BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0195a.3
(660 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC231550 similar to UP|Q84W08 (Q84W08) At2g18100, partial (25%) 252 4e-67
TC211023 similar to UP|Q84W08 (Q84W08) At2g18100, partial (23%) 237 1e-62
BG882384 123 2e-28
AW832402 homologue to GP|28416557|gb| At2g18100 {Arabidopsis tha... 52 6e-07
TC227933 51 1e-06
CO979245 41 0.001
TC209875 39 0.007
TC203287 weakly similar to UP|Q41645 (Q41645) Extensin (Fragment... 34 0.18
TC203386 similar to UP|Q9XIV1 (Q9XIV1) Cucumis sativus mRNA expr... 34 0.24
TC216000 similar to UP|O22253 (O22253) Photolyase/blue-light rec... 33 0.31
TC203681 similar to UP|Q9XIV1 (Q9XIV1) Cucumis sativus mRNA expr... 33 0.41
TC233071 similar to UP|Q8GZF0 (Q8GZF0) Resistance protein KR4, p... 31 1.5
TC215091 UP|CUT2_CAEEL (P34682) Cuticlin 2 precursor, partial (10%) 31 2.0
TC216940 weakly similar to GB|AAP37755.1|30725466|BT008396 At1g6... 31 2.0
BG790175 similar to PIR|T09854|T098 proline-rich cell wall prote... 30 3.4
TC233971 UP|O35318 (O35318) DLP1 splice variant 1 (Fragment), pa... 30 3.4
TC215353 similar to UP|Q9FYW7 (Q9FYW7) BAC19.9, partial (29%) 30 3.4
NP205681 receptor protein kinase-like protein 30 4.5
TC232838 similar to GB|AAP21377.1|30102918|BT006569 At1g47970 {A... 30 4.5
BM094733 30 4.5
>TC231550 similar to UP|Q84W08 (Q84W08) At2g18100, partial (25%)
Length = 503
Score = 252 bits (643), Expect = 4e-67
Identities = 127/167 (76%), Positives = 145/167 (86%)
Frame = +3
Query: 454 ELMKGGAMMTVLSTLVAALAWPATLVTTFDLIDSKWAVAIDRSDKAGKVLAEVLLKGLQG 513
ELMK GAMMTVL L+ ALAWPA L+ + IDS W +AIDRSDKAGK+LAEVLL GLQG
Sbjct: 6 ELMKQGAMMTVLHALLTALAWPAALLAATEFIDSTWTIAIDRSDKAGKLLAEVLLGGLQG 185
Query: 514 NRPVTLVGFSLGARVIFKCLQFLADSDGDNAGLVEKVVFLGAPISINDENWKAARKMVAG 573
NRPVTLVG+SLGARVIFKCL+FLA+++ ++A LVE+VV LGAPI+I DENW+AARKMVAG
Sbjct: 186 NRPVTLVGYSLGARVIFKCLEFLAETE-NSAELVERVVLLGAPIAIKDENWEAARKMVAG 362
Query: 574 RFVNAYSTNDWTLGITFRASLLSQGLAGIQPVDVPGIENVDVTQLIE 620
RFVNAYS NDW LG+ FRASLLSQGLAGIQPVD+P I+NVDVT IE
Sbjct: 363 RFVNAYSRNDWMLGVAFRASLLSQGLAGIQPVDIPXIQNVDVTDHIE 503
>TC211023 similar to UP|Q84W08 (Q84W08) At2g18100, partial (23%)
Length = 783
Score = 237 bits (605), Expect = 1e-62
Identities = 117/155 (75%), Positives = 137/155 (87%)
Frame = +1
Query: 491 VAIDRSDKAGKVLAEVLLKGLQGNRPVTLVGFSLGARVIFKCLQFLADSDGDNAGLVEKV 550
+ I RS+KAGK+LAEVLLKGLQGNRPVTL+G+SLGARVIFKCLQ+LA ++ + A LVEKV
Sbjct: 148 ILIFRSNKAGKLLAEVLLKGLQGNRPVTLIGYSLGARVIFKCLQYLAKTE-NGAELVEKV 324
Query: 551 VFLGAPISINDENWKAARKMVAGRFVNAYSTNDWTLGITFRASLLSQGLAGIQPVDVPGI 610
V LGAPI I DENW+A RKMVAGRFVNAYS DW LG+ FRASLL++GLAGIQPVD+PGI
Sbjct: 325 VLLGAPIPIMDENWEATRKMVAGRFVNAYSRTDWMLGVAFRASLLTKGLAGIQPVDIPGI 504
Query: 611 ENVDVTQLIEGHSSYLWKTQKILEQLELDNYFAVF 645
+NVDVT+ IEGHSSYLW TQKIL+QL+LD Y+ V+
Sbjct: 505 QNVDVTEHIEGHSSYLWATQKILDQLQLDTYYPVY 609
>BG882384
Length = 374
Score = 123 bits (309), Expect = 2e-28
Identities = 56/75 (74%), Positives = 66/75 (87%)
Frame = -1
Query: 573 GRFVNAYSTNDWTLGITFRASLLSQGLAGIQPVDVPGIENVDVTQLIEGHSSYLWKTQKI 632
GRFVNAYS NDW LG+ FRASLL++GLAGIQPVD+PGI+NV+VT IEGHSSYLW TQKI
Sbjct: 374 GRFVNAYSRNDWMLGVAFRASLLTKGLAGIQPVDIPGIQNVEVTDHIEGHSSYLWATQKI 195
Query: 633 LEQLELDNYFAVFRS 647
L+QL+LD Y+ V+ S
Sbjct: 194 LDQLQLDTYYPVYNS 150
>AW832402 homologue to GP|28416557|gb| At2g18100 {Arabidopsis thaliana},
partial (1%)
Length = 384
Score = 52.4 bits (124), Expect = 6e-07
Identities = 32/89 (35%), Positives = 40/89 (43%), Gaps = 38/89 (42%)
Frame = +3
Query: 597 QGLAGIQPVDVPGIENVDV--------------------------------------TQL 618
+GLAGIQPVD+PGI+NV
Sbjct: 6 KGLAGIQPVDIPGIQNVRCFFILFANV*HYFSKSQSYFQ*YHS*IMNINV**NGCLFLHC 185
Query: 619 IEGHSSYLWKTQKILEQLELDNYFAVFRS 647
IEGHSS W TQKIL+QL+LD Y+ V+ +
Sbjct: 186 IEGHSSNPWATQKILDQLQLDTYYPVYNN 272
>TC227933
Length = 1103
Score = 51.2 bits (121), Expect = 1e-06
Identities = 30/58 (51%), Positives = 39/58 (66%), Gaps = 1/58 (1%)
Frame = +3
Query: 591 RASLLSQGLAGIQPVDVPGIE-NVDVTQLIEGHSSYLWKTQKILEQLELDNYFAVFRS 647
+ SLLS G AGIQ ++PGI VD+T +EGH SYL T IL++L LD Y+ V+ S
Sbjct: 513 KLSLLSLG*AGIQLFNIPGIHLIVDMTDYVEGHFSYL*ATH-ILDKLNLDRYYPVYNS 683
>CO979245
Length = 730
Score = 41.2 bits (95), Expect = 0.001
Identities = 31/74 (41%), Positives = 34/74 (45%)
Frame = -1
Query: 294 GGIIGAAAVTGGTLMAITGGLAAPAIAHGLGALAPTFGSIVPFIGAGGFAAAATATGSVA 353
GG G A+ G GG AAP G GA AP G GGF AAAT G A
Sbjct: 361 GGFSGIASGGG------FGGGAAPGGGFG-GAAAPGSGFGAAAAPGGGFGAAATPGGGFA 203
Query: 354 GSVAVAASFGAAGA 367
G+ A FGAA +
Sbjct: 202 GAAAPGVGFGAASS 161
Score = 37.7 bits (86), Expect = 0.016
Identities = 28/86 (32%), Positives = 40/86 (45%)
Frame = -1
Query: 294 GGIIGAAAVTGGTLMAITGGLAAPAIAHGLGALAPTFGSIVPFIGAGGFAAAATATGSVA 353
GG G+++ +G + AI GG A G+ + FGS+ G+GGF+ A+ G
Sbjct: 478 GGFAGSSSPSGFSNTAIGGGFA------GIASTGRGFGSVAS-TGSGGFSGIASG-GGFG 323
Query: 354 GSVAVAASFGAAGAGLTGSKMATRIG 379
G A FG A A +G A G
Sbjct: 322 GGAAPGGGFGGAAAPGSGFGAAAAPG 245
Score = 36.6 bits (83), Expect = 0.037
Identities = 32/80 (40%), Positives = 37/80 (46%)
Frame = -1
Query: 294 GGIIGAAAVTGGTLMAITGGLAAPAIAHGLGALAPTFGSIVPFIGAGGFAAAATATGSVA 353
GG GAAA GG G AAP + G GA + T GGFA A + G A
Sbjct: 247 GGGFGAAATPGGGF----AGAAAPGV--GFGAASST----------GGFAGAGSGGGFGA 116
Query: 354 GSVAVAASFGAAGAGLTGSK 373
S + FGA G+G GSK
Sbjct: 115 FSSQGSGGFGAFGSG-GGSK 59
>TC209875
Length = 524
Score = 38.9 bits (89), Expect = 0.007
Identities = 16/21 (76%), Positives = 21/21 (99%)
Frame = +3
Query: 593 SLLSQGLAGIQPVDVPGIENV 613
+LL++GLAGIQPVD+PGI+NV
Sbjct: 135 ALLTKGLAGIQPVDIPGIQNV 197
>TC203287 weakly similar to UP|Q41645 (Q41645) Extensin (Fragment), partial
(14%)
Length = 967
Score = 34.3 bits (77), Expect = 0.18
Identities = 33/123 (26%), Positives = 49/123 (39%)
Frame = -1
Query: 258 AMESMVAFSLMNSLSEAGAKEDESIGSENNWDKWKRGGIIGAAAVTGGTLMAITGGLAAP 317
++ES A ++ + E+ +++ +EN AA GG G A P
Sbjct: 526 SLESF*AKTMATKIPESAEPAMKALLAEN------------AAEGGGGGSAPPAGPGAGP 383
Query: 318 AIAHGLGALAPTFGSIVPFIGAGGFAAAATATGSVAGSVAVAASFGAAGAGLTGSKMATR 377
A+ G LA G + AG AA G VAG AAG G+ G +A
Sbjct: 382 AVPGAGGELAEGTGEVAGE-EAGVGAAVGVGVGVVAGGDVAGGGVAAAGGGVAGGGVAGG 206
Query: 378 IGS 380
+G+
Sbjct: 205 VGA 197
Score = 30.0 bits (66), Expect = 3.4
Identities = 18/63 (28%), Positives = 27/63 (42%)
Frame = -1
Query: 295 GIIGAAAVTGGTLMAITGGLAAPAIAHGLGALAPTFGSIVPFIGAGGFAAAATATGSVAG 354
G++ V GG + A GG+A +A G+GA G+ G G G+ G
Sbjct: 289 GVVAGGDVAGGGVAAAGGGVAGGGVAGGVGA-----GAGADLGGGGDGVVVGGCVGAAPG 125
Query: 355 SVA 357
+ A
Sbjct: 124 ACA 116
>TC203386 similar to UP|Q9XIV1 (Q9XIV1) Cucumis sativus mRNA expressed in
cucumber hypocotyls, complete cds (Arabinogalactan
protein), partial (40%)
Length = 649
Score = 33.9 bits (76), Expect = 0.24
Identities = 29/75 (38%), Positives = 34/75 (44%), Gaps = 1/75 (1%)
Frame = -3
Query: 295 GIIGAAAVTGGTLMAITGGLAAPAIAHGLGALAPTFGSIVPFIGAGGFAAAATATGS-VA 353
G++GA+A GG L G A G GA G + AGG AA ATG VA
Sbjct: 431 GVVGASA--GGELT----GTGAGGELTGTGAGGELTGVTAGGVAAGGVAAGGVATGGVVA 270
Query: 354 GSVAVAASFGAAGAG 368
G+ A A G A G
Sbjct: 269 GAGAAALDGGDATVG 225
>TC216000 similar to UP|O22253 (O22253) Photolyase/blue-light receptor
(Photolyase/blue light photoreceptor PHR2), partial
(84%)
Length = 1641
Score = 33.5 bits (75), Expect = 0.31
Identities = 27/87 (31%), Positives = 35/87 (40%), Gaps = 7/87 (8%)
Frame = -3
Query: 292 KRGGIIGAAAVTGGTLMAITGGLAA-------PAIAHGLGALAPTFGSIVPFIGAGGFAA 344
+ GG +GA V G +A+ GG+ A + G AL +V GG AA
Sbjct: 430 EEGGAVGAGLVEAGCRLAVVGGVEAVDGEDGEGVVVGGGEALIVEEAEVVAEPDDGG-AA 254
Query: 345 AATATGSVAGSVAVAASFGAAGAGLTG 371
G VAG+V G G G G
Sbjct: 253 EGGGVGRVAGAVGSEGERGVEGVGGDG 173
>TC203681 similar to UP|Q9XIV1 (Q9XIV1) Cucumis sativus mRNA expressed in
cucumber hypocotyls, complete cds (Arabinogalactan
protein), partial (40%)
Length = 913
Score = 33.1 bits (74), Expect = 0.41
Identities = 26/78 (33%), Positives = 31/78 (39%)
Frame = -1
Query: 295 GIIGAAAVTGGTLMAITGGLAAPAIAHGLGALAPTFGSIVPFIGAGGFAAAATATGSVAG 354
G+ GG GG+AA +A G GA A G AGG A AA G
Sbjct: 367 GVTAGGVAAGGVA---AGGVAAGGVATGAGAAALDGGDATVGDEAGGVAVAALG-DEAGG 200
Query: 355 SVAVAASFGAAGAGLTGS 372
V + GA GL G+
Sbjct: 199 DDDVGEATGAGDFGLEGA 146
>TC233071 similar to UP|Q8GZF0 (Q8GZF0) Resistance protein KR4, partial (18%)
Length = 658
Score = 31.2 bits (69), Expect = 1.5
Identities = 29/115 (25%), Positives = 52/115 (45%)
Frame = +2
Query: 185 LENVTLEKPLEEASLISYQRKVTVLYALVSACVADTAEVDNKCCRSRQGYDARHRVSLRL 244
+EN+ K LE+ S+ Y K + L +++ ++ C+S Q H SL L
Sbjct: 311 IENLQPSKNLEKLSIRKYGGKQFPNW-LSDNSLSNVVSLELDNCQSCQ-----HLPSLGL 472
Query: 245 IATWLGVKWNEMEAMESMVAFSLMNSLSEAGAKEDESIGSENNWDKWKRGGIIGA 299
+ ++ + ++ + S+ A NS S + E S W+KW+ +IGA
Sbjct: 473 LPFLKNLEISSLDGIVSIGADFHGNSSSSFPSLETLKFSSMKAWEKWECEAVIGA 637
>TC215091 UP|CUT2_CAEEL (P34682) Cuticlin 2 precursor, partial (10%)
Length = 913
Score = 30.8 bits (68), Expect = 2.0
Identities = 28/97 (28%), Positives = 38/97 (38%)
Frame = -3
Query: 295 GIIGAAAVTGGTLMAITGGLAAPAIAHGLGALAPTFGSIVPFIGAGGFAAAATATGSVAG 354
G +G A G +TG + A+ LG P FG IGA G A G G
Sbjct: 626 GALGGPAFGGPE--GVTGDSGSEAVTGALGG--PAFGGPEVVIGALGGPAFGGPKGVTGG 459
Query: 355 SVAVAASFGAAGAGLTGSKMATRIGSLEEFELKEIGG 391
S + A G+ +TG+ G E + +GG
Sbjct: 458 SGSEAVIGGSGSEAVTGALGGPAFGG-PEVVISALGG 351
>TC216940 weakly similar to GB|AAP37755.1|30725466|BT008396 At1g68580
{Arabidopsis thaliana;} , partial (11%)
Length = 1049
Score = 30.8 bits (68), Expect = 2.0
Identities = 30/120 (25%), Positives = 44/120 (36%), Gaps = 9/120 (7%)
Frame = +2
Query: 469 VAALAWPATLVTTFDLIDSKWAVAIDRSDKAGKVLAEVLLK---------GLQGNRPVTL 519
V ++ P L + D + ++W +R D VL+ + K +Q +T
Sbjct: 104 VVSVFGPGNLRESQDWVGNEWVFVRERPDLVASVLSSLKTKQNSCKSNSNNIQSTGAITR 283
Query: 520 VGFSLGARVIFKCLQFLADSDGDNAGLVEKVVFLGAPISINDENWKAARKMVAGRFVNAY 579
G G CL DSD D E V L + + WK RK GR +Y
Sbjct: 284 DGIQFGQSDT--CL----DSDKDRPRKAEVVPDLLKNVLSSQLRWKTTRKRKRGRSSASY 445
>BG790175 similar to PIR|T09854|T098 proline-rich cell wall protein - upland
cotton, partial (21%)
Length = 415
Score = 30.0 bits (66), Expect = 3.4
Identities = 22/66 (33%), Positives = 27/66 (40%)
Frame = -3
Query: 315 AAPAIAHGLGALAPTFGSIVPFIGAGGFAAAATATGSVAGSVAVAASFGAAGAGLTGSKM 374
A PA+ L A G V AG AA G VAG AAG G+ G +
Sbjct: 242 AEPAMKALLAENAAEGGGGVAGEEAGVGAAVGVGVGVVAGGDVAGGGVAAAGGGVAGGGV 63
Query: 375 ATRIGS 380
A +G+
Sbjct: 62 AGGVGA 45
Score = 28.5 bits (62), Expect = 10.0
Identities = 12/31 (38%), Positives = 18/31 (57%)
Frame = -3
Query: 295 GIIGAAAVTGGTLMAITGGLAAPAIAHGLGA 325
G++ V GG + A GG+A +A G+GA
Sbjct: 137 GVVAGGDVAGGGVAAAGGGVAGGGVAGGVGA 45
>TC233971 UP|O35318 (O35318) DLP1 splice variant 1 (Fragment), partial
(10%)
Length = 641
Score = 30.0 bits (66), Expect = 3.4
Identities = 14/48 (29%), Positives = 27/48 (56%)
Frame = +3
Query: 5 PSMLLPPTHRYAAGALFALALHHSQIHQSPTTAQNAASVSDDPELWIH 52
P +LLPP + A+ A +A++LH + ++P+ + + +P L H
Sbjct: 42 PLLLLPPPNTTASTATYAISLHRNLPGRTPSPLSSTSLPHQNPILQSH 185
>TC215353 similar to UP|Q9FYW7 (Q9FYW7) BAC19.9, partial (29%)
Length = 688
Score = 30.0 bits (66), Expect = 3.4
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = +2
Query: 121 MTESMSTASIAES--SSGESGGHEQKSQDYLCNTTAPPVVEPHSDSKTKDSE 170
+ +S+ T AES S S GHE++ + YL N T PP P K +D E
Sbjct: 122 LQQSLRTRGGAESGPSRWTSPGHEERPKGYLFNRTPPP---PGQSRKWEDWE 268
>NP205681 receptor protein kinase-like protein
Length = 2946
Score = 29.6 bits (65), Expect = 4.5
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = -2
Query: 42 SVSDDPELWIHDNFGLLSPVLRF--LGVDDQSSNGLKETAGSSSQ 84
S DPE+W D +L V F LG+ S L+ TA S +Q
Sbjct: 1718 SSGTDPEIWFIDTLKMLKSVRFFIPLGISPSSMFRLRSTAASETQ 1584
>TC232838 similar to GB|AAP21377.1|30102918|BT006569 At1g47970 {Arabidopsis
thaliana;} , partial (46%)
Length = 902
Score = 29.6 bits (65), Expect = 4.5
Identities = 31/115 (26%), Positives = 43/115 (36%)
Frame = -3
Query: 58 LSPVLRFLGVDDQSSNGLKETAGSSSQFRHHLGSFLKLLAEESDANSSERLDKEAALTKA 117
LS + F G S + ++ SSS F S DA+SS + K
Sbjct: 729 LSDLFLFGGASAFSQSSSSTSSSSSSPFSSGSKSL--------DASSSSAVSKGRI---R 583
Query: 118 VDAMTESMSTASIAESSSGESGGHEQKSQDYLCNTTAPPVVEPHSDSKTKDSESS 172
S S S + SSS S E S+ ++ +PP S S + S SS
Sbjct: 582 YSVPKSSSSPCSSSSSSSSSSSSSESSSESLSSSSGSPPRWTSPSSSSSSSSSSS 418
>BM094733
Length = 425
Score = 29.6 bits (65), Expect = 4.5
Identities = 14/48 (29%), Positives = 27/48 (56%)
Frame = +2
Query: 5 PSMLLPPTHRYAAGALFALALHHSQIHQSPTTAQNAASVSDDPELWIH 52
P +LLPP + A+ A +A++LH + ++P+ + + +P L H
Sbjct: 65 PLLLLPPPNTTASTATYAISLHRNLPGRTPSPLSSTSLPHQNPILQPH 208
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.314 0.129 0.368
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,268,892
Number of Sequences: 63676
Number of extensions: 304772
Number of successful extensions: 1347
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 1312
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1337
length of query: 660
length of database: 12,639,632
effective HSP length: 103
effective length of query: 557
effective length of database: 6,081,004
effective search space: 3387119228
effective search space used: 3387119228
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 62 (28.5 bits)
Lotus: description of TM0195a.3