BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0206b.1
(35 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC214788 similar to UP|CYP4_ARATH (P34791) Peptidyl-prolyl cis-t... 60 3e-10
TC215230 similar to UP|Q9SP02 (Q9SP02) Cyclophilin ROC7 (AT5g587... 57 2e-09
TC215231 similar to UP|O22515 (O22515) Cyclophilin , partial (75%) 57 2e-09
BU091098 similar to SP|Q41651|CYPB_ Peptidyl-prolyl cis-trans is... 55 6e-09
TC209947 homologue to UP|Q8W435 (Q8W435) CYP1, partial (74%) 55 6e-09
BU547493 homologue to GP|18146786|db CYP1 {Vigna radiata}, parti... 55 6e-09
TC224956 homologue to UP|Q8W171 (Q8W171) Cyclophilin, partial (55%) 54 1e-08
TC224951 similar to GB|CAA39819.1|20900|PSSODII Cu/Zn superoxide... 54 1e-08
TC214808 homologue to UP|Q8W171 (Q8W171) Cyclophilin, complete 54 1e-08
TC224926 homologue to UP|Q41119 (Q41119) Cyclophilin , complete 54 1e-08
TC205207 similar to UP|TL20_ARATH (Q9ASS6) Peptidyl-prolyl cis-t... 54 2e-08
TC224897 similar to UP|Q40672 (Q40672) Cyclophilin 1 , partial (... 52 7e-08
TC217669 similar to UP|Q9SP02 (Q9SP02) Cyclophilin ROC7 (AT5g587... 50 3e-07
TC217668 similar to UP|O80876 (O80876) Cyclophilin , partial (87%) 50 3e-07
TC231120 similar to UP|Q93VG0 (Q93VG0) Cyclophilin, complete 50 4e-07
TC210153 similar to UP|Q6Q150 (Q6Q150) Multidomain cyclophilin t... 50 4e-07
TC224944 similar to UP|Q40672 (Q40672) Cyclophilin 1 , partial (... 49 6e-07
BQ610122 similar to EGAD|127027|1354 cyclophilin {Entamoeba hist... 49 8e-07
TC219332 similar to UP|Q9C566 (Q9C566) Cyclophilin-40 (Expressed... 48 1e-06
BG352786 similar to GP|4454307|emb cyclophilin {Pseudotsuga menz... 48 1e-06
>TC214788 similar to UP|CYP4_ARATH (P34791) Peptidyl-prolyl cis-trans
isomerase, chloroplast precursor (PPIase) (Rotamase)
(Cyclophilin) (Cyclosporin A-binding protein) , partial
(66%)
Length = 1076
Score = 59.7 bits (143), Expect = 3e-10
Identities = 27/30 (90%), Positives = 28/30 (93%)
Frame = +3
Query: 6 FVVKHVGPGVLSMANAGPNTNGSQFFISTV 35
F +KHVGPGVLSMANAGPNTNGSQFFI TV
Sbjct: 603 FALKHVGPGVLSMANAGPNTNGSQFFICTV 692
>TC215230 similar to UP|Q9SP02 (Q9SP02) Cyclophilin ROC7 (AT5g58710/mzn1_160)
, partial (97%)
Length = 1021
Score = 57.0 bits (136), Expect = 2e-09
Identities = 25/30 (83%), Positives = 28/30 (93%)
Frame = +3
Query: 6 FVVKHVGPGVLSMANAGPNTNGSQFFISTV 35
F +KH GPG+LSMANAGPNTNGSQFFI+TV
Sbjct: 447 FKLKHTGPGLLSMANAGPNTNGSQFFITTV 536
>TC215231 similar to UP|O22515 (O22515) Cyclophilin , partial (75%)
Length = 867
Score = 57.0 bits (136), Expect = 2e-09
Identities = 25/30 (83%), Positives = 28/30 (93%)
Frame = +1
Query: 6 FVVKHVGPGVLSMANAGPNTNGSQFFISTV 35
F +KH GPG+LSMANAGPNTNGSQFFI+TV
Sbjct: 229 FKLKHTGPGLLSMANAGPNTNGSQFFITTV 318
>BU091098 similar to SP|Q41651|CYPB_ Peptidyl-prolyl cis-trans isomerase
chloroplast precursor (EC 5.2.1.8) (PPIase) (Rotamase),
partial (31%)
Length = 238
Score = 55.5 bits (132), Expect = 6e-09
Identities = 26/30 (86%), Positives = 27/30 (89%)
Frame = +3
Query: 6 FVVKHVGPGVLSMANAGPNTNGSQFFISTV 35
F +KHVGPGVLSMANAG NTNGSQFFI TV
Sbjct: 63 FNLKHVGPGVLSMANAGTNTNGSQFFICTV 152
>TC209947 homologue to UP|Q8W435 (Q8W435) CYP1, partial (74%)
Length = 434
Score = 55.5 bits (132), Expect = 6e-09
Identities = 24/30 (80%), Positives = 26/30 (86%)
Frame = +2
Query: 6 FVVKHVGPGVLSMANAGPNTNGSQFFISTV 35
F+ KH GPG+LSMANAGP TNGSQFFI TV
Sbjct: 332 FIKKHTGPGILSMANAGPGTNGSQFFICTV 421
>BU547493 homologue to GP|18146786|db CYP1 {Vigna radiata}, partial (85%)
Length = 660
Score = 55.5 bits (132), Expect = 6e-09
Identities = 24/30 (80%), Positives = 26/30 (86%)
Frame = -3
Query: 6 FVVKHVGPGVLSMANAGPNTNGSQFFISTV 35
F+ KH GPG+LSMANAGP TNGSQFFI TV
Sbjct: 451 FIKKHTGPGILSMANAGPGTNGSQFFICTV 362
>TC224956 homologue to UP|Q8W171 (Q8W171) Cyclophilin, partial (55%)
Length = 656
Score = 54.3 bits (129), Expect = 1e-08
Identities = 24/29 (82%), Positives = 25/29 (85%)
Frame = -1
Query: 6 FVVKHVGPGVLSMANAGPNTNGSQFFIST 34
FV KH GPG+LSMANAGP TNGSQFFI T
Sbjct: 287 FVKKHTGPGILSMANAGPGTNGSQFFICT 201
>TC224951 similar to GB|CAA39819.1|20900|PSSODII Cu/Zn superoxide dismutase
II {Pisum sativum;} , partial (68%)
Length = 901
Score = 54.3 bits (129), Expect = 1e-08
Identities = 24/29 (82%), Positives = 25/29 (85%)
Frame = -2
Query: 6 FVVKHVGPGVLSMANAGPNTNGSQFFIST 34
FV KH GPG+LSMANAGP TNGSQFFI T
Sbjct: 267 FVKKHTGPGILSMANAGPGTNGSQFFICT 181
>TC214808 homologue to UP|Q8W171 (Q8W171) Cyclophilin, complete
Length = 1002
Score = 54.3 bits (129), Expect = 1e-08
Identities = 24/29 (82%), Positives = 25/29 (85%)
Frame = +1
Query: 6 FVVKHVGPGVLSMANAGPNTNGSQFFIST 34
FV KH GPG+LSMANAGP TNGSQFFI T
Sbjct: 385 FVKKHTGPGILSMANAGPGTNGSQFFICT 471
>TC224926 homologue to UP|Q41119 (Q41119) Cyclophilin , complete
Length = 1045
Score = 54.3 bits (129), Expect = 1e-08
Identities = 24/29 (82%), Positives = 25/29 (85%)
Frame = +3
Query: 6 FVVKHVGPGVLSMANAGPNTNGSQFFIST 34
FV KH GPG+LSMANAGP TNGSQFFI T
Sbjct: 336 FVKKHTGPGILSMANAGPGTNGSQFFICT 422
>TC205207 similar to UP|TL20_ARATH (Q9ASS6) Peptidyl-prolyl cis-trans
isomerase TLP20, chloroplast precursor (PPIase)
(Rotamase) (Thylakoid lumen PPIase of 20 kDa) , partial
(70%)
Length = 1124
Score = 53.9 bits (128), Expect = 2e-08
Identities = 24/30 (80%), Positives = 26/30 (86%)
Frame = +2
Query: 6 FVVKHVGPGVLSMANAGPNTNGSQFFISTV 35
F + H GPGV+SMANAGPNTNGSQFFI TV
Sbjct: 524 FNLSHTGPGVVSMANAGPNTNGSQFFICTV 613
>TC224897 similar to UP|Q40672 (Q40672) Cyclophilin 1 , partial (95%)
Length = 699
Score = 52.0 bits (123), Expect = 7e-08
Identities = 22/29 (75%), Positives = 26/29 (88%)
Frame = +2
Query: 6 FVVKHVGPGVLSMANAGPNTNGSQFFIST 34
F ++H GPG+LSMANAGP+TNGSQFFI T
Sbjct: 341 FNLRHTGPGILSMANAGPHTNGSQFFICT 427
>TC217669 similar to UP|Q9SP02 (Q9SP02) Cyclophilin ROC7
(AT5g58710/mzn1_160) , partial (39%)
Length = 487
Score = 50.1 bits (118), Expect = 3e-07
Identities = 22/30 (73%), Positives = 26/30 (86%)
Frame = +1
Query: 6 FVVKHVGPGVLSMANAGPNTNGSQFFISTV 35
F +KH GPG LSMAN+G +TNGSQFFI+TV
Sbjct: 10 FKLKHTGPGYLSMANSGEDTNGSQFFITTV 99
>TC217668 similar to UP|O80876 (O80876) Cyclophilin , partial (87%)
Length = 1028
Score = 50.1 bits (118), Expect = 3e-07
Identities = 22/30 (73%), Positives = 26/30 (86%)
Frame = +2
Query: 6 FVVKHVGPGVLSMANAGPNTNGSQFFISTV 35
F +KH GPG LSMAN+G +TNGSQFFI+TV
Sbjct: 518 FKLKHTGPGYLSMANSGEDTNGSQFFITTV 607
>TC231120 similar to UP|Q93VG0 (Q93VG0) Cyclophilin, complete
Length = 749
Score = 49.7 bits (117), Expect = 4e-07
Identities = 21/26 (80%), Positives = 24/26 (91%)
Frame = +2
Query: 8 VKHVGPGVLSMANAGPNTNGSQFFIS 33
+KH G G+LSMANAGPNTNGSQFFI+
Sbjct: 302 LKHTGAGILSMANAGPNTNGSQFFIT 379
>TC210153 similar to UP|Q6Q150 (Q6Q150) Multidomain cyclophilin type
peptidyl-prolyl cis-trans isomerase, partial (30%)
Length = 834
Score = 49.7 bits (117), Expect = 4e-07
Identities = 21/28 (75%), Positives = 25/28 (89%)
Frame = +3
Query: 6 FVVKHVGPGVLSMANAGPNTNGSQFFIS 33
F + H GPG+LSMAN+GPNTNGSQFFI+
Sbjct: 612 FKLTHDGPGILSMANSGPNTNGSQFFIT 695
>TC224944 similar to UP|Q40672 (Q40672) Cyclophilin 1 , partial (95%)
Length = 868
Score = 48.9 bits (115), Expect = 6e-07
Identities = 21/29 (72%), Positives = 25/29 (85%)
Frame = +1
Query: 6 FVVKHVGPGVLSMANAGPNTNGSQFFIST 34
F ++H GPG+LSMANAG +TNGSQFFI T
Sbjct: 364 FNLRHTGPGILSMANAGAHTNGSQFFICT 450
>BQ610122 similar to EGAD|127027|1354 cyclophilin {Entamoeba histolytica},
partial (94%)
Length = 334
Score = 48.5 bits (114), Expect = 8e-07
Identities = 21/23 (91%), Positives = 22/23 (95%)
Frame = +2
Query: 12 GPGVLSMANAGPNTNGSQFFIST 34
GPG+LSMANAGPNTNGSQFFI T
Sbjct: 59 GPGILSMANAGPNTNGSQFFICT 127
>TC219332 similar to UP|Q9C566 (Q9C566) Cyclophilin-40 (Expressed protein),
partial (91%)
Length = 1224
Score = 48.1 bits (113), Expect = 1e-06
Identities = 22/27 (81%), Positives = 24/27 (88%)
Frame = +3
Query: 8 VKHVGPGVLSMANAGPNTNGSQFFIST 34
VKH G+LSMANAGPNTNGSQFFI+T
Sbjct: 291 VKHERKGMLSMANAGPNTNGSQFFITT 371
>BG352786 similar to GP|4454307|emb cyclophilin {Pseudotsuga menziesii},
partial (60%)
Length = 443
Score = 47.8 bits (112), Expect = 1e-06
Identities = 20/28 (71%), Positives = 23/28 (81%)
Frame = +1
Query: 6 FVVKHVGPGVLSMANAGPNTNGSQFFIS 33
F KH GPG+LSMAN+G NTNG QFFI+
Sbjct: 355 FTAKHTGPGLLSMANSGQNTNGCQFFIT 438
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.321 0.136 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,295,466
Number of Sequences: 63676
Number of extensions: 7080
Number of successful extensions: 53
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of query: 35
length of database: 12,639,632
effective HSP length: 11
effective length of query: 24
effective length of database: 11,939,196
effective search space: 286540704
effective search space used: 286540704
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)
Lotus: description of TM0206b.1