TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0192.7
         (263 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

CF922341                                                               44  6e-05
TC231258 similar to UP|Q886T6 (Q886T6) Sensory box histidine kin...    40  0.001
TC232867 similar to UP|Q9MA68 (Q9MA68) F2J6.13 protein, partial ...    30  1.5
TC226014 similar to UP|O23954 (O23954) Endo-1,4-beta-glucanase (...    28  3.3

>CF922341 
          Length = 675

 Score = 44.3 bits (103), Expect = 6e-05
 Identities = 22/86 (25%), Positives = 38/86 (43%)
 Frame = +1

Query: 16  VESVAILDNMKALVLDSYSGDSDPKDHLLYFNTKMVIIAASDAVKCRMFPSTFKSTAMAW 75
           V ++      K L  D Y G + PK+HL  +  KM   A  + +    F  +    A+ W
Sbjct: 388 VPNIITPPKFKVLDFDKYKGTTCPKNHLKMYCQKMGAYAKDEELLIHSFQESLTGVAVTW 567

Query: 76  FTTLPRGSISNFRDFSSKFLVQFSAN 101
           +T L    + +++D    F+ Q+  N
Sbjct: 568 YTNLEPSRVHSWKDLMVAFVRQYQYN 645


>TC231258 similar to UP|Q886T6 (Q886T6) Sensory box histidine kinase/response
           regulator, partial (3%)
          Length = 1374

 Score = 39.7 bits (91), Expect = 0.001
 Identities = 29/96 (30%), Positives = 38/96 (39%), Gaps = 4/96 (4%)
 Frame = +2

Query: 38  DPKDHLLYFN----TKMVIIAASDAVKCRMFPSTFKSTAMAWFTTLPRGSISNFRDFSSK 93
           DP  HL  F+    T        D +  + FP + +  A  W   L   SI N+ D    
Sbjct: 575 DPHKHLKEFHIVCSTMKPPDVQEDHIFLKAFPHSLEGVAKDWLYYLAPRSIFNWDDLKRV 754

Query: 94  FLVQFSANKNQPVTINDLYSIRQQEGESLKEYVARY 129
           FL +F           D+  IRQ   ESL EY  R+
Sbjct: 755 FLEKFFPASRTTTIRKDISGIRQLSRESLYEYWERF 862


>TC232867 similar to UP|Q9MA68 (Q9MA68) F2J6.13 protein, partial (3%)
          Length = 1144

 Score = 29.6 bits (65), Expect = 1.5
 Identities = 21/98 (21%), Positives = 39/98 (39%), Gaps = 4/98 (4%)
 Frame = -3

Query: 36  DSDPKDHLLYF----NTKMVIIAASDAVKCRMFPSTFKSTAMAWFTTLPRGSISNFRDFS 91
           + DP  HL  +    NT  +    +DA++  +   +    A  W  +    S+ ++ +  
Sbjct: 767 NEDPYAHLATYIEICNTIRLAGVPADAIRLSLLSFSLSGEAKRWLHSFKGNSLKSWDEVV 588

Query: 92  SKFLVQFSANKNQPVTINDLYSIRQQEGESLKEYVARY 129
            KFL ++            + S  Q   ESL E + R+
Sbjct: 587 EKFLKKYFPESKTAEGKAAISSFHQFPDESLSEALERF 474


>TC226014 similar to UP|O23954 (O23954) Endo-1,4-beta-glucanase (Fragment) ,
           partial (41%)
          Length = 917

 Score = 28.5 bits (62), Expect = 3.3
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +2

Query: 40  KDHLLYFNTKMVIIAASDAVKCRMFPSTFKSTAMA 74
           K HLLYF+T + + +  D V    F + ++ T  A
Sbjct: 761 KSHLLYFSTALDVFSVFDVVSFAAFCNLYRETVCA 865


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.320    0.134    0.373 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,629,424
Number of Sequences: 63676
Number of extensions: 78505
Number of successful extensions: 368
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 368
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 368
length of query: 263
length of database: 12,639,632
effective HSP length: 95
effective length of query: 168
effective length of database: 6,590,412
effective search space: 1107189216
effective search space used: 1107189216
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)