BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0201.13
(413 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC204439 UP|Q84VI4 (Q84VI4) Gag-pol polyprotein, complete 436 e-122
TC204438 homologue to UP|Q84VH6 (Q84VH6) Gag-pol polyprotein, co... 432 e-121
TC232995 226 1e-59
TC211311 weakly similar to UP|O24587 (O24587) Pol protein, parti... 219 2e-57
TC213445 120 1e-47
BM143109 173 1e-43
TC223792 weakly similar to UP|Q9FH39 (Q9FH39) Copia-type polypro... 171 4e-43
TC231899 similar to UP|Q850H7 (Q850H7) Gag-pol polyprotein (Frag... 140 1e-33
BU549979 127 7e-30
CO982036 126 2e-29
CO983516 124 1e-28
BG508993 119 2e-27
TC213888 similar to UP|Q9SFE1 (Q9SFE1) T26F17.17, partial (11%) 117 9e-27
BU548243 112 3e-25
BI321712 110 2e-24
AW185460 109 2e-24
TC232593 weakly similar to UP|Q9XG91 (Q9XG91) Tpv2-1c protein (F... 106 2e-23
TC231544 weakly similar to UP|Q9FLR2 (Q9FLR2) Polyprotein-like, ... 102 2e-22
AI855899 similar to GP|2244960|emb| retrotransposon like protein... 98 6e-21
TC221132 weakly similar to UP|O23529 (O23529) RETROTRANSPOSON li... 71 2e-20
>TC204439 UP|Q84VI4 (Q84VI4) Gag-pol polyprotein, complete
Length = 4731
Score = 436 bits (1120), Expect = e-122
Identities = 205/383 (53%), Positives = 284/383 (73%)
Frame = +1
Query: 17 SAFLNGYISEEVYVHQPPGFEDEKKPDHVFKLKKSLYGLKQAPRAWYERLSSFLLENEFV 76
SAFLNGY++EEVYV QP GF D PDHV++LKK+LYGLKQAPRAWYERL+ FL + +
Sbjct: 3535 SAFLNGYLNEEVYVEQPKGFADPTHPDHVYRLKKALYGLKQAPRAWYERLTEFLTQQGYR 3714
Query: 77 RGKVDTTLFCKTYKDDILIVQIYVDDIIFGSANQSLCKEFSEMMQAEFEMSMMGELKYFL 136
+G +D TLF K ++++I QIYVDDI+FG + + + F + MQ+EFEMS++GEL YFL
Sbjct: 3715 KGGIDKTLFVKQDAENLMIAQIYVDDIVFGGMSNEMLRHFVQQMQSEFEMSLVGELTYFL 3894
Query: 137 GIQVDQTPEGTYIHQSKYTKELLKKFNMLESTVAKTPMHPTCILEKEDKSGKVCQKLYRG 196
G+QV Q + ++ QS+Y K ++KKF M ++ +TP L K++ V Q LYR
Sbjct: 3895 GLQVKQMEDSIFLSQSRYAKNIVKKFGMENASHKRTPAPTHLKLSKDEAGTSVDQSLYRS 4074
Query: 197 MIGSLLYLTASRPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGTTNLGLMYKKTSEY 256
MIGSLLYLTASRPDI ++V +CAR+Q++P+ +HLT VKRIL+Y+ GT++ G+MY S
Sbjct: 4075 MIGSLLYLTASRPDITYAVGVCARYQANPKISHLTQVKRILKYVNGTSDYGIMYCHCSNP 4254
Query: 257 KLSGYCDADYAGDRTERKSTSGNCQFLGSNLVSWASKRQSTIALSTAEAEYISAAICSTQ 316
L GYCDAD+AG +RKSTSG C +LG+NL+SW SK+Q+ ++LSTAEAEYI+A +Q
Sbjct: 4255 MLVGYCDADWAGSADDRKSTSGGCFYLGNNLISWFSKKQNCVSLSTAEAEYIAAGSSCSQ 4434
Query: 317 MLWMKH*LEDYQILESNIPIYCDNTAAISLSKNPILHSRAKHIEVKYHFIRDYVQKGVLL 376
++WMK L++Y + + + +YCDN +AI++SKNP+ HSR KHI++++H+IRD V V+
Sbjct: 4435 LVWMKQMLKEYNVEQDVMTLYCDNMSAINISKNPVQHSRTKHIDIRHHYIRDLVDDKVIT 4614
Query: 377 LKFVDTDHQWADIFTKPLAEDRF 399
LK VDT+ Q ADIFTK L ++F
Sbjct: 4615 LKHVDTEEQIADIFTKALDANQF 4683
>TC204438 homologue to UP|Q84VH6 (Q84VH6) Gag-pol polyprotein, complete
Length = 4734
Score = 432 bits (1112), Expect = e-121
Identities = 203/383 (53%), Positives = 283/383 (73%)
Frame = +1
Query: 17 SAFLNGYISEEVYVHQPPGFEDEKKPDHVFKLKKSLYGLKQAPRAWYERLSSFLLENEFV 76
SAFLNGY++EE YV QP GF D PDHV++LKK+LYGLKQAPRAWYERL+ FL + +
Sbjct: 3538 SAFLNGYLNEEAYVEQPKGFVDPTHPDHVYRLKKALYGLKQAPRAWYERLTEFLTQQGYR 3717
Query: 77 RGKVDTTLFCKTYKDDILIVQIYVDDIIFGSANQSLCKEFSEMMQAEFEMSMMGELKYFL 136
+G +D TLF K ++++I QIYVDDI+FG + + + F + MQ+EFEMS++GEL YFL
Sbjct: 3718 KGGIDKTLFVKQDAENLMIAQIYVDDIVFGGMSNEMLRHFVQQMQSEFEMSLVGELTYFL 3897
Query: 137 GIQVDQTPEGTYIHQSKYTKELLKKFNMLESTVAKTPMHPTCILEKEDKSGKVCQKLYRG 196
G+QV Q + ++ QSKY K ++KKF M ++ +TP L K++ V Q LYR
Sbjct: 3898 GLQVKQMEDSIFLSQSKYAKNIVKKFGMENASHKRTPAPTHLKLSKDEAGTSVDQSLYRS 4077
Query: 197 MIGSLLYLTASRPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGTTNLGLMYKKTSEY 256
MIGSLLYLTASRPDI ++V +CAR+Q++P+ +HL VKRIL+Y+ GT++ G+MY S+
Sbjct: 4078 MIGSLLYLTASRPDITYAVGVCARYQANPKISHLNQVKRILKYVNGTSDYGIMYCHCSDS 4257
Query: 257 KLSGYCDADYAGDRTERKSTSGNCQFLGSNLVSWASKRQSTIALSTAEAEYISAAICSTQ 316
L GYCDAD+AG +RKSTSG C +LG+NL+SW SK+Q+ ++LSTAEAEYI+A +Q
Sbjct: 4258 MLVGYCDADWAGSADDRKSTSGGCFYLGTNLISWFSKKQNCVSLSTAEAEYIAAGSSCSQ 4437
Query: 317 MLWMKH*LEDYQILESNIPIYCDNTAAISLSKNPILHSRAKHIEVKYHFIRDYVQKGVLL 376
++WMK L++Y + + + +YCDN +AI++SKNP+ HSR KHI++++H+IRD V V+
Sbjct: 4438 LVWMKQMLKEYNVEQDVMTLYCDNMSAINISKNPVQHSRTKHIDIRHHYIRDLVDDKVIT 4617
Query: 377 LKFVDTDHQWADIFTKPLAEDRF 399
L+ VDT+ Q ADIFTK L ++F
Sbjct: 4618 LEHVDTEEQIADIFTKALDANQF 4686
>TC232995
Length = 1009
Score = 226 bits (576), Expect = 1e-59
Identities = 112/173 (64%), Positives = 133/173 (76%)
Frame = +2
Query: 30 VHQPPGFEDEKKPDHVFKLKKSLYGLKQAPRAWYERLSSFLLENEFVRGKVDTTLFCKTY 89
V QPPGFE KP+HV+KL+K+LYGLKQAPRAWYERLS+FLLE EF RGKVDTTLF K
Sbjct: 2 VEQPPGFEISDKPNHVYKLQKALYGLKQAPRAWYERLSNFLLEKEFSRGKVDTTLFIKRK 181
Query: 90 KDDILIVQIYVDDIIFGSANQSLCKEFSEMMQAEFEMSMMGELKYFLGIQVDQTPEGTYI 149
+DIL+VQIYVDDIIFGS N SLCKEFS MQ+EFEMSMMGELKYFLG+Q+ QT G +I
Sbjct: 182 HNDILLVQIYVDDIIFGSTNDSLCKEFSLDMQSEFEMSMMGELKYFLGLQIKQTQ*GIFI 361
Query: 150 HQSKYTKELLKKFNMLESTVAKTPMHPTCILEKEDKSGKVCQKLYRGMIGSLL 202
+QSKY KEL+K+F M + TPM C L+K++ + K YR IG ++
Sbjct: 362 NQSKYCKELIKRFGMDSAKHMSTPMSTNCYLDKDESGQSIDIKQYRDAIGEVV 520
>TC211311 weakly similar to UP|O24587 (O24587) Pol protein, partial (15%)
Length = 1213
Score = 219 bits (558), Expect = 2e-57
Identities = 122/247 (49%), Positives = 159/247 (63%), Gaps = 2/247 (0%)
Frame = +3
Query: 35 GFEDEKKPDHVFKLKKSL--YGLKQAPRAWYERLSSFLLENEFVRGKVDTTLFCKTYKDD 92
GFED+++P HVF + L G+K ++ S ++ K+
Sbjct: 330 GFEDKERPCHVFMV*NKL*ELGMKG*VHF*FQMDSPEE*RTPHYSERLK--------KET 485
Query: 93 ILIVQIYVDDIIFGSANQSLCKEFSEMMQAEFEMSMMGELKYFLGIQVDQTPEGTYIHQS 152
LI+ IYVDDIIFG+ ++ +CKEF E+M+ FE SM GELK+ LG+Q+ Q G +IHQ
Sbjct: 486 FLIIHIYVDDIIFGATSKRMCKEFFELMKDGFETSMKGELKFLLGLQIIQKVYGIFIHQE 665
Query: 153 KYTKELLKKFNMLESTVAKTPMHPTCILEKEDKSGKVCQKLYRGMIGSLLYLTASRPDIL 212
KYTK LK+F M E+ TPMH + I++K++K K Y GMI SL YLT+SRPDI+
Sbjct: 666 KYTKSHLKRFRMDEAKPMATPMHRSTIIDKDEKGNHTS*KEYSGMIDSLSYLTSSRPDIV 845
Query: 213 FSVHLCARFQSDPRETHLTAVKRILRYLKGTTNLGLMYKKTSEYKLSGYCDADYAGDRTE 272
F V LCARFQS P+ +H+TAVKRILRYL GTTN L +KK SE+ L GYCD +AGD+ E
Sbjct: 846 FVVCLCARFQSYPKISHVTAVKRILRYLVGTTNHCLWFKKRSEFDLLGYCDVYFAGDKVE 1025
Query: 273 RKSTSGN 279
RKSTS N
Sbjct: 1026RKSTSRN 1046
>TC213445
Length = 705
Score = 120 bits (302), Expect(2) = 1e-47
Identities = 57/98 (58%), Positives = 76/98 (77%)
Frame = +1
Query: 270 RTERKSTSGNCQFLGSNLVSWASKRQSTIALSTAEAEYISAAICSTQMLWMKH*LEDYQI 329
+T+R+STS C F+GS LVSW SK+Q+++ LSTAEAEYISA Q+ WM+ L DY +
Sbjct: 400 KTDRESTSDTCHFIGSALVSWHSKKQNSVVLSTAEAEYISARSYYAQIFWMRQQLFDYGL 579
Query: 330 LESNIPIYCDNTAAISLSKNPILHSRAKHIEVKYHFIR 367
+IPI CDNT+AI+LSKN IL+SR KHIE+++HF+R
Sbjct: 580 KLDHIPIRCDNTSAINLSKNHILYSRTKHIEIRHHFLR 693
Score = 87.4 bits (215), Expect(2) = 1e-47
Identities = 40/68 (58%), Positives = 51/68 (74%)
Frame = +2
Query: 197 MIGSLLYLTASRPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGTTNLGLMYKKTSEY 256
MI S LYL+ SRP I+FSV +C R+Q++P+E+HL+ +KRI+RYL G NLGL Y K S Y
Sbjct: 197 MIESFLYLSTSRPHIMFSVCMCVRYQANPKESHLSVIKRIMRYLLGIINLGLWYPKNSSY 376
Query: 257 KLSGYCDA 264
L GY DA
Sbjct: 377 NLVGYSDA 400
>BM143109
Length = 415
Score = 173 bits (438), Expect = 1e-43
Identities = 86/133 (64%), Positives = 103/133 (76%)
Frame = +1
Query: 32 QPPGFEDEKKPDHVFKLKKSLYGLKQAPRAWYERLSSFLLENEFVRGKVDTTLFCKTYKD 91
QPP ++ +KP+HVFKLKK LYGLKQA RAWYE LS FLL+ F +GKVDT LF +
Sbjct: 4 QPPVRKNSEKPNHVFKLKKVLYGLKQALRAWYELLSKFLLDKGFSKGKVDTNLFI*KKLN 183
Query: 92 DILIVQIYVDDIIFGSANQSLCKEFSEMMQAEFEMSMMGELKYFLGIQVDQTPEGTYIHQ 151
DIL+VQIYVDDIIFGS N SLCK+FS+ MQ EFEMSMM EL +FLG+Q+ QT G +I Q
Sbjct: 184 DILLVQIYVDDIIFGSTNDSLCKKFSQDMQNEFEMSMMRELNFFLGLQIKQTKNGIFISQ 363
Query: 152 SKYTKELLKKFNM 164
SKY K+L+ +F M
Sbjct: 364 SKYCKDLIHRFGM 402
>TC223792 weakly similar to UP|Q9FH39 (Q9FH39) Copia-type polyprotein,
partial (7%)
Length = 804
Score = 171 bits (434), Expect = 4e-43
Identities = 90/217 (41%), Positives = 138/217 (63%), Gaps = 4/217 (1%)
Frame = +1
Query: 194 YRGMIGSLLYLTASRPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGTTNLGLMYK-- 251
+R +IGSL YL SRP+I F+V L +RF PR +H+ A KR+LR +KGT G+++
Sbjct: 22 FRRLIGSLRYLCNSRPNICFAVSLISRFMKRPRLSHMQAAKRVLRLIKGTIGSGVLFPFK 201
Query: 252 -KTSEYKLSGYCDADYAGDRTERKSTSGNCQFLGSNLVSWASKRQSTIALSTAEAEYISA 310
K+ + L GY D+D+ D + KST G V+ +SK+Q IALST EAEY++A
Sbjct: 202 AKSGKPDLLGYTDSDWKRDPEQEKSTGGYLFMYNDAPVA*SSKKQDVIALSTCEAEYVAA 381
Query: 311 AICSTQMLWMKH*LEDYQILESN-IPIYCDNTAAISLSKNPILHSRAKHIEVKYHFIRDY 369
++ + Q +WM + LE+ ++ E + + DN +AI+L+K+P LH R+KHIE+++H+IRD
Sbjct: 382 SLGACQAVWMMNLLEELKLRERKPVNLLIDNKSAINLAKHPTLHGRSKHIELRFHYIRDQ 561
Query: 370 VQKGVLLLKFVDTDHQWADIFTKPLAEDRFNFILKNL 406
V KG + +++ + Q AD+ TKP+ RF I L
Sbjct: 562 VSKGNVTVEYCKAEEQLADLMTKPIQVSRFKQICSEL 672
>TC231899 similar to UP|Q850H7 (Q850H7) Gag-pol polyprotein (Fragment),
partial (30%)
Length = 687
Score = 140 bits (353), Expect = 1e-33
Identities = 65/151 (43%), Positives = 100/151 (66%), Gaps = 1/151 (0%)
Frame = +2
Query: 257 KLSGYCDADYAGDRTERKSTSGNCQFLGSNLVSWASKRQSTIALSTAEAEYISAAICSTQ 316
+LSGYCDAD+AG +R+STSG C F+G NLVSW SK+Q+ +A S+AEAEY S A+ + +
Sbjct: 14 QLSGYCDADWAGCPMDRRSTSGYCVFIGGNLVSWKSKKQTVVARSSAEAEYRSMAMVTCE 193
Query: 317 MLWMKH*LEDYQILES-NIPIYCDNTAAISLSKNPILHSRAKHIEVKYHFIRDYVQKGVL 375
++W+K L++ + E + +YCDN AA+ ++ NP+ H R KHIE+ HFIR+ + +
Sbjct: 194 LMWIKQFLQELRFCEELQMKLYCDNQAALHIASNPVFHERTKHIEIDCHFIREKLLSKEI 373
Query: 376 LLKFVDTDHQWADIFTKPLAEDRFNFILKNL 406
+ +F+ ++ Q DI TK L + + L
Sbjct: 374 VTEFIGSNDQPVDILTKSLRGPKIQIVCSKL 466
>BU549979
Length = 615
Score = 127 bits (320), Expect = 7e-30
Identities = 65/183 (35%), Positives = 112/183 (60%), Gaps = 3/183 (1%)
Frame = -1
Query: 220 RFQSDPRETHLTAVKRILRYLKGTTNLGLMYKKTSEYKLSGYCDADYAGDRTERKSTSGN 279
R+QS+P H K+++RYL+GT + LMYK+T+ ++ GY D+D+AG R+STSG
Sbjct: 606 RYQSNPGIDHWKTAKKVMRYLQGTKDYMLMYKQTNCLEVIGYSDSDFAGCVDSRRSTSGY 427
Query: 280 CQFLGSNLVSWASKRQSTIALSTAEAEYISAAICSTQMLWMKH*LEDYQILES---NIPI 336
L +VSW S +Q+ IA ST E E++ ++ +W+K + ++++S + +
Sbjct: 426 IFMLADGVVSWRSSKQTLIATSTMEVEFVPCFEATSHGVWLKSFMSSLRVVDSISRPLKL 247
Query: 337 YCDNTAAISLSKNPILHSRAKHIEVKYHFIRDYVQKGVLLLKFVDTDHQWADIFTKPLAE 396
YCDN AA+ ++KN +R+KHI++KY IR+ V++ ++++ V+T+ D TK +
Sbjct: 246 YCDNFAAVFMAKNNKSGNRSKHIDIKYLVIRERVKEKKVVIEHVNTELMIVDPLTKGMTP 67
Query: 397 DRF 399
F
Sbjct: 66 KNF 58
>CO982036
Length = 674
Score = 126 bits (316), Expect = 2e-29
Identities = 76/212 (35%), Positives = 119/212 (55%), Gaps = 5/212 (2%)
Frame = -2
Query: 89 YKDDILIVQ--IYVDDIIFGSANQSLCKEFSEMMQAEFEMSMMGELKYFLGIQVDQTPEG 146
YK IL V +YVD II GS+ +L + + + + F + ++G+L YF+ I+V P+
Sbjct: 673 YKTHILTVYLLVYVDIIITGSSC-TLIQNLTSKLNSSFPLKLLGKLDYFVEIEVKSMPDL 497
Query: 147 TYIHQSKYTKELLKKFNMLESTVAKTPMHPTCILEKEDKSGKVCQKLYRGMIGSLLYLTA 206
+ ++ + +K ++ +PM TC L K D YR ++G+L Y T
Sbjct: 496 LFSLRTSIFEIFCRKPR*QAQPIS-SPMTTTCKLSKSDSDLFSGPTFYRSVVGALQYTTV 320
Query: 207 SRPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGTTNLGLMYK---KTSEYKLSGYCD 263
RP+I F+V+ +F S+P ++H T VKRILRYLKG+ + GL K + + G+CD
Sbjct: 319 IRPEISFAVNKVCQFMSNPLDSHWTEVKRILRYLKGSLSYGL*LKPAISSQPLPIRGFCD 140
Query: 264 ADYAGDRTERKSTSGNCQFLGSNLVSWASKRQ 295
AD+A +++STSG FLG NL+SW +Q
Sbjct: 139 ADWASAVDDKRSTSGAAVFLGPNLISWWXXKQ 44
>CO983516
Length = 724
Score = 124 bits (310), Expect = 1e-28
Identities = 56/90 (62%), Positives = 71/90 (78%)
Frame = +2
Query: 17 SAFLNGYISEEVYVHQPPGFEDEKKPDHVFKLKKSLYGLKQAPRAWYERLSSFLLENEFV 76
SAFLNGY++EEVYV QP GF D PDHV++LKK+LYGLKQAPRAWYERL+ L + +
Sbjct: 455 SAFLNGYLNEEVYVEQPKGFIDPTHPDHVYRLKKALYGLKQAPRAWYERLTELLTQQGYR 634
Query: 77 RGKVDTTLFCKTYKDDILIVQIYVDDIIFG 106
+G +D TLF K ++++I QIYVDDI+FG
Sbjct: 635 KGGIDKTLFVKQDAENLMIAQIYVDDIVFG 724
>BG508993
Length = 374
Score = 119 bits (298), Expect = 2e-27
Identities = 53/123 (43%), Positives = 83/123 (67%), Gaps = 1/123 (0%)
Frame = +1
Query: 241 KGTTNLGLMYKKTSEYKLSGYCDADYAGDRTERKSTSGNCQFLGSNLVSWASKRQSTIAL 300
KGT + GL Y ++ YKL G+CD+D+AGD +RKST+G F+G + +W+SK+Q + L
Sbjct: 4 KGTIDFGLFYSPSNNYKLVGFCDSDFAGDVDDRKSTTGFVFFMGDCVFTWSSKKQGIVTL 183
Query: 301 STAEAEYISAAICSTQMLWMKH*LEDYQILE-SNIPIYCDNTAAISLSKNPILHSRAKHI 359
T EAEY++A C+ +W++ LE+ Q+L+ + IY DN +A L+KN + H R+KHI
Sbjct: 184 FTCEAEYVAATSCTCHAIWLRRLLEELQLLQKESTKIYVDNRSAQELAKNSVFHERSKHI 363
Query: 360 EVK 362
+ +
Sbjct: 364 DTR 372
>TC213888 similar to UP|Q9SFE1 (Q9SFE1) T26F17.17, partial (11%)
Length = 493
Score = 117 bits (293), Expect = 9e-27
Identities = 55/131 (41%), Positives = 88/131 (66%), Gaps = 1/131 (0%)
Frame = +3
Query: 270 RTERKSTSGNCQFLGSNLVSWASKRQSTIALSTAEAEYISAAICSTQMLWMKH*LEDYQI 329
R +RKST+G F+G +W SK+Q + LST EAEY++A C +W+++ L++ ++
Sbjct: 6 RDDRKSTTGFVFFMGDTAFTWMSKKQPIVTLSTCEAEYVAATSCVCHAIWLRNLLKELKM 185
Query: 330 -LESNIPIYCDNTAAISLSKNPILHSRAKHIEVKYHFIRDYVQKGVLLLKFVDTDHQWAD 388
E + I DN +A++L+KNP+ H ++KHI+ +YHFIR+ ++K + LK+V + Q AD
Sbjct: 186 PQEEPMEICVDNKSALALAKNPVFHEKSKHIDTRYHFIRECIEKKEVKLKYVMSQDQAAD 365
Query: 389 IFTKPLAEDRF 399
IFTKPL + F
Sbjct: 366 IFTKPLKLETF 398
>BU548243
Length = 599
Score = 112 bits (280), Expect = 3e-25
Identities = 57/147 (38%), Positives = 86/147 (57%)
Frame = -1
Query: 262 CDADYAGDRTERKSTSGNCQFLGSNLVSWASKRQSTIALSTAEAEYISAAICSTQMLWMK 321
CDA +A D + +ST G+ FLG NL+SW S++Q A S+ EAEY S A S ++ W++
Sbjct: 590 CDAGWASDVDDHRSTLGSAIFLGPNLISWWSRKQQVTAQSSTEAEYRSIAQTSAELTWIQ 411
Query: 322 H*LEDYQILESNIPIYCDNTAAISLSKNPILHSRAKHIEVKYHFIRDYVQKGVLLLKFVD 381
L + QI + I CDN +A++++ N + HSR KH+E+ F+ + V L + +
Sbjct: 410 ALLMELQIPFTPPVILCDNKSAVAIAHNLVFHSRTKHMEIDVFFVHEKVLSKQLQIFHIP 231
Query: 382 TDHQWADIFTKPLAEDRFNFILKNLNM 408
QWA I TKPL+ RF F+ L +
Sbjct: 230 ALDQWAGILTKPLSSARFTFLKSKLTV 150
>BI321712
Length = 399
Score = 110 bits (274), Expect = 2e-24
Identities = 57/124 (45%), Positives = 79/124 (62%)
Frame = -3
Query: 98 IYVDDIIFGSANQSLCKEFSEMMQAEFEMSMMGELKYFLGIQVDQTPEGTYIHQSKYTKE 157
+YVDD+IF N S+ +EF + M EFEM+ MG + Y+LGI+V Q +G +I Q Y KE
Sbjct: 379 LYVDDLIFTGNNPSMFEEFKKDMSNEFEMTDMGLMAYYLGIEVKQEDKGIFITQEGYAKE 200
Query: 158 LLKKFNMLESTVAKTPMHPTCILEKEDKSGKVCQKLYRGMIGSLLYLTASRPDILFSVHL 217
+LKKF M ++ TPM L K +K V LY+ +IGSL YLT +RPDIL+ V +
Sbjct: 199 VLKKFKMDDANPVGTPMECGSKLSKHEKGENVDPTLYKSLIGSLRYLTCTRPDILYVVGV 20
Query: 218 CARF 221
+R+
Sbjct: 19 VSRY 8
>AW185460
Length = 411
Score = 109 bits (273), Expect = 2e-24
Identities = 53/106 (50%), Positives = 72/106 (67%)
Frame = +2
Query: 206 ASRPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGTTNLGLMYKKTSEYKLSGYCDAD 265
A+RPDI+++ L +RF P + H A KRILRYL+GT G+ Y + +L GY D+D
Sbjct: 89 ATRPDIMYATSLLSRFMQSPSQIHFGAGKRILRYLQGTKAFGIWYTTETNSELLGYTDSD 268
Query: 266 YAGDRTERKSTSGNCQFLGSNLVSWASKRQSTIALSTAEAEYISAA 311
+AG + KSTSG LGS + SWASK+Q+T+A STAEAEY++ A
Sbjct: 269 WAGSTDDMKSTSGYAFSLGSGMFSWASKKQATVAQSTAEAEYVAVA 406
>TC232593 weakly similar to UP|Q9XG91 (Q9XG91) Tpv2-1c protein (Fragment),
partial (16%)
Length = 562
Score = 106 bits (264), Expect = 2e-23
Identities = 54/122 (44%), Positives = 76/122 (62%)
Frame = +1
Query: 94 LIVQIYVDDIIFGSANQSLCKEFSEMMQAEFEMSMMGELKYFLGIQVDQTPEGTYIHQSK 153
LIV +YVDD++ + L +EF + M FEM+ +G + YFLGI++ Q+ I Q K
Sbjct: 193 LIVSLYVDDLLVTRDDARLVEEFKQEMMQAFEMTNLGLMTYFLGIEIKQSQNKVLICQRK 372
Query: 154 YTKELLKKFNMLESTVAKTPMHPTCILEKEDKSGKVCQKLYRGMIGSLLYLTASRPDILF 213
Y KE+LKKF M E TPM+ K D + K+ + YR +IG L+YLTA+RPDILF
Sbjct: 373 YAKEILKKFQMEECKSVSTPMNQKEKFNKVDGADKIDEGYYRSLIGCLMYLTATRPDILF 552
Query: 214 SV 215
++
Sbjct: 553 AI 558
>TC231544 weakly similar to UP|Q9FLR2 (Q9FLR2) Polyprotein-like, partial
(16%)
Length = 662
Score = 102 bits (255), Expect = 2e-22
Identities = 64/183 (34%), Positives = 105/183 (56%), Gaps = 4/183 (2%)
Frame = +3
Query: 230 LTAVKRILRYLKGTTNLGLMYKKTSEYKLSGYCDADYAGDRTERKSTSGNCQFLGSNLVS 289
L A R+L+YLKG GL + + S ++ G+ DAD+A KS + C FLGS+L+S
Sbjct: 12 LCAATRVLKYLKGCPRKGLSFSRESPIQILGFSDADWATCIDSSKSITWYCFFLGSSLIS 191
Query: 290 WASKRQSTIALSTAEAEYISAAICST--QMLWMKH*LEDYQILESNIPIYCDNTAAIS-L 346
W +K+Q+T++ S++ +E A+ ST ++ W+ + L+D + IYCDN +A+ L
Sbjct: 192 WKAKKQNTVSRSSSSSEAKYRALTSTTCELQWLTYLLKDLHV----TLIYCDNQSALQ*L 359
Query: 347 SKNPILHSRAKHIEVKYHFIRDYVQKGVL-LLKFVDTDHQWADIFTKPLAEDRFNFILKN 405
I H + +E+ H +R+ Q+G++ L V + +Q ADIFTK L+ F+ L
Sbjct: 360 PIKVIYHGQ---LEIDCHIVREKTQQGLMHCLLPVSSSNQLADIFTKALSPKLFSSNLSK 530
Query: 406 LNM 408
L +
Sbjct: 531 LGL 539
>AI855899 similar to GP|2244960|emb| retrotransposon like protein
{Arabidopsis thaliana}, partial (18%)
Length = 418
Score = 98.2 bits (243), Expect = 6e-21
Identities = 53/136 (38%), Positives = 79/136 (57%), Gaps = 3/136 (2%)
Frame = +1
Query: 163 NMLESTVAKTPMHPTCILEKEDKSGKVCQKLYRGMIGSLLYLTASRPDILFSVHLCARFQ 222
NML+ TPM + L K YR ++G+L Y+T +RP+I ++V+ + F
Sbjct: 10 NMLDCNGISTPMVSSYKLSKFGSELLPNAHQYRDIVGALQYVTLTRPNIAYNVNKVSEFM 189
Query: 223 SDPRETHLTAVKRILRYLKGTTNLGLMYKKT---SEYKLSGYCDADYAGDRTERKSTSGN 279
S P +++ VKRILRYL GT GL+ + ++ L Y D D+ D E +STSG+
Sbjct: 190 SSPLQSY*LTVKRILRYLSGTVTQGLLLQPAHMDAKISLRAYNDLDWGSDPAEMRSTSGS 369
Query: 280 CQFLGSNLVSWASKRQ 295
C F GSNL++W+SK+Q
Sbjct: 370 CIFSGSNLIAWSSKKQ 417
>TC221132 weakly similar to UP|O23529 (O23529) RETROTRANSPOSON like protein,
partial (5%)
Length = 799
Score = 70.9 bits (172), Expect(2) = 2e-20
Identities = 34/115 (29%), Positives = 64/115 (55%)
Frame = +1
Query: 193 LYRGMIGSLLYLTASRPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGTTNLGLMYKK 252
L+ + + ++ S I S+ ++F DP + + A KR+LRYLKGT + GL +
Sbjct: 55 LFTASLSTRCNISLSHALI*HSLSTSSQFMKDPTKIRMQATKRVLRYLKGTIDFGLQLRS 234
Query: 253 TSEYKLSGYCDADYAGDRTERKSTSGNCQFLGSNLVSWASKRQSTIALSTAEAEY 307
+ + L + DA++ + ++ +ST + G +++SW+ K+QS I S+ + EY
Sbjct: 235 SPDQHLRAFYDANWVDNTSDIRSTGAYVVYFGLSVISWSCKKQSIIDKSSTKVEY 399
Score = 46.2 bits (108), Expect(2) = 2e-20
Identities = 22/73 (30%), Positives = 37/73 (50%)
Frame = +2
Query: 336 IYCDNTAAISLSKNPILHSRAKHIEVKYHFIRDYVQKGVLLLKFVDTDHQWADIFTKPLA 395
+Y N A+ L NP+ H KH+ + + F++D V L + V + H D+FTK L
Sbjct: 455 MYSYNIGAMYLCANPVFHLCMKHLTIDHLFVQDLVANKQLRVSHVPSCH*HVDLFTKALV 634
Query: 396 EDRFNFILKNLNM 408
R F++ + +
Sbjct: 635 SSRHKFMMDKIGV 673
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.324 0.138 0.415
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,471,506
Number of Sequences: 63676
Number of extensions: 247549
Number of successful extensions: 1474
Number of sequences better than 10.0: 101
Number of HSP's better than 10.0 without gapping: 1439
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1448
length of query: 413
length of database: 12,639,632
effective HSP length: 100
effective length of query: 313
effective length of database: 6,272,032
effective search space: 1963146016
effective search space used: 1963146016
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 60 (27.7 bits)
Lotus: description of TM0201.13