TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0199.9
         (56 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC226374 similar to UP|VATC_ARATH (Q9SDS7) Vacuolar ATP synthase...    74  2e-14
TC226372 similar to UP|VATC_ARATH (Q9SDS7) Vacuolar ATP synthase...    71  1e-13
TC215978 weakly similar to UP|Q8S1K2 (Q8S1K2) PDI-like protein, ...    26  3.7
TC225163 emb|X02559.1|MIOBRN26 Oenothera berteriana mitochondria...    25  6.3
AW277331                                                               25  6.3
TC217335 similar to UP|GIC2_YEAST (Q06648) GTPase-interacting co...    25  8.3
TC206847 similar to GB|AAF76441.1|8569096|F2J10 ESTs gb|AI994059...    25  8.3

>TC226374 similar to UP|VATC_ARATH (Q9SDS7) Vacuolar ATP synthase subunit C
           (V-ATPase C subunit) (Vacuolar proton pump C subunit) ,
           partial (66%)
          Length = 1048

 Score = 73.6 bits (179), Expect = 2e-14
 Identities = 32/41 (78%), Positives = 36/41 (87%)
 Frame = +2

Query: 2   AVVWWVVSLPVHNSASELWNRLQQNVSKHSFDTPLYRFNIP 42
           A  +WVVSLPV NSAS LWN+LQ+ +SKHSFDTPLYRFNIP
Sbjct: 134 ATRYWVVSLPVQNSASTLWNKLQEQISKHSFDTPLYRFNIP 256


>TC226372 similar to UP|VATC_ARATH (Q9SDS7) Vacuolar ATP synthase subunit C
           (V-ATPase C subunit) (Vacuolar proton pump C subunit)
          , partial (45%)
          Length = 577

 Score = 70.9 bits (172), Expect(2) = 1e-13
 Identities = 31/39 (79%), Positives = 36/39 (91%), Gaps = 1/39 (2%)
 Frame = +2

Query: 5  WWVVSLPVHNSAS-ELWNRLQQNVSKHSFDTPLYRFNIP 42
          +W VSLPVHNSAS +LWN+LQ+ +SKHSFDTPLYRFNIP
Sbjct: 32 YWAVSLPVHNSASSQLWNQLQERISKHSFDTPLYRFNIP 148



 Score = 20.4 bits (41), Expect(2) = 1e-13
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = +3

Query: 42  PISGSEP*TLSA 53
           P S SEP*TLS+
Sbjct: 147 PTSASEP*TLSS 182


>TC215978 weakly similar to UP|Q8S1K2 (Q8S1K2) PDI-like protein, partial (34%)
          Length = 1554

 Score = 26.2 bits (56), Expect = 3.7
 Identities = 17/49 (34%), Positives = 26/49 (52%)
 Frame = +1

Query: 8    VSLPVHNSASELWNRLQQNVSKHSFDTPLYRFNIPISGSEP*TLSAMIS 56
            V++    SASELWN +       S+ TPL    I ++ S P  +++M S
Sbjct: 1225 VAMKCTQSASELWNAMTM-----SWWTPLVASRI*LTNSIPLAINSMSS 1356


>TC225163 emb|X02559.1|MIOBRN26 Oenothera berteriana mitochondrial gene for
           26S ribosomal RNA, partial (83%)
          Length = 3184

 Score = 25.4 bits (54), Expect = 6.3
 Identities = 7/27 (25%), Positives = 14/27 (50%)
 Frame = -2

Query: 6   WVVSLPVHNSASELWNRLQQNVSKHSF 32
           W    P+HN ++E W +  ++ +   F
Sbjct: 399 WFFHHPIHNKSNETWRKRSEHFAAEEF 319


>AW277331 
          Length = 276

 Score = 25.4 bits (54), Expect = 6.3
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 24  QQNVSKHSFDTPLYRFNIPISGSEP 48
           QQN+ +  FD  L +F+   S SEP
Sbjct: 91  QQNIDRREFDDDLKKFSSLPSNSEP 165


>TC217335 similar to UP|GIC2_YEAST (Q06648) GTPase-interacting component 2,
           partial (5%)
          Length = 1795

 Score = 25.0 bits (53), Expect = 8.3
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +2

Query: 4   VWWVVSLPVHNSASELWN 21
           +WW V++P  +S   LWN
Sbjct: 329 IWWGVAIPPSSSICCLWN 382


>TC206847 similar to GB|AAF76441.1|8569096|F2J10 ESTs gb|AI994059, gb|T43740
           come from this gene. {Arabidopsis thaliana;} , partial
           (46%)
          Length = 1571

 Score = 25.0 bits (53), Expect = 8.3
 Identities = 13/48 (27%), Positives = 24/48 (49%)
 Frame = +2

Query: 6   WVVSLPVHNSASELWNRLQQNVSKHSFDTPLYRFNIPISGSEP*TLSA 53
           W++  P  +   + W RLQ     ++ +   YRF +    ++P TL+A
Sbjct: 755 WLIIRPDGDGTWKPWGRLQAWREPNNSNAVGYRFEVLPGTADPVTLAA 898


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.327    0.135    0.452 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,919,968
Number of Sequences: 63676
Number of extensions: 31588
Number of successful extensions: 245
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 243
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 244
length of query: 56
length of database: 12,639,632
effective HSP length: 32
effective length of query: 24
effective length of database: 10,602,000
effective search space: 254448000
effective search space used: 254448000
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 52 (24.6 bits)