TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0197.5
         (317 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

AW279280 similar to PIR|T04047|T0 isoleucine-tRNA ligase homolog...    28  5.5

>AW279280 similar to PIR|T04047|T0 isoleucine-tRNA ligase homolog F24G24.120
           - Arabidopsis thaliana, partial (11%)
          Length = 493

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 15/47 (31%), Positives = 27/47 (56%)
 Frame = -1

Query: 30  IKVLLEFEIGEDMRFMLAELTIEAMIDGWLFIVLLEMEGLVVFSNGV 76
           + VL++ E+ + +  + AEL ++ ++DG    V  E  G VV  +GV
Sbjct: 328 VVVLVDSELEDVIAILDAELLVDLVLDGEAVAVAAESAGDVVAGHGV 188


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.316    0.131    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,405,210
Number of Sequences: 63676
Number of extensions: 127726
Number of successful extensions: 680
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 677
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 680
length of query: 317
length of database: 12,639,632
effective HSP length: 97
effective length of query: 220
effective length of database: 6,463,060
effective search space: 1421873200
effective search space used: 1421873200
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)