TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0197.8
         (242 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BU081086 weakly similar to GP|27817864|db OJ1081_B12.13 {Oryza s...    67  9e-12
TC226403 similar to UP|Q9FPW6 (Q9FPW6) POZ/BTB containing-protei...    29  2.2
TC214664 weakly similar to GB|AAL31248.1|16974489|AY061921 At2g2...    27  6.4
TC224772 homologue to UP|O65760 (O65760) Extensin (Fragment), pa...    27  8.3
TC226402 similar to UP|Q9FPW6 (Q9FPW6) POZ/BTB containing-protei...    27  8.3

>BU081086 weakly similar to GP|27817864|db OJ1081_B12.13 {Oryza sativa
           (japonica cultivar-group)}, partial (7%)
          Length = 426

 Score = 66.6 bits (161), Expect = 9e-12
 Identities = 34/78 (43%), Positives = 48/78 (60%)
 Frame = +2

Query: 56  TT*FLNNTKS*GMSNHKLLLKVDIPIMLLRNIDQAAGLCNGTRLIVVELGERYIGATVIT 115
           TT F+N+  +  + NHK+ LKVD  IMLLRN+DQ  GLCN TRLI+    +  I A +++
Sbjct: 56  TTEFINSLSTSRLPNHKIKLKVDSRIMLLRNLDQNEGLCNSTRLIITMFADHIIEAKIMS 235

Query: 116 GTNANDKVHISIMDLVPS 133
           G    + V+I  +   PS
Sbjct: 236 GKGQGNTVYIPRLATSPS 289


>TC226403 similar to UP|Q9FPW6 (Q9FPW6) POZ/BTB containing-protein AtPOB1,
           partial (20%)
          Length = 548

 Score = 28.9 bits (63), Expect = 2.2
 Identities = 15/39 (38%), Positives = 22/39 (55%)
 Frame = +2

Query: 72  KLLLKVDIPIMLLRNIDQAAGLCNGTRLIVVELGERYIG 110
           + LL + + + LLR  DQ   L   T+ I+  LGER +G
Sbjct: 119 RALLALPLTMNLLRGQDQQRNLLASTKAIMYSLGERPLG 235


>TC214664 weakly similar to GB|AAL31248.1|16974489|AY061921 At2g27080/T20P8.13
            {Arabidopsis thaliana;} , partial (56%)
          Length = 1097

 Score = 27.3 bits (59), Expect = 6.4
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = -1

Query: 186  LEYAQERVLNFEYWNSQANNRPVL*M*CLRKFL 218
            + YAQ ++ + + W  + N    +* *C+RKF+
Sbjct: 1070 MTYAQNQIKS*DTWRXRINKCATM*H*CIRKFV 972


>TC224772 homologue to UP|O65760 (O65760) Extensin (Fragment), partial (12%)
          Length = 1452

 Score = 26.9 bits (58), Expect = 8.3
 Identities = 16/69 (23%), Positives = 29/69 (41%)
 Frame = +2

Query: 174 PSSLMVSYM*LSLEYAQERVLNFEYWNSQANNRPVL*M*CLRKFLEMFDVYNTISFIYFI 233
           P+  M   +   ++   ++  NF +W     N  +L + C+  F           F++F 
Sbjct: 773 PTFAMAGALAWQVKNINKKSNNFWFWGRSHGNSGLLPLVCVMFFF----------FLFFF 922

Query: 234 FLLIYYYTI 242
           FLL Y Y +
Sbjct: 923 FLLYYLYML 949


>TC226402 similar to UP|Q9FPW6 (Q9FPW6) POZ/BTB containing-protein AtPOB1,
            partial (77%)
          Length = 1565

 Score = 26.9 bits (58), Expect = 8.3
 Identities = 14/36 (38%), Positives = 20/36 (54%)
 Frame = +3

Query: 72   KLLLKVDIPIMLLRNIDQAAGLCNGTRLIVVELGER 107
            + LL + + + LLR  DQ   L   T+ I+  LGER
Sbjct: 1152 RALLALPLTMNLLRGQDQQRNLLASTKAIMYSLGER 1259


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.341    0.150    0.478 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,591,406
Number of Sequences: 63676
Number of extensions: 113579
Number of successful extensions: 1115
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1114
length of query: 242
length of database: 12,639,632
effective HSP length: 95
effective length of query: 147
effective length of database: 6,590,412
effective search space: 968790564
effective search space used: 968790564
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.9 bits)
S2: 57 (26.6 bits)