BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0200.6
(398 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC226221 homologue to UP|Q9SEL1 (Q9SEL1) Seed maturation protein... 537 e-153
TC226222 homologue to UP|Q9SEL1 (Q9SEL1) Seed maturation protein... 533 e-152
TC226223 similar to UP|Q9SEL1 (Q9SEL1) Seed maturation protein P... 159 3e-39
TC209694 similar to UP|Q8LGA2 (Q8LGA2) Seed maturation-like prot... 124 1e-28
TC209693 similar to UP|Q8LGA2 (Q8LGA2) Seed maturation-like prot... 94 1e-19
TC218692 similar to UP|Q9SH45 (Q9SH45) F2K11.3, partial (47%) 70 2e-12
CK768534 68 8e-12
TC218691 similar to UP|Q9SH45 (Q9SH45) F2K11.3, partial (35%) 61 1e-09
TC219153 similar to UP|Q97HY8 (Q97HY8) Uncharacterized secreted ... 46 3e-05
TC219152 45 6e-05
TC218396 similar to UP|Q39492 (Q39492) WP6 protein precursor, pa... 37 0.020
BI470331 36 0.035
TC206754 weakly similar to UP|GUN4_ARATH (Q9LX31) Tetrapyrrole-b... 34 0.13
TC218331 similar to UP|Q9LRZ7 (Q9LRZ7) Arabidopsis thaliana geno... 33 0.17
TC228710 similar to UP|Q6NQ98 (Q6NQ98) At5g58020, partial (41%) 33 0.23
TC217993 similar to UP|THRC_SOLTU (Q9MT28) Threonine synthase, c... 33 0.23
TC204753 homologue to UP|Q8W557 (Q8W557) UDP-glucose pyrophospho... 33 0.30
BM308345 33 0.30
BM893063 32 0.39
TC233319 weakly similar to UP|Q9LM24 (Q9LM24) T10O22.23, partial... 32 0.66
>TC226221 homologue to UP|Q9SEL1 (Q9SEL1) Seed maturation protein PM23
(Fragment), complete
Length = 1663
Score = 537 bits (1384), Expect = e-153
Identities = 293/402 (72%), Positives = 325/402 (79%), Gaps = 11/402 (2%)
Frame = +1
Query: 8 RQREEREGKSGCIG----GCSSWQPPFPSS-PLFLFLFSTSALHPPHPSLSLLSATTQTL 62
R RE REGK + G ++ SS PLF P+PSL S + +
Sbjct: 28 RHRERREGKVVLVVVLLIGMATLSSILSSSLPLF------HRYPNPNPSLFRPSLSL-SF 186
Query: 63 QNRNPLSWFLLPQPPPSGISPPNPR----ELIQEIEPLDVSHIQKDVPPTTADAMKRTIS 118
P S FL+ + + + ELIQEIEPLDVSHIQKDVPPTTADAMKRTIS
Sbjct: 187 SRTKPRSPFLVLAASSHDFASNSKKSVLTELIQEIEPLDVSHIQKDVPPTTADAMKRTIS 366
Query: 119 GMLGLLPSDQFHVVIEALWEPLSKLLISSMMTGYTLRNAEYRLCLEKNLDMCERDLEKPK 178
GMLGLLPSDQFHVVIEALWEPLSKLLISSMMTGYTLRN EYRLCLEKNLDM E D+EKPK
Sbjct: 367 GMLGLLPSDQFHVVIEALWEPLSKLLISSMMTGYTLRNVEYRLCLEKNLDMFEGDIEKPK 546
Query: 179 AESTPMDLQGLLHDSVNVIDFGRKSNLSSKVEKVHEDVDIQDLGEISSEAQQYILNLQSR 238
AES +DLQ L+HDSVN I+FG+ NLSSKVEK+HE+ DIQ+LGEIS+EAQQYI NLQSR
Sbjct: 547 AESMKVDLQRLMHDSVNAIEFGKNKNLSSKVEKLHEEADIQELGEISAEAQQYIFNLQSR 726
Query: 239 LSSMKKELHEVKRKNAALQMQQFVGEEKNDLLDYLRSLQPEQVAQLSEFTSPELKEIIIS 298
LSSMKKELHEVKRK+AALQMQQFVGEEKNDLLDYLRSLQPEQVAQLSEFTSPELK+ I+S
Sbjct: 727 LSSMKKELHEVKRKSAALQMQQFVGEEKNDLLDYLRSLQPEQVAQLSEFTSPELKDTILS 906
Query: 299 VVHGLLATLSPKMHSKPSTMSENATIGTANAGSEDCAEVVENSSIQFHPVISLTRDYLAR 358
VVHGLLATLSPKMHSKPSTMSEN T+G NAGSEDCAEV+ENS++QF PVISLTRDYLAR
Sbjct: 907 VVHGLLATLSPKMHSKPSTMSENTTVGATNAGSEDCAEVLENSALQFQPVISLTRDYLAR 1086
Query: 359 LLFWCMLLGHYLRGLEYRVDLTELLSLTSDAEN--NGNEQIA 398
LLFWCMLLGHYLRGLE R++LT+LLSLTSDAEN +G++ IA
Sbjct: 1087LLFWCMLLGHYLRGLECRLELTDLLSLTSDAENDASGSQPIA 1212
>TC226222 homologue to UP|Q9SEL1 (Q9SEL1) Seed maturation protein PM23
(Fragment), partial (92%)
Length = 1616
Score = 533 bits (1372), Expect = e-152
Identities = 287/394 (72%), Positives = 317/394 (79%), Gaps = 9/394 (2%)
Frame = +1
Query: 10 REEREGKSGCIGGCSSWQPPFPSSPLFLFLFSTSALHPPHPSL-----SLLSATTQTLQN 64
R E+ KSGC SS + L LF P+PSL SL + ++T
Sbjct: 7 RREKGRKSGCWWLSSSLLMGMATLSSSLPLFHRYPNPNPNPSLFRPSLSLSFSFSRTKPR 186
Query: 65 RNPLSWFLLPQPPPSGISPPNPR----ELIQEIEPLDVSHIQKDVPPTTADAMKRTISGM 120
R P FL+ + + + ELIQEIEPLDVSHIQKDVPPTT DAMKRTISGM
Sbjct: 187 RAP---FLVLASSSHDFTSNSKKSVLTELIQEIEPLDVSHIQKDVPPTTTDAMKRTISGM 357
Query: 121 LGLLPSDQFHVVIEALWEPLSKLLISSMMTGYTLRNAEYRLCLEKNLDMCERDLEKPKAE 180
LGLLPSDQFHVVIEALWEPLSKLLISSMMTGYTL N EYRLCLEKNLDM E D+EKPKAE
Sbjct: 358 LGLLPSDQFHVVIEALWEPLSKLLISSMMTGYTLHNVEYRLCLEKNLDMFEGDIEKPKAE 537
Query: 181 STPMDLQGLLHDSVNVIDFGRKSNLSSKVEKVHEDVDIQDLGEISSEAQQYILNLQSRLS 240
ST +DLQGL+HDSVNVIDFGR +LSSKVEK+HED DIQ+LG+IS+EA QYI NLQSRLS
Sbjct: 538 STKVDLQGLMHDSVNVIDFGRDKSLSSKVEKLHEDADIQELGDISAEALQYIFNLQSRLS 717
Query: 241 SMKKELHEVKRKNAALQMQQFVGEEKNDLLDYLRSLQPEQVAQLSEFTSPELKEIIISVV 300
SMKKELHEVKRK+AALQMQQFVGEEKNDLLDYLRSLQPEQVAQLSEFTSPELK+ I+ VV
Sbjct: 718 SMKKELHEVKRKSAALQMQQFVGEEKNDLLDYLRSLQPEQVAQLSEFTSPELKDTILFVV 897
Query: 301 HGLLATLSPKMHSKPSTMSENATIGTANAGSEDCAEVVENSSIQFHPVISLTRDYLARLL 360
HGLLATLSPKMHSKPST+SEN T+G N G+EDCAEVVENS+ QF PV+SLTRDYLARLL
Sbjct: 898 HGLLATLSPKMHSKPSTISENTTVGATNVGNEDCAEVVENSAHQFQPVVSLTRDYLARLL 1077
Query: 361 FWCMLLGHYLRGLEYRVDLTELLSLTSDAENNGN 394
FWCMLLGHYLRGLE R+DLT+LLSLTSD EN+ +
Sbjct: 1078FWCMLLGHYLRGLECRLDLTDLLSLTSDPENDAS 1179
>TC226223 similar to UP|Q9SEL1 (Q9SEL1) Seed maturation protein PM23
(Fragment), partial (25%)
Length = 889
Score = 159 bits (401), Expect = 3e-39
Identities = 75/94 (79%), Positives = 84/94 (88%)
Frame = +3
Query: 301 HGLLATLSPKMHSKPSTMSENATIGTANAGSEDCAEVVENSSIQFHPVISLTRDYLARLL 360
HGLLATLSPKMHSKPST+SEN T+G N G+EDCAEVVENS+ QF PV+SLTRDYLARLL
Sbjct: 3 HGLLATLSPKMHSKPSTISENTTVGATNVGNEDCAEVVENSAHQFQPVVSLTRDYLARLL 182
Query: 361 FWCMLLGHYLRGLEYRVDLTELLSLTSDAENNGN 394
FWCMLLGHYLRGLE R+DLT+ LSLTSD EN+ +
Sbjct: 183 FWCMLLGHYLRGLECRLDLTDWLSLTSDPENDAS 284
Score = 48.1 bits (113), Expect = 7e-06
Identities = 22/35 (62%), Positives = 25/35 (70%)
Frame = +1
Query: 363 CMLLGHYLRGLEYRVDLTELLSLTSDAENNGNEQI 397
CMLLG YLRGLE R+DLT+LL L SD EN +
Sbjct: 436 CMLLGRYLRGLECRLDLTDLLCLASDPENEDQSSV 540
>TC209694 similar to UP|Q8LGA2 (Q8LGA2) Seed maturation-like protein, partial
(40%)
Length = 810
Score = 124 bits (310), Expect = 1e-28
Identities = 78/197 (39%), Positives = 117/197 (58%)
Frame = +2
Query: 89 LIQEIEPLDVSHIQKDVPPTTADAMKRTISGMLGLLPSDQFHVVIEALWEPLSKLLISSM 148
+++ IEPLD S I K V P D+MK+TIS MLGLLPSD F V I PL +LL SS+
Sbjct: 233 MLRRIEPLDNSAISKGVSPAARDSMKQTISTMLGLLPSDHFAVTITVSKHPLHRLLFSSI 412
Query: 149 MTGYTLRNAEYRLCLEKNLDMCERDLEKPKAESTPMDLQGLLHDSVNVIDFGRKSNLSSK 208
+TGYTL NAEYR+ L +NLD+ E E+ L+ + D + K + +
Sbjct: 413 VTGYTLWNAEYRMSLTRNLDISGSRDEGSDCETRSEVLE--VKDGAKTVG-DEKIEVVND 583
Query: 209 VEKVHEDVDIQDLGEISSEAQQYILNLQSRLSSMKKELHEVKRKNAALQMQQFVGEEKND 268
+E ++++ G++ +A YI LQS L+S+ +EL+ +K+ +Q++ G + N+
Sbjct: 584 LESCSCSGNLKEFGDLPPQALSYIQQLQSELTSVTEELN--AQKHEMMQLEYDKG-KWNN 754
Query: 269 LLDYLRSLQPEQVAQLS 285
L++YLRSL P V +LS
Sbjct: 755 LVEYLRSLDPNMVTELS 805
Score = 29.6 bits (65), Expect = 2.5
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = +2
Query: 342 SIQFHPVISLTRDYLARLLFWCMLLGHYLRGLEYRVDLTELLSLTSDAENNGN 394
S F I++++ L RLLF ++ G+ L EYR+ LT L ++ + +
Sbjct: 344 SDHFAVTITVSKHPLHRLLFSSIVTGYTLWNAEYRMSLTRNLDISGSRDEGSD 502
>TC209693 similar to UP|Q8LGA2 (Q8LGA2) Seed maturation-like protein, partial
(25%)
Length = 646
Score = 93.6 bits (231), Expect = 1e-19
Identities = 62/149 (41%), Positives = 77/149 (51%), Gaps = 7/149 (4%)
Frame = +1
Query: 28 PPFPSSPLFLFLFSTSALHPPHPSLSLLSATTQTLQNRNPLSWFLLPQPPPSGISPPN-- 85
P F LF FL PP P S+L T+ F+ +S N
Sbjct: 73 PRFTDRSLFQFLPPKPPPFPPPPPPSVLLPLTRRRGG------FISSCLSDDAVSTRNFD 234
Query: 86 -----PRELIQEIEPLDVSHIQKDVPPTTADAMKRTISGMLGLLPSDQFHVVIEALWEPL 140
+++ IEPLD S I K V P D+MK+TIS MLGLLPSD F V + PL
Sbjct: 235 RGFTVIAAMLRRIEPLDNSAISKGVSPAARDSMKQTISTMLGLLPSDHFAVTVTVSKHPL 414
Query: 141 SKLLISSMMTGYTLRNAEYRLCLEKNLDM 169
+LL SS++TGYTL NAEYR+ L +NLDM
Sbjct: 415 HRLLFSSIVTGYTLWNAEYRMSLARNLDM 501
Score = 28.9 bits (63), Expect = 4.3
Identities = 17/54 (31%), Positives = 30/54 (55%)
Frame = +1
Query: 342 SIQFHPVISLTRDYLARLLFWCMLLGHYLRGLEYRVDLTELLSLTSDAENNGNE 395
S F +++++ L RLLF ++ G+ L EYR+ L L + S + N G++
Sbjct: 370 SDHFAVTVTVSKHPLHRLLFSSIVTGYTLWNAEYRMSLARNLDM-SGSRNEGSD 528
>TC218692 similar to UP|Q9SH45 (Q9SH45) F2K11.3, partial (47%)
Length = 644
Score = 70.1 bits (170), Expect = 2e-12
Identities = 46/143 (32%), Positives = 72/143 (50%), Gaps = 4/143 (2%)
Frame = +1
Query: 30 FPSSPLFLFLFSTSALHPPHPSLSLLSATTQTLQNRNPLSWFLLPQPPPSGISPPNPREL 89
FPS + FS + L + + + N NP S PP+G + RE+
Sbjct: 208 FPSRSVSSISFSRNLKPKGRFGLRVEAYDSSNNDNSNPAS--AGDSKPPNGTLSKSRREI 381
Query: 90 IQE----IEPLDVSHIQKDVPPTTADAMKRTISGMLGLLPSDQFHVVIEALWEPLSKLLI 145
+ E ++P + K P DAM++T++ M+G LP F V I + E L++L+
Sbjct: 382 LLEYVKNVQPEFMELFVKRAPQQVVDAMRQTVTNMIGTLPPQFFAVTITTVAENLAQLMY 561
Query: 146 SSMMTGYTLRNAEYRLCLEKNLD 168
S MMTGY +NA+YRL L++ L+
Sbjct: 562 SIMMTGYMFKNAQYRLELQEGLE 630
>CK768534
Length = 175
Score = 67.8 bits (164), Expect = 8e-12
Identities = 31/48 (64%), Positives = 38/48 (78%)
Frame = -3
Query: 312 HSKPSTMSENATIGTANAGSEDCAEVVENSSIQFHPVISLTRDYLARL 359
H KPST+SEN T+G N G++D EVVENS+ Q PV+SLTRDYLAR+
Sbjct: 173 HYKPSTISENTTVGATNVGNDDYPEVVENSAHQSQPVVSLTRDYLARM 30
>TC218691 similar to UP|Q9SH45 (Q9SH45) F2K11.3, partial (35%)
Length = 441
Score = 60.8 bits (146), Expect = 1e-09
Identities = 29/74 (39%), Positives = 45/74 (60%)
Frame = +1
Query: 88 ELIQEIEPLDVSHIQKDVPPTTADAMKRTISGMLGLLPSDQFHVVIEALWEPLSKLLISS 147
E ++ ++P + K P DAM++T++ M+G LP F V I + E L++L+ S
Sbjct: 217 EYVKNVQPEFMELFVKRAPQQVVDAMRQTVTNMIGTLPPQFFAVTITTVAENLAQLMYSI 396
Query: 148 MMTGYTLRNAEYRL 161
MMTGY +NA+YRL
Sbjct: 397 MMTGYMFKNAQYRL 438
>TC219153 similar to UP|Q97HY8 (Q97HY8) Uncharacterized secreted protein,
homolog YXKC Bacillus subtilis, partial (6%)
Length = 684
Score = 46.2 bits (108), Expect = 3e-05
Identities = 34/135 (25%), Positives = 63/135 (46%)
Frame = +2
Query: 245 ELHEVKRKNAALQMQQFVGEEKNDLLDYLRSLQPEQVAQLSEFTSPELKEIIISVVHGLL 304
EL E + + + Q+ + +N+LL+YL+SL+P + +L+ ++ + + + LL
Sbjct: 116 ELLEAEIEELSCQVGRQTSNAQNELLEYLKSLEPRNLKELTSTAGEDVVFAMNAFIKRLL 295
Query: 305 ATLSPKMHSKPSTMSENATIGTANAGSEDCAEVVENSSIQFHPVISLTRDYLARLLFWCM 364
A S PS M + T E S+ + LA+LL+W M
Sbjct: 296 AV------SDPSQMKTSVT---------------ETSAAE-----------LAKLLYWLM 379
Query: 365 LLGHYLRGLEYRVDL 379
++G+ +R +E R D+
Sbjct: 380 VVGYSIRNIEVRYDM 424
Score = 35.8 bits (81), Expect = 0.035
Identities = 26/95 (27%), Positives = 42/95 (43%), Gaps = 1/95 (1%)
Frame = +2
Query: 88 ELIQEIEPLDVSHIQKDVPPTTADAMKRTISGMLGLL-PSDQFHVVIEALWEPLSKLLIS 146
E ++ +EP ++ + AM I +L + PS V E L+KLL
Sbjct: 194 EYLKSLEPRNLKELTSTAGEDVVFAMNAFIKRLLAVSDPSQMKTSVTETSAAELAKLLYW 373
Query: 147 SMMTGYTLRNAEYRLCLEKNLDMCERDLEKPKAES 181
M+ GY++RN E R +E+ + E P E+
Sbjct: 374 LMVVGYSIRNIEVRYDMERVFGAPPKLAELPPGEN 478
>TC219152
Length = 743
Score = 45.1 bits (105), Expect = 6e-05
Identities = 35/136 (25%), Positives = 63/136 (45%)
Frame = +1
Query: 248 EVKRKNAALQMQQFVGEEKNDLLDYLRSLQPEQVAQLSEFTSPELKEIIISVVHGLLATL 307
E++ N + Q G+ N+LL+YL+SL+P + +L+ ++ + + + LLA
Sbjct: 121 EIEELNRQVGRQSSNGQ--NELLEYLKSLEPRNLKELTSSAGEDVVFAMNTFIKRLLAV- 291
Query: 308 SPKMHSKPSTMSENATIGTANAGSEDCAEVVENSSIQFHPVISLTRDYLARLLFWCMLLG 367
S PS M + T E S+ + LA+LL+W M++G
Sbjct: 292 -----SDPSQMKTSVT---------------ETSAAE-----------LAKLLYWLMVVG 378
Query: 368 HYLRGLEYRVDLTELL 383
+ +R +E R D+ +L
Sbjct: 379 YSIRNIEVRYDMERVL 426
Score = 37.7 bits (86), Expect = 0.009
Identities = 27/95 (28%), Positives = 43/95 (44%), Gaps = 1/95 (1%)
Frame = +1
Query: 88 ELIQEIEPLDVSHIQKDVPPTTADAMKRTISGMLGLL-PSDQFHVVIEALWEPLSKLLIS 146
E ++ +EP ++ + AM I +L + PS V E L+KLL
Sbjct: 184 EYLKSLEPRNLKELTSSAGEDVVFAMNTFIKRLLAVSDPSQMKTSVTETSAAELAKLLYW 363
Query: 147 SMMTGYTLRNAEYRLCLEKNLDMCERDLEKPKAES 181
M+ GY++RN E R +E+ L + E P E+
Sbjct: 364 LMVVGYSIRNIEVRYDMERVLGTPPKLAELPPGEN 468
>TC218396 similar to UP|Q39492 (Q39492) WP6 protein precursor, partial (7%)
Length = 574
Score = 36.6 bits (83), Expect = 0.020
Identities = 25/81 (30%), Positives = 40/81 (48%), Gaps = 5/81 (6%)
Frame = +3
Query: 37 LFLFS----TSALHPPHPSLSLLSATTQTLQNRNPLSWFLLPQPPPSG-ISPPNPRELIQ 91
+F+FS + A P P+ +AT +++P + + P P PSG ISPP+P L+
Sbjct: 108 IFVFSGVAQSPASSPESPATPPKAATPSPSSSKSPPA--VSPTPSPSGGISPPSPPSLVP 281
Query: 92 EIEPLDVSHIQKDVPPTTADA 112
P +S D P + +A
Sbjct: 282 ASSPSSISSPPSDAPAPSENA 344
>BI470331
Length = 421
Score = 35.8 bits (81), Expect = 0.035
Identities = 25/64 (39%), Positives = 30/64 (46%)
Frame = -3
Query: 6 PNRQREEREGKSGCIGGCSSWQPPFPSSPLFLFLFSTSALHPPHPSLSLLSATTQTLQNR 65
P +R + CI SWQ FP SP PPH LSLLS TQT Q++
Sbjct: 236 PRIRRANPSQRDNCIHHPHSWQRNFPHSP------------PPHGRLSLLS*QTQT-QSK 96
Query: 66 NPLS 69
+ LS
Sbjct: 95 SSLS 84
>TC206754 weakly similar to UP|GUN4_ARATH (Q9LX31) Tetrapyrrole-binding
protein, chloroplast precursor (Genomes uncoulped 4),
partial (62%)
Length = 1115
Score = 33.9 bits (76), Expect = 0.13
Identities = 23/65 (35%), Positives = 29/65 (44%)
Frame = +1
Query: 31 PSSPLFLFLFSTSALHPPHPSLSLLSATTQTLQNRNPLSWFLLPQPPPSGISPPNPRELI 90
P +P FS++ LHPP+ + SL QT + P LP PPP PP P
Sbjct: 118 PQTPHPPHHFSSNPLHPPYTTTSLSRTLLQTHISPIPSLKPHLPPPPPK---PPRPSTSS 288
Query: 91 QEIEP 95
I P
Sbjct: 289 ATISP 303
>TC218331 similar to UP|Q9LRZ7 (Q9LRZ7) Arabidopsis thaliana genomic DNA,
chromosome 3, TAC clone:K13N2, partial (16%)
Length = 685
Score = 33.5 bits (75), Expect = 0.17
Identities = 20/38 (52%), Positives = 22/38 (57%)
Frame = +3
Query: 32 SSPLFLFLFSTSALHPPHPSLSLLSATTQTLQNRNPLS 69
SSP FLF F + PP+PSL L LQNR PLS
Sbjct: 42 SSPPFLFSFLSPKPFPPNPSLPL-----PQLQNRTPLS 140
>TC228710 similar to UP|Q6NQ98 (Q6NQ98) At5g58020, partial (41%)
Length = 846
Score = 33.1 bits (74), Expect = 0.23
Identities = 22/63 (34%), Positives = 30/63 (46%)
Frame = +1
Query: 24 SSWQPPFPSSPLFLFLFSTSALHPPHPSLSLLSATTQTLQNRNPLSWFLLPQPPPSGISP 83
S PP S+P L T+A PP PS + +AT+ R+P W + PSG
Sbjct: 286 SPLSPPSLSAPASLAAAETAA--PPEPSPA--TATSTCTPTRSPTRWTPMNSVSPSGTIA 453
Query: 84 PNP 86
P+P
Sbjct: 454 PSP 462
>TC217993 similar to UP|THRC_SOLTU (Q9MT28) Threonine synthase, chloroplast
precursor (TS) , partial (21%)
Length = 577
Score = 33.1 bits (74), Expect = 0.23
Identities = 19/58 (32%), Positives = 26/58 (44%)
Frame = +1
Query: 61 TLQNRNPLSWFLLPQPPPSGISPPNPRELIQEIEPLDVSHIQKDVPPTTADAMKRTIS 118
+L PL+ LP PPP+ +S PNP L P ++ PPT A + S
Sbjct: 106 SLSLSKPLNPTRLPNPPPTSLSAPNPPSLRTTTPPPSIA-----APPTRTSATRPAAS 264
>TC204753 homologue to UP|Q8W557 (Q8W557) UDP-glucose pyrophosphorylase,
partial (98%)
Length = 1792
Score = 32.7 bits (73), Expect = 0.30
Identities = 26/66 (39%), Positives = 30/66 (45%)
Frame = +3
Query: 21 GGCSSWQPPFPSSPLFLFLFSTSALHPPHPSLSLLSATTQTLQNRNPLSWFLLPQPPPSG 80
G C PP PLF L S PHPSLSL TL + P W LP+ P
Sbjct: 24 GSCQFLNPP--PHPLFYSLLLLS----PHPSLSL------TLLSNLPPQWPPLPRNSPLS 167
Query: 81 ISPPNP 86
+PP+P
Sbjct: 168-NPPSP 182
>BM308345
Length = 434
Score = 32.7 bits (73), Expect = 0.30
Identities = 29/101 (28%), Positives = 40/101 (38%), Gaps = 20/101 (19%)
Frame = +3
Query: 23 CSSWQPPFPSSPLF----LFLFSTSALHPPHPSLSL------LSATTQTLQNRNPLSWFL 72
C P P P + LFS S+ HP PS + LS + ++ LS F
Sbjct: 72 CKHANSPPPPKPKL*ATKIPLFSLSS-HPSSPSTKIVTNPISLSLPQNKTKKKSILSPFS 248
Query: 73 LPQPPPSGISP----------PNPRELIQEIEPLDVSHIQK 103
P PP + I P PNP +I+P + H +K
Sbjct: 249 TPFPPKNPIFPHTHLPKSLLSPNPNPQFPQIQPKRIKHTKK 371
>BM893063
Length = 422
Score = 32.3 bits (72), Expect = 0.39
Identities = 19/56 (33%), Positives = 25/56 (43%)
Frame = +2
Query: 31 PSSPLFLFLFSTSALHPPHPSLSLLSATTQTLQNRNPLSWFLLPQPPPSGISPPNP 86
PS P L FST AL PP+PS + + + LP PP + + NP
Sbjct: 32 PSFPFGLGNFSTEALIPPYPSTAAHTPFCCFFSSNMGRETMCLPTPPTTATTTVNP 199
>TC233319 weakly similar to UP|Q9LM24 (Q9LM24) T10O22.23, partial (20%)
Length = 875
Score = 31.6 bits (70), Expect = 0.66
Identities = 24/66 (36%), Positives = 28/66 (42%), Gaps = 6/66 (9%)
Frame = +3
Query: 31 PSSPLFLFLFSTSALHPPH------PSLSLLSATTQTLQNRNPLSWFLLPQPPPSGISPP 84
PSS + F HP P LL A+ Q R PL LLPQ P SP
Sbjct: 6 PSSHVHGFXXHVQVHHPSQ*TRLRLPXPRLLLASLQP--PRPPLDLLLLPQVSPLSSSPL 179
Query: 85 NPRELI 90
PRE++
Sbjct: 180QPREIV 197
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.315 0.132 0.380
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,707,103
Number of Sequences: 63676
Number of extensions: 345943
Number of successful extensions: 2945
Number of sequences better than 10.0: 126
Number of HSP's better than 10.0 without gapping: 2649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2883
length of query: 398
length of database: 12,639,632
effective HSP length: 99
effective length of query: 299
effective length of database: 6,335,708
effective search space: 1894376692
effective search space used: 1894376692
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 60 (27.7 bits)
Lotus: description of TM0200.6