 Frame = +1

Query: 34  RSSIEGK-IICPCPRCEFRKRQTRDEVYDHLICKQLPKGYTFWFDHGETMNNSPQNVPNS 92
           R  I+G   +C C  C + K     E   H  CK        +F++G+T+    Q + ++
Sbjct: 364 RGIIKGSGYLCGCQSCNYTKVLNAYEFERHAGCKTKHPNNHIYFENGKTIYQIVQELRST 543

Query: 93  VEQTMVD 99
            E  + D
Sbjct: 544 PESLLFD 564


>TC209016 similar to UP|Q7XZT4 (Q7XZT4) RPA 32kDa, complete
          Length = 990

 Score = 27.7 bits (60), Expect = 3.6
 Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
 Frame = +1

Query: 57  DEVYDHLICKQLPKGYTFWF-DHGETMNNSPQNVPNSVEQTMVDEDPIQNMINGAFGVD- 114
           D +++HL  K   +G T      G ++N   ++ PN  +    +    Q+ ++G  G+D 
Sbjct: 526 DCIHNHLRSKIKMEGITSSNPSSGSSLNTPGKSAPNGSQAPSSNPVSAQHSVDGLKGIDK 705

Query: 115 -MHHGEESNEDVPDGEGVIPD 134
            +    E + D+ DG G+  D
Sbjct: 706 LIMDYLEQHSDMSDGRGIHVD 768


>TC230082 similar to UP|Q9XEJ7 (Q9XEJ7) Galactinol synthase (Fragment),
           partial (39%)
          Length = 647

 Score = 27.3 bits (59), Expect = 4.8
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -1

Query: 47  RCEFRKRQTRDEVYDHLICKQLPKGYTFW 75
           +C     ++ D + +HL+ +Q PKG  FW
Sbjct: 350 QCNLGI*ESHDVLQEHLVTQQPPKGTCFW 264


>BM528415 
          Length = 427

 Score = 26.6 bits (57), Expect = 8.1
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -1

Query: 49  EFRKRQTRDEVYDHLICKQLPKGY 72
           +F+K Q  ++VY H +CKQ+   Y
Sbjct: 391 KFKKAQHNEQVYLHNVCKQVNHKY 320


>TC215825 homologue to UP|Q40213 (Q40213) RAB7C, complete
          Length = 1025

 Score = 26.6 bits (57), Expect = 8.1
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -2

Query: 33  ERSSIEGKIICPCPRCEFRKRQTRDEVY 60
           + SS  G+  C C RC+ RK++ + + Y
Sbjct: 148 QESSSSGRHDCGCERCDRRKKEKKRKSY 65


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.320    0.138    0.427 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,624,678
Number of Sequences: 63676
Number of extensions: 134685
Number of successful extensions: 577
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 572
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 575
length of query: 199
length of database: 12,639,632
effective HSP length: 92
effective length of query: 107
effective length of database: 6,781,440
effective search space: 725614080
effective search space used: 725614080
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)