BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0206a.3
(552 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC234560 similar to UP|Q9LGZ2 (Q9LGZ2) ESTs AU091298(C61241), pa... 127 2e-29
TC231633 101 1e-21
TC218074 similar to UP|Q93WX6 (Q93WX6) NIFS-like protein CpNifsp... 53 3e-07
TC206298 similar to GB|AAC19270.1|3193286|T14P8 coded for by A. ... 33 0.43
CO980185 32 0.56
BU763004 32 0.56
CO979010 32 0.74
TC223402 weakly similar to UP|Q9SFV8 (Q9SFV8) T1B9.5 protein, pa... 31 1.3
TC224244 similar to UP|Q6NQB8 (Q6NQB8) At4g08940, partial (16%) 30 2.1
TC211475 similar to UP|P79122 (P79122) Pinin, partial (5%) 30 2.1
AW395964 30 2.1
TC215795 similar to UP|Q9FXS6 (Q9FXS6) NtEIG-E80 protein, partia... 30 2.1
TC218170 weakly similar to UP|Q9LIM4 (Q9LIM4) Arabidopsis thalia... 30 2.1
TC221744 similar to UP|Q9FGD7 (Q9FGD7) Similarity to receptor-li... 30 2.8
TC221107 similar to UP|Q6NLR6 (Q6NLR6) At4g24230, partial (14%) 30 2.8
TC219610 similar to UP|Q9STA2 (Q9STA2) Hydroperoxide lyase, part... 30 3.7
TC203869 similar to UP|Q8L7Y2 (Q8L7Y2) At1g53800/T18A20_4, parti... 30 3.7
BU926447 similar to GP|8453100|gb|A short-root protein {Arabidop... 29 4.8
BE210248 similar to GP|22946479|gb CG32972-PB {Drosophila melano... 29 6.2
AW350384 29 6.2
>TC234560 similar to UP|Q9LGZ2 (Q9LGZ2) ESTs AU091298(C61241), partial (11%)
Length = 460
Score = 127 bits (318), Expect = 2e-29
Identities = 61/71 (85%), Positives = 64/71 (89%)
Frame = +1
Query: 481 SDALKLRTHLREAFGVEVPIYYRPPRDGEVEPVTGYARISHQVYNKVDDYYKFRDAVIQL 540
SDALKLRTHLR+AFGVEVPIYYR PR+GEV VTGYARISHQVYNKVDDYYKFRDAV QL
Sbjct: 10 SDALKLRTHLRDAFGVEVPIYYRSPREGEVGVVTGYARISHQVYNKVDDYYKFRDAVNQL 189
Query: 541 VDKGFTCALLS 551
V GFTC +LS
Sbjct: 190 VQNGFTCVVLS 222
>TC231633
Length = 547
Score = 101 bits (251), Expect = 1e-21
Identities = 53/73 (72%), Positives = 57/73 (77%)
Frame = +1
Query: 479 SDSDALKLRTHLREAFGVEVPIYYRPPRDGEVEPVTGYARISHQVYNKVDDYYKFRDAVI 538
SDSDA KLRT LR+ F VEVPIY+R DG V T YARIS QVYNKV+DYYKFR+AV
Sbjct: 10 SDSDAQKLRTRLRDEFDVEVPIYFRGGEDGSV---TAYARISRQVYNKVEDYYKFRNAVN 180
Query: 539 QLVDKGFTCALLS 551
QLV GFTCALLS
Sbjct: 181 QLVQDGFTCALLS 219
>TC218074 similar to UP|Q93WX6 (Q93WX6) NIFS-like protein CpNifsp precursor
(Cysteine desulfurase) (At1g08490/T27G7_14) , partial
(77%)
Length = 1302
Score = 53.1 bits (126), Expect = 3e-07
Identities = 43/184 (23%), Positives = 84/184 (45%), Gaps = 1/184 (0%)
Frame = +2
Query: 192 SRTIIKDLVNADHLDEISIVDNATTAAAIVLQNTAWAFREGTFQPGDVVLMLHYAYGAVK 251
+R + +NA EI NA+ A +V A+++ +P D +++ + +
Sbjct: 44 ARRKVASFINAIDSREIVFTKNASEAINLV----AYSWGLSNLKPDDEIILTVAEHHSAI 211
Query: 252 KSMEAYVTRAGGTVIEVPLPFPVKSSDDIVREFRSALERGKSGGKKVRLAVIDHVTSMPC 311
+ + G + V L D ++E S +K ++ V+ HV+++
Sbjct: 212 VPWQIVAQKTGAVLKFVDLNQDEIPDIDKLKEMLS---------RKTKIVVVHHVSNVLA 364
Query: 312 VVIPVKELVKICREEGVDRVFVDAAHSIGCTDVDMKEIGADFYTSNLHKWFFC-PPSIAF 370
V+P++++ + + G +V VDA S+ VD++ + ADF ++ HK C P I F
Sbjct: 365 SVLPIRDIAQWAHDVGA-KVLVDACQSVPHMMVDVQSLNADFLVASSHK--MCGPTGIGF 535
Query: 371 LYSR 374
LY +
Sbjct: 536 LYGK 547
>TC206298 similar to GB|AAC19270.1|3193286|T14P8 coded for by A. thaliana
cDNA H76583 {Arabidopsis thaliana;} , partial (57%)
Length = 1267
Score = 32.7 bits (73), Expect = 0.43
Identities = 23/88 (26%), Positives = 39/88 (44%)
Frame = +2
Query: 57 SISFSPLTHSILSLCLSSSSSSSYVVVLSLVIFTHHFLISSSMASTHNHNNNNNGCTTHI 116
S S P++ S + ++S+SS +++ + + HH H+HNNNNN +
Sbjct: 335 SCSTPPISASNATSAPATSTSSPMILLRTPLHHHHH----------HHHNNNNNNLLNPM 484
Query: 117 PKKPKLSPLSSSPFITPSEIQSEFSHHD 144
P + P + + T S Q S D
Sbjct: 485 IVLPLVGPFTMTSTTTRSTSQPSPSRRD 568
>CO980185
Length = 822
Score = 32.3 bits (72), Expect = 0.56
Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 4/82 (4%)
Frame = -1
Query: 14 KVFNNKHLFGFFNFGFPCGWIHVLCSLSKVKTHPLVSVPLIIYSISFSPLTHSILSLCLS 73
KV NK + FF + SLS+ S+ ++ S+SFS + S+ LS
Sbjct: 720 KVLQNKKVLSFF--------FSLSHSLSRTIKQTQASIRSLLISLSFSDFLRYVFSILLS 565
Query: 74 SSSSSSYVVVLSLV----IFTH 91
S +S V + + IFTH
Sbjct: 564 QSLRASLVAIYCWIGVI*IFTH 499
>BU763004
Length = 434
Score = 32.3 bits (72), Expect = 0.56
Identities = 11/32 (34%), Positives = 23/32 (71%)
Frame = -1
Query: 81 VVVLSLVIFTHHFLISSSMASTHNHNNNNNGC 112
+++L + IF ++ L+ +++ +N+NNNNN C
Sbjct: 365 ILLLDIFIFNYYDLLKHFISTFNNNNNNNNNC 270
>CO979010
Length = 712
Score = 32.0 bits (71), Expect = 0.74
Identities = 35/85 (41%), Positives = 45/85 (52%), Gaps = 4/85 (4%)
Frame = +1
Query: 22 FGFFNFGFPCGWIHVLCSLSKVKTHPLV---SVPLIIYSISFSPLTHSIL-SLCLSSSSS 77
F FFNF I +L SLS + L S L I S+ FS L S + LSSSSS
Sbjct: 241 FRFFNFA-----IFLLLSLSSSSSINLSCSSSSLLAIISLRFSSLKISSKPASILSSSSS 405
Query: 78 SSYVVVLSLVIFTHHFLISSSMAST 102
S+ ++ L L IF FL S+S +S+
Sbjct: 406 STNLLGL*LKIFLITFLKSTSSSSS 480
>TC223402 weakly similar to UP|Q9SFV8 (Q9SFV8) T1B9.5 protein, partial (11%)
Length = 699
Score = 31.2 bits (69), Expect = 1.3
Identities = 21/63 (33%), Positives = 33/63 (52%)
Frame = -3
Query: 27 FGFPCGWIHVLCSLSKVKTHPLVSVPLIIYSISFSPLTHSILSLCLSSSSSSSYVVVLSL 86
F P +L S S+ L S ++S++FSPL +L+ CL S SSS ++ + L
Sbjct: 421 FSAPPSLSLILLSKSRRNLESLFSSKK*LFSLAFSPL---LLANCLVSLSSSKTILSIGL 251
Query: 87 VIF 89
+ F
Sbjct: 250 ISF 242
>TC224244 similar to UP|Q6NQB8 (Q6NQB8) At4g08940, partial (16%)
Length = 632
Score = 30.4 bits (67), Expect = 2.1
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 3/82 (3%)
Frame = -2
Query: 77 SSSYVVVLSLVIFTHHFLISSSMASTHNHNNNNNGCTTHIPKKPKLSPLSSS---PFITP 133
+S Y ++SL HH I+S++A +H+ T +P P +S P + P
Sbjct: 304 ASQYTFLISLPQ-NHHIAINSNVALPPHHH-------TRVPFGPPEHTYKASH*TPPVGP 149
Query: 134 SEIQSEFSHHDPSVARINNGSF 155
S+ + F H +PS N+ F
Sbjct: 148 SQSKPHFHHTNPSRTHPNSSRF 83
>TC211475 similar to UP|P79122 (P79122) Pinin, partial (5%)
Length = 436
Score = 30.4 bits (67), Expect = 2.1
Identities = 16/62 (25%), Positives = 30/62 (47%)
Frame = +3
Query: 85 SLVIFTHHFLISSSMASTHNHNNNNNGCTTHIPKKPKLSPLSSSPFITPSEIQSEFSHHD 144
+L+++T H + + NNNNN ++ K+ K P + P + +++ S H
Sbjct: 51 ALLLWTSHPPLPLPIPRKKRSNNNNNHPLSNTKKRKKKFPPEKKRKLPPKKRKTKISPHH 230
Query: 145 PS 146
PS
Sbjct: 231 PS 236
>AW395964
Length = 308
Score = 30.4 bits (67), Expect = 2.1
Identities = 15/42 (35%), Positives = 25/42 (58%)
Frame = +3
Query: 73 SSSSSSSYVVVLSLVIFTHHFLISSSMASTHNHNNNNNGCTT 114
SSS+S+ ++ L L F + + +THN+NNNNN ++
Sbjct: 39 SSSNSTIFLEDLQLPDFEWSCNYNDNSTTTHNNNNNNNSSSS 164
>TC215795 similar to UP|Q9FXS6 (Q9FXS6) NtEIG-E80 protein, partial (76%)
Length = 1106
Score = 30.4 bits (67), Expect = 2.1
Identities = 19/74 (25%), Positives = 30/74 (39%)
Frame = -3
Query: 332 FVDAAHSIGCTDVDMKEIGADFYTSNLHKWFFCPPSIAFLYSRKHPKGGSGSELHHPVVS 391
F+ H+ V M TS++ W+ PPS AF S KH +E H
Sbjct: 387 FLSTPHASTHWSVSM*SAILSTTTSDVRHWYSTPPSAAFSVSNKHLFPDEATEKAHTSFG 208
Query: 392 HEYGNGLAVESAWI 405
+ ++ + AW+
Sbjct: 207 RS-SHTISAKDAWM 169
>TC218170 weakly similar to UP|Q9LIM4 (Q9LIM4) Arabidopsis thaliana genomic
DNA, chromosome 3, BAC clone:F4B12, partial (59%)
Length = 1210
Score = 30.4 bits (67), Expect = 2.1
Identities = 28/86 (32%), Positives = 43/86 (49%), Gaps = 7/86 (8%)
Frame = +3
Query: 37 LCSLSKVKTHPLVSVPLIIYSI-SFSPLTHSILSLCLSSSSSSSYVVVLSLVIFTHH--- 92
LCS+ + K+ + ++ + SF P T+ LSL S S S + S + HH
Sbjct: 42 LCSV*EQKSFIDYHISFSLFFLPSFLPSTNVALSL---SPSPPSLLQSPSSSLTHHHPSQ 212
Query: 93 --FLISSSMASTHNHNN-NNNGCTTH 115
F ISS TH+H++ +NN C +H
Sbjct: 213 LFFTISSFSPQTHHHHHHHNNYCFSH 290
>TC221744 similar to UP|Q9FGD7 (Q9FGD7) Similarity to receptor-like kinase,
partial (11%)
Length = 616
Score = 30.0 bits (66), Expect = 2.8
Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 10/141 (7%)
Frame = -1
Query: 31 CGWIHVLCSLSKVKT-----HPLVSV--PLIIYSISFSPLTHSILSLCLSSSSSSSYV-V 82
CG++ S+ + KT P +S+ P+I++ S S ++ L + LSSS + + +
Sbjct: 400 CGFVIAS*SMGQRKTLGISLEPALSIHPPIIVFGPSLSTISSPFLLISLSSSKTLAMLSS 221
Query: 83 VLSLVIFTHHFL--ISSSMASTHNHNNNNNGCTTHIPKKPKLSPLSSSPFITPSEIQSEF 140
L L + H + +SS+A ++ H C + + LS S IT S ++F
Sbjct: 220 ELGLALMDMHLIARAASSLARSNGH------CPAISSRTLPKAFLSISTVITSSTSPAQF 59
Query: 141 SHHDPSVARINNGSFGCCSAS 161
P IN C S S
Sbjct: 58 L---PVRRCINKTPMACKSDS 5
>TC221107 similar to UP|Q6NLR6 (Q6NLR6) At4g24230, partial (14%)
Length = 498
Score = 30.0 bits (66), Expect = 2.8
Identities = 26/93 (27%), Positives = 45/93 (47%), Gaps = 6/93 (6%)
Frame = -3
Query: 50 SVPLIIYSISFSPLTHSILSLCLSSSSSSS------YVVVLSLVIFTHHFLISSSMASTH 103
S PL + + + ++S+LS+ SSSSSS V + + LISS++ +
Sbjct: 325 SSPLTNFVAAINSFSNSLLSIPSQSSSSSSKFSFTPLSVTEASISVEGSTLISSTLFTFL 146
Query: 104 NHNNNNNGCTTHIPKKPKLSPLSSSPFITPSEI 136
++N C +P S +SSS F++ S +
Sbjct: 145 FSAESSNSCVPSLP-----SAISSSTFLSDSTV 62
>TC219610 similar to UP|Q9STA2 (Q9STA2) Hydroperoxide lyase, partial (51%)
Length = 815
Score = 29.6 bits (65), Expect = 3.7
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 7/63 (11%)
Frame = -1
Query: 425 RFEGGIEGIKKRN------HETVVE-MGDMLVKAWGTHVGCPPHMCASMVMVGLPTCLGV 477
RF G ++G+ ++ ETVV G L++ + C P +C +++V +P CL
Sbjct: 659 RF*GHVQGLHRQGLCRGT*RETVVTGKGTKLMRISRVMLRCCPTVCLGLILVLIPICLSF 480
Query: 478 QSD 480
S+
Sbjct: 479 FSE 471
>TC203869 similar to UP|Q8L7Y2 (Q8L7Y2) At1g53800/T18A20_4, partial (43%)
Length = 1750
Score = 29.6 bits (65), Expect = 3.7
Identities = 29/94 (30%), Positives = 44/94 (45%), Gaps = 7/94 (7%)
Frame = -3
Query: 23 GFFNF-----GFPCGWIHVL-CSLSKV-KTHPLVSVPLIIYSISFSPLTHSILSLCLSSS 75
GF NF G C + C L + TH V + L I+S PL + ++ L S
Sbjct: 770 GFCNFPSLFRGLGCSFARWCPCHLFPLFNTHQPVLLQLFIHSFIRIPLQLFLTNIALPRS 591
Query: 76 SSSSYVVVLSLVIFTHHFLISSSMASTHNHNNNN 109
+ ++ LS F HHFL S+ + + +H+N N
Sbjct: 590 FCN*-ILPLSAARFLHHFL-STPLFPSPSHSNTN 495
>BU926447 similar to GP|8453100|gb|A short-root protein {Arabidopsis
thaliana}, partial (7%)
Length = 450
Score = 29.3 bits (64), Expect = 4.8
Identities = 14/47 (29%), Positives = 26/47 (54%), Gaps = 2/47 (4%)
Frame = +3
Query: 102 THNHNNNNNGCTTHI--PKKPKLSPLSSSPFITPSEIQSEFSHHDPS 146
T+N+NNNN T + P P +P++ +P P + ++ S+ P+
Sbjct: 222 TNNNNNNNTTYPTFLQTPSAPPPTPITPTPSPPPHKFKTSTSNSPPT 362
>BE210248 similar to GP|22946479|gb CG32972-PB {Drosophila melanogaster},
partial (1%)
Length = 428
Score = 28.9 bits (63), Expect = 6.2
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +1
Query: 94 LISSSMASTHNHNNNNNGCTTHIPKKPKLSPLSSS 128
L+S+ HN+NNNNN P P+++P SS
Sbjct: 7 LLSTQTLLPHNNNNNNN----PFPPNPRIAPHRSS 99
>AW350384
Length = 627
Score = 28.9 bits (63), Expect = 6.2
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = +2
Query: 79 SYVVVLSLVIFTHHFLISSSMASTHNHNNNNNGCTTHIPKKPKLSPLSSS 128
S+ ++LSL + HH SS + T + + + H+P+ P L P S
Sbjct: 323 SFQIILSLTLQDHHRQKSSPVVQTFPQDCQYSTDSKHLPEPPWLIPFPPS 472
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.322 0.137 0.423
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,123,663
Number of Sequences: 63676
Number of extensions: 542912
Number of successful extensions: 4303
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 3980
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4200
length of query: 552
length of database: 12,639,632
effective HSP length: 102
effective length of query: 450
effective length of database: 6,144,680
effective search space: 2765106000
effective search space used: 2765106000
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)
Lotus: description of TM0206a.3