BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0195a.7
(69 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC231284 homologue to UP|Q705X3 (Q705X3) Rho GDP dissociation in... 125 4e-30
TC211794 weakly similar to UP|Q7Y0Q8 (Q7Y0Q8) Rac GDP-dissociati... 94 1e-20
TC217849 weakly similar to UP|Q7Y0Q8 (Q7Y0Q8) Rac GDP-dissociati... 92 7e-20
TC218849 similar to UP|Q705X4 (Q705X4) Rho GDP dissociation inhi... 80 2e-16
TC218850 similar to UP|Q705X4 (Q705X4) Rho GDP dissociation inhi... 78 8e-16
TC210418 similar to UP|Q9FMX6 (Q9FMX6) Gb|AAD21732.1, partial (36%) 26 3.4
AW568478 weakly similar to GP|5031279|gb| porin {Prunus armeniac... 26 4.5
TC204556 homologue to UP|Q6W2J5 (Q6W2J5) VDAC1.1, complete 25 7.6
TC210053 similar to UP|Q9FLD7 (Q9FLD7) Glycosylation enzyme-like... 25 7.6
BM308786 25 10.0
>TC231284 homologue to UP|Q705X3 (Q705X3) Rho GDP dissociation inhibitor 2,
partial (55%)
Length = 611
Score = 125 bits (314), Expect = 4e-30
Identities = 56/66 (84%), Positives = 62/66 (93%)
Frame = +3
Query: 4 VTVDSSKEMIGTFSPQTDPYTHEMPDETTPSGIFARRAYSARSKFVDDDNKCYLEIDYTF 63
+ VDSSKEMIGTFSPQ +PYTHEMP+ETTPSG+FAR YSARSKFVDDDNKCYLEI+YTF
Sbjct: 183 IKVDSSKEMIGTFSPQAEPYTHEMPEETTPSGMFARGQYSARSKFVDDDNKCYLEINYTF 362
Query: 64 DIRKDW 69
DIRK+W
Sbjct: 363 DIRKEW 380
>TC211794 weakly similar to UP|Q7Y0Q8 (Q7Y0Q8) Rac GDP-dissociation inhibitor
1, partial (62%)
Length = 695
Score = 94.0 bits (232), Expect = 1e-20
Identities = 39/64 (60%), Positives = 54/64 (83%)
Frame = +2
Query: 6 VDSSKEMIGTFSPQTDPYTHEMPDETTPSGIFARRAYSARSKFVDDDNKCYLEIDYTFDI 65
VD++K+M+GT+SP + YT+E+ +ETTPSG+FAR YSAR+KFVDDD KCYL+ Y F+I
Sbjct: 296 VDNTKKMLGTYSPSQELYTYELEEETTPSGLFARGTYSARTKFVDDDRKCYLDTSYHFEI 475
Query: 66 RKDW 69
+K+W
Sbjct: 476 QKNW 487
>TC217849 weakly similar to UP|Q7Y0Q8 (Q7Y0Q8) Rac GDP-dissociation inhibitor
1, partial (66%)
Length = 1067
Score = 91.7 bits (226), Expect = 7e-20
Identities = 39/65 (60%), Positives = 53/65 (81%)
Frame = +1
Query: 4 VTVDSSKEMIGTFSPQTDPYTHEMPDETTPSGIFARRAYSARSKFVDDDNKCYLEIDYTF 63
V VDS K+M+GTFSP+ +PYT E+ +ET PSG+F R Y+AR+KFVDDD KCYL++ Y F
Sbjct: 751 VRVDSRKKMLGTFSPKQEPYTFELEEETIPSGMFVRGTYAARTKFVDDDRKCYLDVSYYF 930
Query: 64 DIRKD 68
+I+K+
Sbjct: 931 EIQKN 945
>TC218849 similar to UP|Q705X4 (Q705X4) Rho GDP dissociation inhibitor 1,
partial (79%)
Length = 826
Score = 80.1 bits (196), Expect = 2e-16
Identities = 32/62 (51%), Positives = 47/62 (75%)
Frame = +3
Query: 6 VDSSKEMIGTFSPQTDPYTHEMPDETTPSGIFARRAYSARSKFVDDDNKCYLEIDYTFDI 65
VD SK M+GTF+PQ +PY H + ++ TPSG+ AR YSA+ KF DDD +C++E+ Y+ +I
Sbjct: 612 VDQSKGMLGTFAPQKEPYVHTLKEDITPSGVLARGVYSAKIKFEDDDRRCHMELKYSLEI 791
Query: 66 RK 67
+K
Sbjct: 792 KK 797
>TC218850 similar to UP|Q705X4 (Q705X4) Rho GDP dissociation inhibitor 1,
partial (79%)
Length = 807
Score = 78.2 bits (191), Expect = 8e-16
Identities = 32/62 (51%), Positives = 46/62 (73%)
Frame = +2
Query: 6 VDSSKEMIGTFSPQTDPYTHEMPDETTPSGIFARRAYSARSKFVDDDNKCYLEIDYTFDI 65
VD SK M+G F+PQ +PY + + ++TTPSG AR YSA+ KF DDD +C++E+ Y F+I
Sbjct: 482 VDQSKGMLGAFAPQKEPYVYALKEDTTPSGALARGVYSAKLKFEDDDRRCHMELKYLFEI 661
Query: 66 RK 67
+K
Sbjct: 662 KK 667
>TC210418 similar to UP|Q9FMX6 (Q9FMX6) Gb|AAD21732.1, partial (36%)
Length = 598
Score = 26.2 bits (56), Expect = 3.4
Identities = 9/22 (40%), Positives = 16/22 (71%)
Frame = -3
Query: 39 RRAYSARSKFVDDDNKCYLEID 60
RR+Y ++S VDDDN ++ ++
Sbjct: 134 RRSYKSKSIMVDDDNALHVRVE 69
>AW568478 weakly similar to GP|5031279|gb| porin {Prunus armeniaca}, partial
(63%)
Length = 526
Score = 25.8 bits (55), Expect = 4.5
Identities = 9/33 (27%), Positives = 19/33 (57%)
Frame = -1
Query: 36 IFARRAYSARSKFVDDDNKCYLEIDYTFDIRKD 68
I A+ +R +F+ ++ ++ + FDIR+D
Sbjct: 286 IIAKYCIESRGRFIHSNDCTHMRVSVQFDIRRD 188
>TC204556 homologue to UP|Q6W2J5 (Q6W2J5) VDAC1.1, complete
Length = 1312
Score = 25.0 bits (53), Expect = 7.6
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -1
Query: 38 ARRAYSARSKFVDDDNKCYLEIDYTFDIRKD 68
A+ + RS+F+D D+ + I FDI D
Sbjct: 406 AKNSLQTRSRFIDSDSCEEIRICINFDISSD 314
>TC210053 similar to UP|Q9FLD7 (Q9FLD7) Glycosylation enzyme-like protein
(At5g39990), partial (45%)
Length = 729
Score = 25.0 bits (53), Expect = 7.6
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +2
Query: 2 HFVTVDSSKEMIGTFSPQTDPYTHEMP 28
H++TVD K M+G+ +P + E P
Sbjct: 308 HYLTVDDMKGMVGSNAPFARKFHREDP 388
>BM308786
Length = 368
Score = 24.6 bits (52), Expect = 10.0
Identities = 11/27 (40%), Positives = 15/27 (54%), Gaps = 1/27 (3%)
Frame = +3
Query: 17 SPQTDPYTHEMPDETTPSG-IFARRAY 42
S DP H+M + T P G F+RR +
Sbjct: 117 SENVDPRRHDMGEATAPKGEFFSRRRF 197
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.318 0.135 0.420
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,497,821
Number of Sequences: 63676
Number of extensions: 22333
Number of successful extensions: 112
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of query: 69
length of database: 12,639,632
effective HSP length: 45
effective length of query: 24
effective length of database: 9,774,212
effective search space: 234581088
effective search space used: 234581088
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)
Lotus: description of TM0195a.7