BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0200.8
(213 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC205920 similar to UP|14P_ARATH (O64628) UPF0071 protein At2g18... 368 e-102
TC205921 similar to UP|14P_ARATH (O64628) UPF0071 protein At2g18... 367 e-102
TC225270 similar to UP|Q6NPL9 (Q6NPL9) At3g50960, partial (89%) 138 2e-33
BG790980 similar to GP|10177522|dbj contains similarity to ATP b... 77 6e-15
TC223510 similar to UP|Q9VGV8 (Q9VGV8) CG4511-PA (GM03430p) (RE2... 62 2e-10
TC205050 similar to UP|Q6PV94 (Q6PV94) Thioredoxin, complete 50 8e-07
BU080946 weakly similar to GP|25990392|gb thioredoxin h {Brassic... 47 5e-06
BM528134 similar to GP|27466896|gb| thioredoxin h {Pisum sativum... 47 5e-06
TC205049 UP|Q6PV94 (Q6PV94) Thioredoxin, complete 47 6e-06
TC217516 weakly similar to UP|Q8GUR8 (Q8GUR8) Thioredoxin h, par... 47 6e-06
TC206566 weakly similar to UP|Q6VBI6 (Q6VBI6) Thioredoxin H2, pa... 44 4e-05
TC204597 homologue to UP|Q9M5J3 (Q9M5J3) Beta galactosidase, par... 42 3e-04
CD398005 41 5e-04
TC224616 similar to UP|THM4_ARATH (Q9SEU6) Thioredoxin M-type 4,... 41 5e-04
TC224685 similar to UP|THM4_ARATH (Q9SEU6) Thioredoxin M-type 4,... 40 8e-04
TC204598 similar to UP|Q8GUR9 (Q8GUR9) Thioredoxin h, partial (98%) 40 0.001
TC224651 weakly similar to UP|THIM_BRANA (Q9XGS0) Thioredoxin M-... 40 0.001
TC212647 weakly similar to UP|Q8L9A6 (Q8L9A6) Thioredoxin, parti... 40 0.001
TC206740 similar to UP|Q93X83 (Q93X83) Hsp70 interacting protein... 40 0.001
BG363241 weakly similar to GP|10177522|dbj contains similarity t... 39 0.002
>TC205920 similar to UP|14P_ARATH (O64628) UPF0071 protein At2g18990, partial
(86%)
Length = 985
Score = 368 bits (944), Expect = e-102
Identities = 182/213 (85%), Positives = 201/213 (93%)
Frame = +2
Query: 1 MDKGKIQEVIEKQVLTVVQAVEDKIDDEISALDRLDSDDLESLRERRLHQMKKMAEKRNR 60
MDKGKIQEVIE QVLTV QAVEDKIDDEI+AL+RLD+DD+E+LRERRL QMKKMAEKR+R
Sbjct: 122 MDKGKIQEVIENQVLTVAQAVEDKIDDEIAALERLDADDIEALRERRLQQMKKMAEKRSR 301
Query: 61 WISLGHGDYSELPSEKDFFSVVKASDRVVCHFFRENWPCKVADKHLGVLAKQHIETRFVK 120
WISLGH +YSE+PSEKDFFSVVKAS+RVVCHFFRENWPCKV DKHL +LAKQHIETRFVK
Sbjct: 302 WISLGHSEYSEIPSEKDFFSVVKASERVVCHFFRENWPCKVMDKHLNILAKQHIETRFVK 481
Query: 121 INAEKSPFLAEKLKITVLPTLALIKNAKVDDYVVGFDELGGTDDFSTEDLEERLAKAQVI 180
+NAEKSPFLAEKLKI VLPTLALIKNAKVDDYVVGFDELGGTD+FSTE+LEERLAKAQVI
Sbjct: 482 LNAEKSPFLAEKLKIIVLPTLALIKNAKVDDYVVGFDELGGTDEFSTEELEERLAKAQVI 661
Query: 181 FLEGESSIHQARSTAQSKRSVRQATRADSSDSE 213
F EGESS + RS+A++ RSVRQ++RADSSDSE
Sbjct: 662 FYEGESSFNHVRSSAKTTRSVRQSSRADSSDSE 760
>TC205921 similar to UP|14P_ARATH (O64628) UPF0071 protein At2g18990, partial
(86%)
Length = 1237
Score = 367 bits (943), Expect = e-102
Identities = 181/213 (84%), Positives = 202/213 (93%)
Frame = +3
Query: 1 MDKGKIQEVIEKQVLTVVQAVEDKIDDEISALDRLDSDDLESLRERRLHQMKKMAEKRNR 60
MDKGKI+EVIEKQVLTV QAVEDKIDDEI+AL+RLD+DD+E+LRERRL QMKKMAEKR+R
Sbjct: 186 MDKGKIEEVIEKQVLTVAQAVEDKIDDEIAALERLDADDIEALRERRLQQMKKMAEKRSR 365
Query: 61 WISLGHGDYSELPSEKDFFSVVKASDRVVCHFFRENWPCKVADKHLGVLAKQHIETRFVK 120
WISLGH +YSE+PSEKDFF VVKAS+RVVCHF+RENWPCKV DKHL +LAKQHIETRFVK
Sbjct: 366 WISLGHSEYSEIPSEKDFFPVVKASERVVCHFYRENWPCKVMDKHLNILAKQHIETRFVK 545
Query: 121 INAEKSPFLAEKLKITVLPTLALIKNAKVDDYVVGFDELGGTDDFSTEDLEERLAKAQVI 180
+NAEKSPFLAEKLKI VLPTLALIKNAKVDDYVVGFDELGGTD+FSTE+LEERLAKAQVI
Sbjct: 546 LNAEKSPFLAEKLKIVVLPTLALIKNAKVDDYVVGFDELGGTDEFSTEELEERLAKAQVI 725
Query: 181 FLEGESSIHQARSTAQSKRSVRQATRADSSDSE 213
F EGESS + ARS+A++ RSVRQ++RADSSDSE
Sbjct: 726 FYEGESSFNHARSSAKTTRSVRQSSRADSSDSE 824
>TC225270 similar to UP|Q6NPL9 (Q6NPL9) At3g50960, partial (89%)
Length = 1185
Score = 138 bits (348), Expect = 2e-33
Identities = 76/191 (39%), Positives = 110/191 (56%), Gaps = 2/191 (1%)
Frame = +1
Query: 25 IDDEISALDRLDSDDLESLRERRLHQMKKMAEKRNRWISLGHGDYSELPSEKDFFSVVKA 84
+ E+ + +D +LE L R+ +KK AEKR W GHG++ E+ +E DF V
Sbjct: 274 VHQEVDLDELMDDPELEKLHADRIAALKKEAEKREEWKKKGHGEFREV-TEGDFLGEVTG 450
Query: 85 SDRVVCHFF-RENWPCKVADKHLGVLAKQHIETRFVKINAEKSPFLAEKLKITVLPTLAL 143
S++V+CHF+ RE + CK+ DKHL LA HI+T+F+K++AE +PF KL I LP + L
Sbjct: 451 SEKVICHFYHREFYRCKIMDKHLKSLAPMHIDTKFIKLDAENAPFFVTKLAIKTLPCVLL 630
Query: 144 IKNAKVDDYVVGFDELGGTDDFSTEDLEERLAKAQVIFLEGESSIHQARSTAQSKRSVRQ 203
+ D +VGF ++GG DDF+T LE L K +I + ++R VR
Sbjct: 631 FRQGVAVDRLVGFQDVGGKDDFTTRTLEALLIKKGIIEEKKAEDDEDDEYIDSTRRVVRS 810
Query: 204 ATRADS-SDSE 213
+T A S SDSE
Sbjct: 811 STIAGSDSDSE 843
>BG790980 similar to GP|10177522|dbj contains similarity to ATP binding
protein associated with cell
differentiation~gene_id:K1F13.6, partial (30%)
Length = 408
Score = 77.0 bits (188), Expect = 6e-15
Identities = 36/75 (48%), Positives = 53/75 (70%), Gaps = 1/75 (1%)
Frame = +3
Query: 53 KMAEKRNRWISLGHGDYSELPSEKDFFSVVKASDRVVCHFF-RENWPCKVADKHLGVLAK 111
K AEKR W GHG++ E+ +E DF V S++V+CHF+ +E + CK+ DKHL LA
Sbjct: 81 KEAEKREEWKKKGHGEFREV-TEGDFLGEVTGSEKVICHFYHKEFYRCKIMDKHLKSLAP 257
Query: 112 QHIETRFVKINAEKS 126
+HI+T+F+K++AE S
Sbjct: 258 KHIDTKFIKLDAEVS 302
>TC223510 similar to UP|Q9VGV8 (Q9VGV8) CG4511-PA (GM03430p) (RE29349p),
partial (30%)
Length = 824
Score = 62.0 bits (149), Expect = 2e-10
Identities = 30/54 (55%), Positives = 40/54 (73%)
Frame = +2
Query: 132 KLKITVLPTLALIKNAKVDDYVVGFDELGGTDDFSTEDLEERLAKAQVIFLEGE 185
+L+I V+PT+ALIK++K D++VGF +LG DDFSTE LE RL A VI G+
Sbjct: 2 RLRIRVIPTMALIKDSKTKDFIVGFTDLGNCDDFSTEMLEWRLGTAGVINYSGD 163
>TC205050 similar to UP|Q6PV94 (Q6PV94) Thioredoxin, complete
Length = 756
Score = 50.1 bits (118), Expect = 8e-07
Identities = 25/80 (31%), Positives = 46/80 (57%), Gaps = 2/80 (2%)
Frame = +1
Query: 78 FFSVVKASDRVVCHFFRENW--PCKVADKHLGVLAKQHIETRFVKINAEKSPFLAEKLKI 135
+F+ +K +D++V F +W PCK + + +A + + FVKI+ ++ P +A++ ++
Sbjct: 205 YFNEIKDTDKLVVIDFSASWCGPCKFIEPAIHAMADKFNDVDFVKIDVDELPDVAQEFQV 384
Query: 136 TVLPTLALIKNAKVDDYVVG 155
+PT L K K D VVG
Sbjct: 385 QAMPTFVLWKKGKEVDKVVG 444
>BU080946 weakly similar to GP|25990392|gb thioredoxin h {Brassica rapa},
partial (76%)
Length = 409
Score = 47.4 bits (111), Expect = 5e-06
Identities = 26/79 (32%), Positives = 41/79 (50%), Gaps = 2/79 (2%)
Frame = +3
Query: 79 FSVVKASDRVVCHFFRENW--PCKVADKHLGVLAKQHIETRFVKINAEKSPFLAEKLKIT 136
F+ VK + ++V F +W PC+ +AK+ FVKI+ ++ P +A+ K+
Sbjct: 117 FNEVKETSKLVVIDFTASWCGPCRFIAPVFNEMAKKFSNAEFVKIDVDELPDVAKDFKVE 296
Query: 137 VLPTLALIKNAKVDDYVVG 155
+PT L K K D VVG
Sbjct: 297 AMPTFVLCKKGKEVDRVVG 353
>BM528134 similar to GP|27466896|gb| thioredoxin h {Pisum sativum}, partial
(52%)
Length = 427
Score = 47.4 bits (111), Expect = 5e-06
Identities = 25/82 (30%), Positives = 43/82 (51%), Gaps = 2/82 (2%)
Frame = +2
Query: 76 KDFFSVVKASDRVVCHFFRENW--PCKVADKHLGVLAKQHIETRFVKINAEKSPFLAEKL 133
K F K +++++ F W PCK D + A ++ F+KI+ ++ ++++
Sbjct: 32 KTHFDASKQTNKLMVIDFTATWCGPCKSMDPIIQEYAAKYTNVEFIKIDVDELMEVSQEF 211
Query: 134 KITVLPTLALIKNAKVDDYVVG 155
K+ +PT LIK KV D VVG
Sbjct: 212 KVQAMPTFILIKKGKVVDKVVG 277
>TC205049 UP|Q6PV94 (Q6PV94) Thioredoxin, complete
Length = 698
Score = 47.0 bits (110), Expect = 6e-06
Identities = 23/79 (29%), Positives = 45/79 (56%), Gaps = 2/79 (2%)
Frame = +1
Query: 79 FSVVKASDRVVCHFFRENW--PCKVADKHLGVLAKQHIETRFVKINAEKSPFLAEKLKIT 136
F+ +K ++++V F +W PCK + + ++++ + FVKI+ ++ P +A++ +
Sbjct: 187 FNELKETNKLVVIDFSASWCGPCKFIEPAIHAMSEKFTDVDFVKIDVDELPDVAKEFNVE 366
Query: 137 VLPTLALIKNAKVDDYVVG 155
+PT L K K D VVG
Sbjct: 367 AMPTFVLCKKGKEVDKVVG 423
>TC217516 weakly similar to UP|Q8GUR8 (Q8GUR8) Thioredoxin h, partial (58%)
Length = 764
Score = 47.0 bits (110), Expect = 6e-06
Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Frame = +2
Query: 79 FSVVKASDRVVCHFFRENW--PCKVADKHLGVLAKQHIETRFVKINAEKSPFLAEKLKIT 136
+ K +++++ F W PCK+ D + A + + F+KI+ E+ +++ L++
Sbjct: 209 YKATKETNKLMVLDFTATWCGPCKLMDPVIQEFAGNYTDVDFIKIDVEELTEVSQALQVY 388
Query: 137 VLPTLALIKNAKVDDYVVG 155
LPT L+K KV D VVG
Sbjct: 389 QLPTFILVKKGKVADRVVG 445
>TC206566 weakly similar to UP|Q6VBI6 (Q6VBI6) Thioredoxin H2, partial (78%)
Length = 921
Score = 44.3 bits (103), Expect = 4e-05
Identities = 23/79 (29%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Frame = +1
Query: 79 FSVVKASDRVVCHFFRENW--PCKVADKHLGVLAKQHIETRFVKINAEKSPFLAEKLKIT 136
F +K +++++ F +W PCK+ D + A ++ + FVKI+ ++ +++ ++
Sbjct: 217 FDALKQTNKLMVVDFTASWCGPCKLMDPVIQEFATKYRDVEFVKIDVDELMEVSQHYQVQ 396
Query: 137 VLPTLALIKNAKVDDYVVG 155
+PT LIK V D VVG
Sbjct: 397 GMPTFMLIKKGNVADKVVG 453
>TC204597 homologue to UP|Q9M5J3 (Q9M5J3) Beta galactosidase, partial (14%)
Length = 1372
Score = 41.6 bits (96), Expect = 3e-04
Identities = 27/96 (28%), Positives = 49/96 (50%), Gaps = 2/96 (2%)
Frame = +1
Query: 83 KASDRVVCHFFRENW--PCKVADKHLGVLAKQHIETRFVKINAEKSPFLAEKLKITVLPT 140
K S +++ F +W PC+ L +AK+ E F+K++ ++ +AE+ I +PT
Sbjct: 154 KDSKKLIVVDFTASWCGPCRFMAPVLAEIAKKTPELIFLKVDVDEVRPVAEEYSIEAMPT 333
Query: 141 LALIKNAKVDDYVVGFDELGGTDDFSTEDLEERLAK 176
+K+ ++ D VVG S +DL+ +AK
Sbjct: 334 FLFLKDGEIVDKVVG---------ASKDDLQATIAK 414
>CD398005
Length = 693
Score = 40.8 bits (94), Expect = 5e-04
Identities = 25/85 (29%), Positives = 46/85 (53%), Gaps = 3/85 (3%)
Frame = -3
Query: 74 SEKDFFSVVKASDRVVCHFFRENW--PCKVADKHLGVLAKQHI-ETRFVKINAEKSPFLA 130
++ ++ S+V S+ V F W PC++ + LAK++ + + K+N ++SP A
Sbjct: 523 TDANWLSLVIESESPVLVEFWAPWCGPCRMIHPIIDELAKEYTGKLKCYKLNTDESPSTA 344
Query: 131 EKLKITVLPTLALIKNAKVDDYVVG 155
K I +PT+ + KN + D V+G
Sbjct: 343 TKYGIRSIPTVIIFKNGEKKDTVIG 269
>TC224616 similar to UP|THM4_ARATH (Q9SEU6) Thioredoxin M-type 4, chloroplast
precursor (TRX-M4), partial (58%)
Length = 869
Score = 40.8 bits (94), Expect = 5e-04
Identities = 25/85 (29%), Positives = 46/85 (53%), Gaps = 3/85 (3%)
Frame = +3
Query: 74 SEKDFFSVVKASDRVVCHFFRENW--PCKVADKHLGVLAKQHI-ETRFVKINAEKSPFLA 130
++ ++ S+V S+ V F W PC++ + LAKQ+ + + K+N ++SP A
Sbjct: 339 TDANWQSLVLESESAVLVEFWAPWCGPCRMIHPIIDELAKQYAGKLKCYKLNTDESPSTA 518
Query: 131 EKLKITVLPTLALIKNAKVDDYVVG 155
+ I +PT+ + KN + D V+G
Sbjct: 519 TRYGIRSIPTVMIFKNGEKKDTVIG 593
>TC224685 similar to UP|THM4_ARATH (Q9SEU6) Thioredoxin M-type 4, chloroplast
precursor (TRX-M4), partial (55%)
Length = 1169
Score = 40.0 bits (92), Expect = 8e-04
Identities = 24/85 (28%), Positives = 46/85 (53%), Gaps = 3/85 (3%)
Frame = +3
Query: 74 SEKDFFSVVKASDRVVCHFFRENW--PCKVADKHLGVLAKQHI-ETRFVKINAEKSPFLA 130
++ ++ S+V S+ V F W PC++ + LAK+++ + K+N ++SP A
Sbjct: 495 TDANWQSLVLESESPVLVEFWAPWCGPCRMIHPIIDELAKEYVGRLKCYKLNTDESPSTA 674
Query: 131 EKLKITVLPTLALIKNAKVDDYVVG 155
+ I +PT+ + KN + D V+G
Sbjct: 675 TRYGIRSIPTVIIFKNGEKKDTVIG 749
>TC204598 similar to UP|Q8GUR9 (Q8GUR9) Thioredoxin h, partial (98%)
Length = 610
Score = 39.7 bits (91), Expect = 0.001
Identities = 21/75 (28%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Frame = +2
Query: 83 KASDRVVCHFFRENW--PCKVADKHLGVLAKQHIETRFVKINAEKSPFLAEKLKITVLPT 140
K S +++ F +W PC+ L +A+ + F+K++ ++ +AE+ I +PT
Sbjct: 125 KDSQKLIVVDFTASWCGPCRFIAPVLAEIARHTPQVIFLKVDVDEVRPVAEEYSIEAMPT 304
Query: 141 LALIKNAKVDDYVVG 155
+K+ K+ D VVG
Sbjct: 305 FLFLKDGKIVDKVVG 349
>TC224651 weakly similar to UP|THIM_BRANA (Q9XGS0) Thioredoxin M-type,
chloroplast precursor (TRX-M), partial (67%)
Length = 848
Score = 39.7 bits (91), Expect = 0.001
Identities = 25/85 (29%), Positives = 46/85 (53%), Gaps = 3/85 (3%)
Frame = +2
Query: 74 SEKDFFSVVKASDRVVCHFFRENW--PCKVADKHLGVLAKQHI-ETRFVKINAEKSPFLA 130
++ ++ S+V S+ V F W PC++ + LAK++ + + K+N ++SP A
Sbjct: 311 TDANWQSLVIESESPVLVEFWAPWCGPCRMIHPIIDELAKEYTGKLKCYKLNTDESPSTA 490
Query: 131 EKLKITVLPTLALIKNAKVDDYVVG 155
K I +PT+ + KN + D V+G
Sbjct: 491 TKYGIRSIPTVIIFKNGEKKDTVIG 565
>TC212647 weakly similar to UP|Q8L9A6 (Q8L9A6) Thioredoxin, partial (64%)
Length = 470
Score = 39.7 bits (91), Expect = 0.001
Identities = 23/93 (24%), Positives = 45/93 (47%), Gaps = 2/93 (2%)
Frame = +1
Query: 69 YSELPSEKDFFSVVKASDRVVCHFFRENW--PCKVADKHLGVLAKQHIETRFVKINAEKS 126
+ S + ++ +K S + V FF +W PCK +A ++ +VKI+ E+
Sbjct: 112 FDSAESWQSYWKEIKDSPKPVVIFFTASWCGPCKFITPLFHEMAAKYPNADYVKIDVEEL 291
Query: 127 PFLAEKLKITVLPTLALIKNAKVDDYVVGFDEL 159
+AE+ ++ +PT K K + VG +++
Sbjct: 292 SGVAEEYEVRAMPTFVAWKEGKEVERFVGANKV 390
>TC206740 similar to UP|Q93X83 (Q93X83) Hsp70 interacting protein/thioredoxin
chimera, partial (46%)
Length = 932
Score = 39.7 bits (91), Expect = 0.001
Identities = 27/94 (28%), Positives = 47/94 (49%), Gaps = 2/94 (2%)
Frame = +2
Query: 67 GDYSELPSEKDFFSVVKASDRVVCHFFRENW--PCKVADKHLGVLAKQHIETRFVKINAE 124
G +S EK + K S R+ +F W PC+ LA+++ + F+K++ +
Sbjct: 311 GIHSSGELEKKLSAASKTS-RLAILYFTATWCGPCRFISPIYTSLAEKYPKVVFLKVDID 487
Query: 125 KSPFLAEKLKITVLPTLALIKNAKVDDYVVGFDE 158
++ +A I+ +PT +KN K D VVG D+
Sbjct: 488 EARDVAAGWNISSVPTFFFVKNGKEVDSVVGADK 589
>BG363241 weakly similar to GP|10177522|dbj contains similarity to ATP
binding protein associated with cell
differentiation~gene_id:K1F13.6, partial (14%)
Length = 228
Score = 38.5 bits (88), Expect = 0.002
Identities = 21/59 (35%), Positives = 30/59 (50%)
Frame = +1
Query: 35 LDSDDLESLRERRLHQMKKMAEKRNRWISLGHGDYSELPSEKDFFSVVKASDRVVCHFF 93
L + E+L R+ + K A W +G G++ E+P E DF V D V+CHFF
Sbjct: 34 LXDPEXENLPAARIAAL*KEAXLLLDWQKIGPGEFREVP-EGDFLGEVTGCDLVICHFF 207
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.316 0.132 0.362
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,932,746
Number of Sequences: 63676
Number of extensions: 80514
Number of successful extensions: 513
Number of sequences better than 10.0: 71
Number of HSP's better than 10.0 without gapping: 511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 511
length of query: 213
length of database: 12,639,632
effective HSP length: 93
effective length of query: 120
effective length of database: 6,717,764
effective search space: 806131680
effective search space used: 806131680
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)
Lotus: description of TM0200.8