BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0199.2
(160 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF424817 114 3e-26
TC235054 similar to UP|Q7KU11 (Q7KU11) CG15380-PB, partial (7%) 29 0.84
TC229573 homologue to UP|Q8VWN9 (Q8VWN9) Glyceraldehyde-3-phosph... 27 3.2
TC224664 glyceraldehyde-3 phosphate dehydrogenase 27 4.1
TC224565 homologue to UP|Q9XG67 (Q9XG67) Glyceraldehyde-3-phosph... 27 4.1
TC224783 homologue to UP|Q9XG67 (Q9XG67) Glyceraldehyde-3-phosph... 27 4.1
TC224585 homologue to UP|Q9XG67 (Q9XG67) Glyceraldehyde-3-phosph... 27 4.1
TC224574 homologue to UP|Q9XG67 (Q9XG67) Glyceraldehyde-3-phosph... 27 4.1
TC224648 homologue to UP|O49081 (O49081) Clp-like energy-depende... 26 7.1
TC220457 similar to UP|O24293 (O24293) Chloroplast inner envelop... 26 9.2
TC216540 26 9.2
>BF424817
Length = 413
Score = 114 bits (284), Expect = 3e-26
Identities = 52/102 (50%), Positives = 67/102 (64%)
Frame = +2
Query: 32 DKKPVHGSMSYFGVIELIWELDYTIFQVPVFGCRWVDNNNGVRIDDLGFTQVDLNRVGYK 91
D P S+ YFG I+ IWEL+Y F V VF C WVD+N GV DD+GF VDL ++GY
Sbjct: 5 DANPCVASIPYFGFIDEIWELNYVKFTVCVFKCEWVDSNTGVHTDDIGFMLVDLKKLGYH 184
Query: 92 NDPFILASQAEQVFFVTDPADKKWSMVQLSNKINDNKDYDEN 133
NDPFI+A QA QVF+V DP D++W +V I N + D++
Sbjct: 185 NDPFIMAEQARQVFYVQDPCDERWCVVLQGKTIGINVEDDDS 310
>TC235054 similar to UP|Q7KU11 (Q7KU11) CG15380-PB, partial (7%)
Length = 469
Score = 29.3 bits (64), Expect = 0.84
Identities = 13/50 (26%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = -2
Query: 23 QSMHISSAKDKKPVHGSMSYFGVIELI--WELDYTIFQVPVFGCRWVDNN 70
Q+ + + +K HG + G + ++ W+L T+ +V GC W+D +
Sbjct: 237 QNQKGAKKQKQKQTHGRAFHLGYVWMVKNWDLKQTLARVFHLGCVWMDQD 88
>TC229573 homologue to UP|Q8VWN9 (Q8VWN9) Glyceraldehyde-3-phosphate
dehydrogenase precursor , partial (41%)
Length = 780
Score = 27.3 bits (59), Expect = 3.2
Identities = 12/45 (26%), Positives = 24/45 (52%)
Frame = +3
Query: 116 SMVQLSNKINDNKDYDENQQKSVDKEDDPFKGISHSLDDDLIEDD 160
S+V L+ ++ N Y++ + + P KGI D+D++ +D
Sbjct: 225 SVVDLTCRLKKNASYEDVKAAIKYASEGPLKGILGYTDEDVVSND 359
>TC224664 glyceraldehyde-3 phosphate dehydrogenase
Length = 1605
Score = 26.9 bits (58), Expect = 4.1
Identities = 12/45 (26%), Positives = 23/45 (50%)
Frame = +3
Query: 116 SMVQLSNKINDNKDYDENQQKSVDKEDDPFKGISHSLDDDLIEDD 160
S+V L+ ++ YDE + ++ + KGI +DD++ D
Sbjct: 963 SVVDLTVRLEKEASYDEIKNAIKEESEGKLKGILGYTEDDVVSTD 1097
>TC224565 homologue to UP|Q9XG67 (Q9XG67) Glyceraldehyde-3-phosphate
dehydrogenase , partial (44%)
Length = 786
Score = 26.9 bits (58), Expect = 4.1
Identities = 12/45 (26%), Positives = 23/45 (50%)
Frame = +1
Query: 116 SMVQLSNKINDNKDYDENQQKSVDKEDDPFKGISHSLDDDLIEDD 160
S+V L+ ++ YDE + ++ + KGI +DD++ D
Sbjct: 184 SVVDLTVRLEKEASYDEIKNAIKEESEGKLKGILGYTEDDVVSTD 318
>TC224783 homologue to UP|Q9XG67 (Q9XG67) Glyceraldehyde-3-phosphate
dehydrogenase , partial (98%)
Length = 1702
Score = 26.9 bits (58), Expect = 4.1
Identities = 12/45 (26%), Positives = 23/45 (50%)
Frame = +1
Query: 116 SMVQLSNKINDNKDYDENQQKSVDKEDDPFKGISHSLDDDLIEDD 160
S+V L+ ++ YDE + ++ + KGI +DD++ D
Sbjct: 1030 SVVDLTVRLEKEASYDEIKNAIKEESEGKLKGILGYTEDDVVSTD 1164
>TC224585 homologue to UP|Q9XG67 (Q9XG67) Glyceraldehyde-3-phosphate
dehydrogenase , partial (46%)
Length = 873
Score = 26.9 bits (58), Expect = 4.1
Identities = 12/45 (26%), Positives = 23/45 (50%)
Frame = +2
Query: 116 SMVQLSNKINDNKDYDENQQKSVDKEDDPFKGISHSLDDDLIEDD 160
S+V L+ ++ YDE + ++ + KGI +DD++ D
Sbjct: 203 SVVDLTVRLEKEASYDEIKNAIKEESEGKLKGILGYTEDDVVSTD 337
>TC224574 homologue to UP|Q9XG67 (Q9XG67) Glyceraldehyde-3-phosphate
dehydrogenase , partial (51%)
Length = 932
Score = 26.9 bits (58), Expect = 4.1
Identities = 12/45 (26%), Positives = 23/45 (50%)
Frame = +1
Query: 116 SMVQLSNKINDNKDYDENQQKSVDKEDDPFKGISHSLDDDLIEDD 160
S+V L+ ++ YDE + ++ + KGI +DD++ D
Sbjct: 256 SVVDLTVRLEKEASYDEIKNAIKEESEGKLKGILGYTEDDVVSTD 390
>TC224648 homologue to UP|O49081 (O49081) Clp-like energy-dependent protease,
partial (34%)
Length = 678
Score = 26.2 bits (56), Expect = 7.1
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +2
Query: 15 NSGVTLIAQSMHISSAKDKKPVHGSMSYFGVIE 47
+SGV L ++S D+K +HG+ + +G IE
Sbjct: 155 SSGVGLSSKSRGFPLKLDEKNIHGASTSYGAIE 253
>TC220457 similar to UP|O24293 (O24293) Chloroplast inner envelope protein,
110 kD (IEP110) precursor, partial (32%)
Length = 1034
Score = 25.8 bits (55), Expect = 9.2
Identities = 17/54 (31%), Positives = 23/54 (42%)
Frame = +1
Query: 107 VTDPADKKWSMVQLSNKINDNKDYDENQQKSVDKEDDPFKGISHSLDDDLIEDD 160
+T D++W +Q KI NK+ E K E +L DDL E D
Sbjct: 703 ITQTDDEEWESLQTLKKIRPNKELTEKLGKPGQTE--------ITLKDDLPERD 840
>TC216540
Length = 713
Score = 25.8 bits (55), Expect = 9.2
Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 8/66 (12%)
Frame = +3
Query: 7 QDDRTTMQNSGVTLIAQSMHISSAKDKKPVHGSMSYFG--------VIELIWELDYTIFQ 58
+++ T+M N LI+ S ++S+ + PVH ++SYF ++ L+ EL+ +
Sbjct: 126 RNNLTSMPNGTPALISPS--VASSTPQPPVHLAVSYFSGVL*LDGHLLLLVLELELDLHM 299
Query: 59 VPVFGC 64
V C
Sbjct: 300 QNVLVC 317
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.316 0.135 0.400
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,423,609
Number of Sequences: 63676
Number of extensions: 78967
Number of successful extensions: 398
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 392
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 397
length of query: 160
length of database: 12,639,632
effective HSP length: 90
effective length of query: 70
effective length of database: 6,908,792
effective search space: 483615440
effective search space used: 483615440
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)
Lotus: description of TM0199.2