BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0206b.2
(121 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC227375 similar to PIR|T52589|T52589 ribose-phosphate diphospho... 84 4e-21
BF009928 weakly similar to PIR|T52589|T52 ribose-phosphate dipho... 54 8e-09
BM085907 similar to GP|4902877|emb| phosphoribosyl pyrophosphate... 52 5e-08
TC218652 homologue to UP|Q9FGV7 (Q9FGV7) Gb|AAD10675.1, partial ... 27 1.3
TC206451 27 1.7
BE660484 homologue to GP|11022864|gb photosystem II D2 protein {... 26 3.0
TC205619 similar to GB|AAL60196.1|18139887|AF441079 O-linked N-a... 25 3.9
AW756568 25 3.9
TC229662 similar to UP|Q941D5 (Q941D5) At1g03950/F21M11_12, comp... 25 3.9
TC226864 similar to UP|Q43382 (Q43382) PSI type II chlorophyll a... 25 6.6
BI971363 25 6.6
TC224919 similar to UP|O04945 (O04945) Enoyl-ACP reductase precu... 25 6.6
TC203684 weakly similar to UP|Q7Q8B1 (Q7Q8B1) EbiP5126 (Fragment... 24 8.6
>TC227375 similar to PIR|T52589|T52589 ribose-phosphate diphosphokinase
[imported] - Arabidopsis thaliana {Arabidopsis
thaliana;} , partial (93%)
Length = 1334
Score = 83.6 bits (205), Expect(2) = 4e-21
Identities = 46/62 (74%), Positives = 48/62 (77%), Gaps = 1/62 (1%)
Frame = +1
Query: 61 FLAQLSSPTQGFEQFTAIYALHCLFVASFALVPPFFPTGSFE-*KEEGDVTTAFTLARML 119
FLA SSP FEQ + IYAL LFVASF LV PFFPTGSFE +EEGDV TAFTLARML
Sbjct: 355 FLASFSSPAHVFEQLSVIYALPRLFVASFTLVLPFFPTGSFERMEEEGDVATAFTLARML 534
Query: 120 SN 121
SN
Sbjct: 535 SN 540
Score = 32.0 bits (71), Expect(2) = 4e-21
Identities = 15/29 (51%), Positives = 18/29 (61%)
Frame = +3
Query: 40 C**VSKSMYE*CRRVVW*TCCFLAQLSSP 68
C* +SK +Y+*CRR TCCFL P
Sbjct: 291 C*WISKYIYK*CRRTSRSTCCFLGIFQLP 377
>BF009928 weakly similar to PIR|T52589|T52 ribose-phosphate diphosphokinase
(EC 2.7.6.1) [imported] - Arabidopsis thaliana, partial
(34%)
Length = 424
Score = 54.3 bits (129), Expect = 8e-09
Identities = 30/62 (48%), Positives = 39/62 (62%), Gaps = 1/62 (1%)
Frame = +2
Query: 61 FLAQLSSPTQGFEQFTAIYALHCLFVASFALVPPFFPTGSF-E*KEEGDVTTAFTLARML 119
FLA SSPT F+Q + IY L LF+ SF LV PFF T SF + ++E D+ TL +L
Sbjct: 164 FLASFSSPTHIFKQLSIIYTLPHLFITSFTLVLPFFATKSFKQIRKEEDIAATLTLT*IL 343
Query: 120 SN 121
+N
Sbjct: 344 AN 349
>BM085907 similar to GP|4902877|emb| phosphoribosyl pyrophosphate synthase
isozyme 3 {Spinacia oleracea}, partial (23%)
Length = 427
Score = 51.6 bits (122), Expect = 5e-08
Identities = 26/40 (65%), Positives = 28/40 (70%)
Frame = +3
Query: 61 FLAQLSSPTQGFEQFTAIYALHCLFVASFALVPPFFPTGS 100
FLA SSP FEQ IYAL LF+ASF LV PFFPTG+
Sbjct: 306 FLASFSSPAVIFEQIPVIYALPKLFIASFTLVLPFFPTGT 425
>TC218652 homologue to UP|Q9FGV7 (Q9FGV7) Gb|AAD10675.1, partial (87%)
Length = 925
Score = 26.9 bits (58), Expect = 1.3
Identities = 10/15 (66%), Positives = 12/15 (79%)
Frame = -3
Query: 83 CLFVASFALVPPFFP 97
CLF+A+ ALV PF P
Sbjct: 431 CLFIATIALVAPFIP 387
>TC206451
Length = 1035
Score = 26.6 bits (57), Expect = 1.7
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 6/45 (13%)
Frame = -1
Query: 51 CRRVVW*TCCF------LAQLSSPTQGFEQFTAIYALHCLFVASF 89
CR V W C + L S+PT G AI +CLF++ F
Sbjct: 165 CRHVAWCWCSYLWFCSVLFLASNPTPG--NLPAINPFNCLFLSQF 37
>BE660484 homologue to GP|11022864|gb photosystem II D2 protein {Acorus
calamus}, partial (66%)
Length = 723
Score = 25.8 bits (55), Expect = 3.0
Identities = 13/50 (26%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = +2
Query: 50 *CRRVVW*TCCFLAQLSSPTQGFEQFTAIYALHC--LFVASFALVPPFFP 97
*C R++W CCF + + G +++ + C + +S+ + P FP
Sbjct: 14 *CNRILWSNCCFCFCIPYLSTG-----SVWLVLCS*FWCSSYISIHPLFP 148
>TC205619 similar to GB|AAL60196.1|18139887|AF441079 O-linked N-acetyl
glucosamine transferase {Arabidopsis thaliana;} ,
partial (45%)
Length = 1566
Score = 25.4 bits (54), Expect = 3.9
Identities = 12/29 (41%), Positives = 14/29 (47%)
Frame = +2
Query: 79 YALHCLFVASFALVPPFFPTGSFE*KEEG 107
YA HC +AS +PPF K EG
Sbjct: 68 YAAHCSVIASRFALPPFNHPSPIPIKREG 154
>AW756568
Length = 481
Score = 25.4 bits (54), Expect = 3.9
Identities = 11/19 (57%), Positives = 14/19 (72%)
Frame = -2
Query: 84 LFVASFALVPPFFPTGSFE 102
LF+A+ ALV PF PT + E
Sbjct: 321 LFIAAIALVAPFKPTATEE 265
>TC229662 similar to UP|Q941D5 (Q941D5) At1g03950/F21M11_12, complete
Length = 872
Score = 25.4 bits (54), Expect = 3.9
Identities = 11/19 (57%), Positives = 14/19 (72%)
Frame = -1
Query: 84 LFVASFALVPPFFPTGSFE 102
LF+A+ ALV PF PT + E
Sbjct: 425 LFIAAIALVAPFKPTATEE 369
>TC226864 similar to UP|Q43382 (Q43382) PSI type II chlorophyll a/b-binding
protein, partial (42%)
Length = 574
Score = 24.6 bits (52), Expect = 6.6
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +3
Query: 60 CFLAQLSSPTQGFEQFTAIYALHCLFVASFALVPP 94
CFL Q+ TQGF+ F I + +F +SF + P
Sbjct: 459 CFLIQVLQLTQGFDFFKQI-RITIVFFSSF*IKRP 560
>BI971363
Length = 610
Score = 24.6 bits (52), Expect = 6.6
Identities = 10/16 (62%), Positives = 12/16 (74%)
Frame = +2
Query: 71 GFEQFTAIYALHCLFV 86
GFEQFT++ LH L V
Sbjct: 176 GFEQFTSVELLHILVV 223
>TC224919 similar to UP|O04945 (O04945) Enoyl-ACP reductase precursor ,
partial (89%)
Length = 1597
Score = 24.6 bits (52), Expect = 6.6
Identities = 10/22 (45%), Positives = 13/22 (58%)
Frame = +2
Query: 77 AIYALHCLFVASFALVPPFFPT 98
AI+ HC +S + P FFPT
Sbjct: 1277 AIFLFHCS*PSSSSATPTFFPT 1342
>TC203684 weakly similar to UP|Q7Q8B1 (Q7Q8B1) EbiP5126 (Fragment), partial
(49%)
Length = 1062
Score = 24.3 bits (51), Expect = 8.6
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 9/49 (18%)
Frame = +3
Query: 54 VVW*TCCFLAQLSSPTQGFEQFTAIYALHC---------LFVASFALVP 93
+VW +CCFL + +S A+HC L +ASF+ P
Sbjct: 39 LVWPSCCFLMKKAS------------AMHCALLRFWVPLLLLASFSFAP 149
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.370 0.164 0.657
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,298,714
Number of Sequences: 63676
Number of extensions: 91602
Number of successful extensions: 1148
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 1142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1147
length of query: 121
length of database: 12,639,632
effective HSP length: 97
effective length of query: 24
effective length of database: 6,463,060
effective search space: 155113440
effective search space used: 155113440
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 14 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 36 (21.8 bits)
S2: 51 (24.3 bits)
Lotus: description of TM0206b.2