BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0199.8
(105 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC227524 weakly similar to UP|Q940T7 (Q940T7) At1g02270/T6A9_9, ... 102 2e-37
BU084633 similar to GP|15450673|gb| At1g02270/T6A9_9 {Arabidopsi... 47 2e-06
BE800591 29 0.41
BM178128 28 0.53
BM086688 28 0.69
BU764633 28 0.90
TC205318 similar to UP|Q8L7Z7 (Q8L7Z7) AT3g60070/T2O9_50, partia... 27 2.0
TC205317 similar to UP|Q8L7S2 (Q8L7S2) AT3g60070/T2O9_50, partia... 27 2.0
TC203407 weakly similar to UP|Q9ZT16 (Q9ZT16) Arabinogalactan-pr... 27 2.0
TC205808 26 3.4
TC209625 similar to GB|AAM70562.1|21700877|AY124853 At1g74910/F9... 25 5.8
TC213587 25 5.8
TC228641 similar to UP|IAAD_ARATH (Q38831) Auxin-responsive prot... 25 7.6
TC215295 similar to UP|Q94IB4 (Q94IB4) WRKY DNA-binding protein ... 25 7.6
BE802896 25 7.6
TC205316 similar to UP|Q8L7S2 (Q8L7S2) AT3g60070/T2O9_50, partia... 25 7.6
TC225430 similar to GB|AAD03446.1|4115936|T4B21 coded for by A. ... 25 7.6
TC208171 weakly similar to UP|SNAA_SOLTU (Q9M5P8) Alpha-soluble ... 24 10.0
TC233355 similar to UP|TRMB_ARATH (Q8GXB7) Probable tRNA (guanin... 24 10.0
TC212462 similar to UP|Q9ZVQ5 (Q9ZVQ5) Expressed protein (At2g02... 24 10.0
>TC227524 weakly similar to UP|Q940T7 (Q940T7) At1g02270/T6A9_9, partial
(46%)
Length = 1225
Score = 102 bits (254), Expect(2) = 2e-37
Identities = 47/62 (75%), Positives = 51/62 (81%)
Frame = +3
Query: 3 QILQYVESYQKENRFKSMSIVLCSDWNGSKLGHVYKFLRTQRFDSSYDTANKYIDSYADL 62
QILQYVE YQ+ENR K M I+LC DWNGSK GHVYKFLR+Q F SSYD AN+Y DSYAD
Sbjct: 6 QILQYVELYQRENRLKPMPIILCGDWNGSKRGHVYKFLRSQGFVSSYDIANRYSDSYADA 185
Query: 63 HK 64
HK
Sbjct: 186HK 191
Score = 68.6 bits (166), Expect(2) = 2e-37
Identities = 31/40 (77%), Positives = 34/40 (84%)
Frame = +1
Query: 66 VSHRNPRGNICGVDFICIFNPNQALKPLKTSWAEAVLTII 105
VSHRN RGNICG DFI + NPNQA KPLKTSWAEAV +I+
Sbjct: 310 VSHRNHRGNICGADFIWLCNPNQARKPLKTSWAEAVFSIL 429
>BU084633 similar to GP|15450673|gb| At1g02270/T6A9_9 {Arabidopsis thaliana},
partial (5%)
Length = 422
Score = 46.6 bits (109), Expect = 2e-06
Identities = 21/28 (75%), Positives = 24/28 (85%)
Frame = +1
Query: 78 VDFICIFNPNQALKPLKTSWAEAVLTII 105
VDFI + NPNQA KPLKTSWAEAV +I+
Sbjct: 1 VDFIWLCNPNQARKPLKTSWAEAVFSIL 84
>BE800591
Length = 410
Score = 28.9 bits (63), Expect = 0.41
Identities = 12/13 (92%), Positives = 13/13 (99%)
Frame = +1
Query: 2 YQILQYVESYQKE 14
Y+ILQYVESYQKE
Sbjct: 370 YKILQYVESYQKE 408
>BM178128
Length = 421
Score = 28.5 bits (62), Expect = 0.53
Identities = 12/28 (42%), Positives = 16/28 (56%)
Frame = -2
Query: 47 SSYDTANKYIDSYADLHK*VSHRNPRGN 74
S+ DT + YI Y DLH +H+N N
Sbjct: 309 SN*DTRSSYIQDYLDLHNLQNHQNSNNN 226
>BM086688
Length = 413
Score = 28.1 bits (61), Expect = 0.69
Identities = 12/28 (42%), Positives = 16/28 (56%)
Frame = -2
Query: 47 SSYDTANKYIDSYADLHK*VSHRNPRGN 74
S+ DT + YI Y DLH +H+N N
Sbjct: 187 SN*DTHSSYIQDYLDLHNLQNHQNSNNN 104
>BU764633
Length = 421
Score = 27.7 bits (60), Expect = 0.90
Identities = 18/65 (27%), Positives = 29/65 (43%)
Frame = -1
Query: 29 NGSKLGHVYKFLRTQRFDSSYDTANKYIDSYADLHK*VSHRNPRGNICGVDFICIFNPNQ 88
N K+ +V K + ++ +SS +NK + D + NPR N C F I+ N
Sbjct: 316 NKEKIMYVLKKKKNRKLESSLHLSNKNTINLMDSFLYLLGTNPRDNFC---FFYIYQENP 146
Query: 89 ALKPL 93
+ L
Sbjct: 145 VMATL 131
>TC205318 similar to UP|Q8L7Z7 (Q8L7Z7) AT3g60070/T2O9_50, partial (60%)
Length = 1155
Score = 26.6 bits (57), Expect = 2.0
Identities = 10/19 (52%), Positives = 12/19 (62%)
Frame = +2
Query: 17 FKSMSIVLCSDWNGSKLGH 35
F S S +LC+ W GS L H
Sbjct: 911 FGSCSCILCTSWGGSDLHH 967
>TC205317 similar to UP|Q8L7S2 (Q8L7S2) AT3g60070/T2O9_50, partial (19%)
Length = 639
Score = 26.6 bits (57), Expect = 2.0
Identities = 10/19 (52%), Positives = 12/19 (62%)
Frame = +2
Query: 17 FKSMSIVLCSDWNGSKLGH 35
F S S +LC+ W GS L H
Sbjct: 284 FGSCSCILCTSWGGSDLHH 340
>TC203407 weakly similar to UP|Q9ZT16 (Q9ZT16) Arabinogalactan-protein
(AtAGP4) (AT5g10430/F12B17_220), partial (50%)
Length = 966
Score = 26.6 bits (57), Expect = 2.0
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = +1
Query: 16 RFKSMSIVLCSDWN--GSKLGHVYKFLRTQRFDSSYDTA 52
R + + LC+ WN LG + F+RT FDSS+ A
Sbjct: 538 RQQGLHCYLCTRWNLRSHGLGGLRSFMRTIVFDSSHVVA 654
>TC205808
Length = 1016
Score = 25.8 bits (55), Expect = 3.4
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +3
Query: 18 KSMSIVLCSDWNGSKLGHV 36
K+MSI+L S WNGS + +
Sbjct: 141 KAMSILLTSPWNGSSVKRI 197
>TC209625 similar to GB|AAM70562.1|21700877|AY124853 At1g74910/F9E10_24
{Arabidopsis thaliana;} , partial (45%)
Length = 918
Score = 25.0 bits (53), Expect = 5.8
Identities = 11/16 (68%), Positives = 12/16 (74%)
Frame = -1
Query: 18 KSMSIVLCSDWNGSKL 33
KS IVL +DWN SKL
Sbjct: 69 KSTGIVLVADWNVSKL 22
>TC213587
Length = 855
Score = 25.0 bits (53), Expect = 5.8
Identities = 8/21 (38%), Positives = 12/21 (57%)
Frame = -2
Query: 22 IVLCSDWNGSKLGHVYKFLRT 42
++LC WN K H+ F +T
Sbjct: 446 VILCRPWNSQKYLHILGFQKT 384
>TC228641 similar to UP|IAAD_ARATH (Q38831) Auxin-responsive protein IAA13
(Indoleacetic acid-induced protein 13), partial (21%)
Length = 597
Score = 24.6 bits (52), Expect = 7.6
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +1
Query: 61 DLHK*VSHRNPRGNICGVDFICIFNPNQALKPLKTSWAE 99
DL+ +SH C ++ +C+FN L+PL +S E
Sbjct: 397 DLNDKISH------FCLINSVCLFNLVSLLRPLYSSHLE 495
>TC215295 similar to UP|Q94IB4 (Q94IB4) WRKY DNA-binding protein (Fragment),
partial (34%)
Length = 925
Score = 24.6 bits (52), Expect = 7.6
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = -2
Query: 53 NKYIDSYADLHK*VSHRNPRGNICGVDFICIFNPNQALKPLKT 95
N Y + L+K + P+ I G++ IC NP+ L T
Sbjct: 738 NIYYTNPVWLYKIYNKNKPKNAINGMNLICPINPSPPLPKFPT 610
>BE802896
Length = 416
Score = 24.6 bits (52), Expect = 7.6
Identities = 9/17 (52%), Positives = 12/17 (69%)
Frame = +1
Query: 81 ICIFNPNQALKPLKTSW 97
ICI++ +Q L P TSW
Sbjct: 295 ICIYH*SQTLPPFATSW 345
>TC205316 similar to UP|Q8L7S2 (Q8L7S2) AT3g60070/T2O9_50, partial (34%)
Length = 861
Score = 24.6 bits (52), Expect = 7.6
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +2
Query: 17 FKSMSIVLCSDWNGSKLGH 35
F S S +LCS W S L H
Sbjct: 443 FGSCSCILCSSWGCSNLHH 499
>TC225430 similar to GB|AAD03446.1|4115936|T4B21 coded for by A. thaliana
cDNA R89964 {Arabidopsis thaliana;} , complete
Length = 1178
Score = 24.6 bits (52), Expect = 7.6
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +1
Query: 25 CSDWNGSKLGHVYKFLRTQR 44
C DWN S GH F+R R
Sbjct: 466 CIDWNCSSWGHDTLFIRVVR 525
>TC208171 weakly similar to UP|SNAA_SOLTU (Q9M5P8) Alpha-soluble NSF
attachment protein (Alpha-SNAP)
(N-ethylmaleimide-sensitive factor attachment protein,
alpha), partial (41%)
Length = 553
Score = 24.3 bits (51), Expect = 10.0
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = +1
Query: 44 RFDSSYDTANKYIDS 58
+ DS YD AN Y+D+
Sbjct: 238 KLDSKYDAANAYVDA 282
>TC233355 similar to UP|TRMB_ARATH (Q8GXB7) Probable tRNA
(guanine-N(7)-)-methyltransferase
(tRNA(m7G46)-methyltransferase) , partial (89%)
Length = 1035
Score = 24.3 bits (51), Expect = 10.0
Identities = 11/26 (42%), Positives = 12/26 (45%)
Frame = -2
Query: 24 LCSDWNGSKLGHVYKFLRTQRFDSSY 49
L W L HVY F T+RF Y
Sbjct: 140 LADSWIYLSLRHVYLFKLTERFREKY 63
>TC212462 similar to UP|Q9ZVQ5 (Q9ZVQ5) Expressed protein
(At2g02370/T16F16.16), partial (66%)
Length = 712
Score = 24.3 bits (51), Expect = 10.0
Identities = 8/34 (23%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Frame = +2
Query: 5 LQYVESYQKENRFKSMSIVL-CSDWNGSKLGHVY 37
L Y++ + ++++ +++++ S WNG++ H+Y
Sbjct: 362 LYYIQLCRGSHKYEVLALLMWISSWNGTRSFHLY 463
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.327 0.139 0.440
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,877,141
Number of Sequences: 63676
Number of extensions: 57919
Number of successful extensions: 378
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 377
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 378
length of query: 105
length of database: 12,639,632
effective HSP length: 81
effective length of query: 24
effective length of database: 7,481,876
effective search space: 179565024
effective search space used: 179565024
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (24.3 bits)
Lotus: description of TM0199.8