BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0192.13
(1558 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC204438 homologue to UP|Q84VH6 (Q84VH6) Gag-pol polyprotein, co... 944 0.0
TC204439 UP|Q84VI4 (Q84VI4) Gag-pol polyprotein, complete 927 0.0
NP004897 gag-protease polyprotein 603 e-172
CF920770 109 8e-24
BI784757 103 8e-22
TC235104 weakly similar to UP|Q850H8 (Q850H8) Gag-pol polyprotei... 99 1e-20
BE609922 similar to GP|29423273|g gag-pol polyprotein {Glycine m... 93 1e-18
TC222253 similar to UP|Q9ZQE4 (Q9ZQE4) Copia-like retroelement p... 77 8e-14
BI701169 75 2e-13
AW704309 weakly similar to GP|6642775|gb| gag-pol polyprotein {V... 69 1e-11
AI855818 weakly similar to GP|21741393|e OSJNBb0051N19.6 {Oryza ... 67 5e-11
CO983516 64 5e-10
TC232995 60 7e-09
TC233822 58 4e-08
CO981347 42 8e-08
BI425121 57 8e-08
BI424202 54 5e-07
BI425191 weakly similar to GP|14586969|gb| pol polyprotein {Citr... 53 1e-06
BF324756 similar to GP|29423270|gb gag-pol polyprotein {Glycine ... 51 5e-06
BF596801 weakly similar to GP|29423270|g gag-pol polyprotein {Gl... 49 2e-05
>TC204438 homologue to UP|Q84VH6 (Q84VH6) Gag-pol polyprotein, complete
Length = 4734
Score = 944 bits (2439), Expect(2) = 0.0
Identities = 481/851 (56%), Positives = 615/851 (71%), Gaps = 6/851 (0%)
Frame = +1
Query: 1 MIAFLKSIDSKTWKSIVKRWKHPVKSDKEGTSTTELKPEEEWTKEEDEEALGNSKALNAI 60
M+AFLKS+DS+TWK+++K W+HP D EG T ELKPEE+WTKEEDE ALGNSKALNA+
Sbjct: 82 MVAFLKSLDSRTWKAVIKGWEHPKMLDTEGKPTNELKPEEDWTKEEDELALGNSKALNAL 261
Query: 61 FNGVDKNMFRLINTCTVAKDAWEILRVAHEGTTRVRVSRLQLLTTQFENLKMKEEETVFE 120
FNGVDKN+FRLINTCTVAKDAWEIL+ HEGT++V++SRLQLL T+FENLKMKEEE + +
Sbjct: 262 FNGVDKNIFRLINTCTVAKDAWEILKTTHEGTSKVKMSRLQLLATKFENLKMKEEECIHD 441
Query: 121 FHMKVRDMANASFALGEPMSEEKLVRKILRSLSKRFDMKVTAIEEAQDIGNIIVDELIGS 180
FHM + ++ANA ALGE M++EKLVRKILRSL KRFDMKVTAIEEAQDI N+ VDELIGS
Sbjct: 442 FHMNILEIANACTALGERMTDEKLVRKILRSLPKRFDMKVTAIEEAQDICNMRVDELIGS 621
Query: 181 LQTFEMSLNERSEKKNKSIAFVSNTV-DDDLSEKE*DENLSEAITLLGRKFNKVMRRFDR 239
LQTFE+ L++R+EKK+K++AFVSN ++D + + DE L+ A+ LLG++FNKV+ R DR
Sbjct: 622 LQTFELGLSDRTEKKSKNLAFVSNDEGEEDEYDLDTDEGLTNAVVLLGKQFNKVLNRMDR 801
Query: 240 KYRPNVTNKQSDIIKNSGNALKDKEEDKSIKAK*VQCHECEGYGHIRSECATFLKKQGKG 299
+ +P+V N DI K G+ + K ++K +K +QCH CEGYGHI++EC T LKKQ KG
Sbjct: 802 RQKPHVRNIPFDIRK--GSEYQKKSDEKPSHSKGIQCHGCEGYGHIKAECPTHLKKQRKG 975
Query: 300 MVATWSDDDSEEEE---EPQIMGLTGKCNSEADSSD--GEISEEELAESYKLLLNKWEDA 354
+ SDD E+E + + LTG+ S DSSD EI+ +ELA SY+ L K E
Sbjct: 976 LSVCRSDDTESEQESDSDRDVNALTGRFESAEDSSDTDSEITFDELAISYRELCIKSEKI 1155
Query: 355 CEMGKKLDETVKNLKAEKQNLLITNGNLQEEIIMLK*KIEGMIKSVRMLNKGTDVFDLIL 414
+ +L + + NL+AEK+ L+ E+ L K+E M KS++MLNKG+D+ D +L
Sbjct: 1156LQQEAQLKKVIANLEAEKEAHEEEISELKGEVGFLNSKLENMTKSIKMLNKGSDMLDEVL 1335
Query: 415 EAGKEAKGRTGLGYTDNSGTEESKKITNTFIPTAKKTEFTKTNQVIQHNTPQIYRQMPYS 474
+ GK + GLG+ S + F+P T T + +H+ Q
Sbjct: 1336QLGKNVGNQRGLGFNHKSA---GRTTMTEFVPAKNSTGATMSQHRSRHHGTQ-------- 1482
Query: 475 YPLSQKEINSRWRCHHCGKHGHIRPYCYRLYRTPQHWKPTQKNVSMKGRKWQPKNNVTAL 534
+K +WRCH+CGK+GHI+P+CY L+ P H TQ + S + W PK+ + +L
Sbjct: 1483---QKKSKRKKWRCHYCGKYGHIKPFCYHLHGHPHHG--TQSSSSGRKMMWVPKHKIVSL 1647
Query: 535 VAYTSLRASSKEDRYFDSGCSRHMTGVKMYLEHVKPHSPSFVTFGDGAKGKIKGSGKIVN 594
V +TSLRAS+KED Y DSGCSRHMTGVK +L +++P S S+VTFGDG+KGKI G GK+V+
Sbjct: 1648VVHTSLRASAKEDWYLDSGCSRHMTGVKEFLVNIEPCSTSYVTFGDGSKGKITGMGKLVH 1827
Query: 595 SDSPRLTDVLLVEGLTANLISISQLCDLDLNVSFIKVGCRVTDENEEVVMIGIRSVDNCY 654
P L VLLV+GLTANLISISQLCD NV+F K C VT+E EV+M G RS DNCY
Sbjct: 1828DGLPSLNKVLLVKGLTANLISISQLCDEGFNVNFTKSECLVTNEKSEVLMKGSRSKDNCY 2007
Query: 655 MWSPLSKGLITKCLVSKEEETKLWHKKLGHLNPKSMKKIITKEAIRGLPKLKIEEGKVCG 714
+W+P + CL SKE+E K+WH++ GHL+ + MKKII K A+RG+P LKIEEG++CG
Sbjct: 2008LWTPQETSYSSTCLFSKEDEVKIWHQRFGHLHLRGMKKIIDKGAVRGIPNLKIEEGRICG 2187
Query: 715 ECQIGKQTQAPYKKLTHIATSKSLELLHMDLMGPMQKESFGGKRYVFVCVDDFSRFTWVS 774
ECQIGKQ + ++KL H TS+ LELLHMDLMGPMQ ES GGKRY +V VDDFSRFTWV+
Sbjct: 2188ECQIGKQVKMSHQKLQHQTTSRVLELLHMDLMGPMQVESLGGKRYAYVVVDDFSRFTWVN 2367
Query: 775 FIAEKSDTFEVFRELSQQLQREKGYGIVKIRSDHGKEFENSKFSEYCIKEGIKHEFSAPI 834
FI EKSDTFEVF+ELS +LQREK I +IRSDHG+EFENSKF+E+C EGI HEFSA I
Sbjct: 2368FIREKSDTFEVFKELSLRLQREKDCVIKRIRSDHGREFENSKFTEFCTSEGITHEFSAAI 2547
Query: 835 TTQQNGVVEKK 845
T QQNG+VE+K
Sbjct: 2548TPQQNGIVERK 2580
Score = 397 bits (1020), Expect(2) = 0.0
Identities = 314/717 (43%), Positives = 398/717 (54%), Gaps = 6/717 (0%)
Frame = +2
Query: 845 KTGLCKNLQG*CFMQRKFPTIFGLRP*TLLAIFIIG*PFAQELTLHCMSCGKGRNLLSNT 904
KTGLCK L G CFM + FP I GL+P*T A + L HCM GKG + LS+T
Sbjct: 2579 KTGLCKKLLGSCFMPKNFPIISGLKP*TQHATSTTESHLEEGLQPHCMKSGKGGSQLSST 2758
Query: 905 FMSLEVNATS*LIESKEENWIPRVMKEYFWDTL*IAKPTEYLTSALRQ*RNLLMWLLMT- 963
SLEV+ T IESK E WIPRVM+EY WDTL A+ EY * N MWLLM
Sbjct: 2759 STSLEVHVTFWQIESKGERWIPRVMQEYSWDTLQTAEHIEYSIPEPEL*WNPSMWLLMI* 2938
Query: 964 ---VESIWKKMMQMQMMV*LTQLMIDQLLLTTGLTLKLMKKVSKCHQGKLFHQSEFRKFI 1020
+ KKM + + +* QL + ++ T L ++ L E R+
Sbjct: 2939 LQQERRMSKKMSEHRETM*QIQLKVQKMQKTLILLQMNQTSINLTRDPPL----ESRRCT 3106
Query: 1021 PKRIL*EI*MKE*LLDPEILLLTAVSF--PELNQRTSKRL*LMNTGLMLCKRNWVNSREI 1078
P+ L*EI +E L D L L+ + P+L+ R KR *LM++G MLCK+NW NS+ +
Sbjct: 3107 PRS*L*EIQTEESLQDQGRLRLSPIHVLSPKLSPRM*KRH*LMSSGSMLCKKNWSNSKGM 3286
Query: 1079 EYGILFQDQMM*M*LVLSGFSETRQMKMVL*QGTRPG*LLKDTLRLKELILMKHLLQWLA 1138
++G F D M*L SG S T+ MK VL* TRP LLK TLRLK LMK L
Sbjct: 3287 KFGS*FLDPRELM*LAPSGSSRTKPMKKVL*PETRPDLLLKATLRLKV*TLMKLSPLLLD 3466
Query: 1139 *NQSDCC*EWHVF*SSNCIKWMLRVHS*MAI*MRRFMLNNQKALWIQLFQIMFTN*ERLC 1198
+ SDC +S+C +WM R *M *M++ M ++Q+ L IQL QIM+T RL
Sbjct: 3467 LSPSDCYLV*LASSNSSCTRWM*RARF*MDT*MKKPMWSSQRDL*IQLIQIMYTGSRRLS 3646
Query: 1199 MD*SKHLGHGMKD*LIS*QIKDTGKEG*TRLYL*EMIMET***LRYMWMI*YLEECQTIW 1258
MD*SK GMK * S K G+E TRL L +++T*** RYM M LE C+
Sbjct: 3647 MD*SKLQELGMKG*QSSLLSKGIGREELTRLSLSNKMLKT***HRYMLMTLCLEGCRMRC 3826
Query: 1259 CNSLFNK*SQNLK*VWWGN*TTFWDYK*SRWKSPCSSLKASMPRS*LKNLVLKDLLTKEL 1318
+ L N+ + NL+*V +* FWD K*SRWK+P SS KASM R+ ++L K KE
Sbjct: 3827 FDILSNRCNLNLR*VLLES*LIFWDSK*SRWKTPYSSHKASMQRTLSRSLGWKMPAIKEH 4006
Query: 1319 QQLLISS*LKMIVEFLLIQVCIGA**GVFCILLPADQTLLLQ*ECVQGIKQLPRKVI*FK 1378
LL S KM + +LI+VC A* G + I AD T +Q* VQ IK + R V * K
Sbjct: 4007 LHLLT*SCQKMKLAPVLIKVCTEA*LGAYYI*QLADLTSPMQ*VFVQDIKPILR*VT*IK 4186
Query: 1379 *KGLSNMSVEPVTMAYSMLIMKILSL*DTVMQIGMEMLMIGRVLQEEVSFWGIILFLGSV 1438
*+ NM + PVTM +I++I VM IG+E+ M + L +VS W ILF GS
Sbjct: 4187 *REF*NM*MAPVTMGLCTVIVQIQCWLGIVMLIGLEVQMTEKALLVDVSIWEPILFHGSA 4366
Query: 1439 RNKIVSLYPLLRLNT*LQEVVALSCCG*NKC*RNTMSCKMSRHYTVTT*VPSIFQRIQSN 1498
R++ V Y LL+ + QE + G*++C*R+TMS KMS H TVTT*V IF +I N
Sbjct: 4367 RSRTVCPYLLLKQSILQQEAAVHN*FG*SRC*RSTMSNKMS*HCTVTT*VLLIFLKILFN 4546
Query: 1499 TAEQNTLIFVIISFGI*LRRKSLFLNMWKLSYS*QIYSPKLWMWQSLKN*EGS*EFV 1555
TAE +TL I I L K +M L *QI+S + WM SLKN* S FV
Sbjct: 4547 TAEPSTLTLDITILEILLMIKLSHWSMLTLRNK*QIFSQRHWMQISLKN*GASWAFV 4717
>TC204439 UP|Q84VI4 (Q84VI4) Gag-pol polyprotein, complete
Length = 4731
Score = 927 bits (2396), Expect = 0.0
Identities = 474/850 (55%), Positives = 612/850 (71%), Gaps = 5/850 (0%)
Frame = +1
Query: 1 MIAFLKSIDSKTWKSIVKRWKHPVKSDKEGTSTTELKPEEEWTKEEDEEALGNSKALNAI 60
M+AFLKS+DS+TWK+++K W+HP D EG T ELKPEE+WTKEEDE ALGNSKALNA+
Sbjct: 82 MVAFLKSLDSRTWKAVIKGWEHPKMLDTEGKPTDELKPEEDWTKEEDELALGNSKALNAL 261
Query: 61 FNGVDKNMFRLINTCTVAKDAWEILRVAHEGTTRVRVSRLQLLTTQFENLKMKEEETVFE 120
FNGVDKN+FRLINTCTVAKDAWEIL++ HEGT++V++SRLQLL T+FENLKMKEEE + +
Sbjct: 262 FNGVDKNIFRLINTCTVAKDAWEILKITHEGTSKVKMSRLQLLATKFENLKMKEEECIHD 441
Query: 121 FHMKVRDMANASFALGEPMSEEKLVRKILRSLSKRFDMKVTAIEEAQDIGNIIVDELIGS 180
FHM + ++ANA ALGE +++EKLVRKILRSL KRFDMKVTAIEEAQDI N+ VDELIGS
Sbjct: 442 FHMNILEIANACTALGERITDEKLVRKILRSLPKRFDMKVTAIEEAQDICNMRVDELIGS 621
Query: 181 LQTFEMSLNERSEKKNKSIAFVSNTV-DDDLSEKE*DENLSEAITLLGRKFNKVMRRFDR 239
LQTFE+ L++R+EKK+K++AFVSN ++D + + DE L+ A+ LLG++FNKV+ R D+
Sbjct: 622 LQTFELGLSDRAEKKSKNLAFVSNDEGEEDEYDLDTDEGLTNAVVLLGKQFNKVLNRMDK 801
Query: 240 KYRPNVTNKQSDIIKNSGNALKDKEEDKSIKAK*VQCHECEGYGHIRSECATFLKKQGKG 299
+ +P+V N DI K G+ + + + K +K +QCH CEGYGHI +EC T LKK KG
Sbjct: 802 RQKPHVQNIPFDIRK--GSKYQKRSDVKPSHSKGIQCHGCEGYGHIIAECPTHLKKHRKG 975
Query: 300 MVATWSDDDSEEEEEPQ--IMGLTGKCNSEADSSD--GEISEEELAESYKLLLNKWEDAC 355
+ SD +SE+E + + LTG + DSSD EI+ +ELA SY+ L K E
Sbjct: 976 LSVCQSDTESEQESDSDRDVNALTGIFETAEDSSDTDSEITFDELAASYRKLCIKSEKIL 1155
Query: 356 EMGKKLDETVKNLKAEKQNLLITNGNLQEEIIMLK*KIEGMIKSVRMLNKGTDVFDLILE 415
+ +L + + +L+AEK+ L+ E+ L K+E M KS++MLNKG+D D +L
Sbjct: 1156QQEAQLKKVIADLEAEKEAHKEEISELKGEVGFLNSKLENMTKSIKMLNKGSDTLDEVLL 1335
Query: 416 AGKEAKGRTGLGYTDNSGTEESKKITNTFIPTAKKTEFTKTNQVIQHNTPQIYRQMPYSY 475
GK A + GLG+ S + F+P +T T + +H+ Q
Sbjct: 1336LGKNAGNQRGLGFNPKSA---GRTTMTEFVPAKNRTGATMSQHRSRHHGMQ--------- 1479
Query: 476 PLSQKEINSRWRCHHCGKHGHIRPYCYRLYRTPQHWKPTQKNVSMKGRKWQPKNNVTALV 535
+K +WRCH+CGK+GHI+P+CY L+ P H TQ + S K W PK+ +LV
Sbjct: 1480--QKKSKRKKWRCHYCGKYGHIKPFCYHLHGHPHHG--TQSSNSRKKMMWVPKHKAVSLV 1647
Query: 536 AYTSLRASSKEDRYFDSGCSRHMTGVKMYLEHVKPHSPSFVTFGDGAKGKIKGSGKIVNS 595
+TSLRAS+KED Y DSGCSRHMTGVK +L +++P S S+VTFGDG+KGKI G GK+V+
Sbjct: 1648VHTSLRASAKEDWYLDSGCSRHMTGVKEFLLNIEPCSTSYVTFGDGSKGKIIGMGKLVHD 1827
Query: 596 DSPRLTDVLLVEGLTANLISISQLCDLDLNVSFIKVGCRVTDENEEVVMIGIRSVDNCYM 655
P L VLLV+GLTANLISISQLCD NV+F K C VT+E EV+M G RS DNCY+
Sbjct: 1828GLPSLNKVLLVKGLTANLISISQLCDEGFNVNFTKSECLVTNEKSEVLMKGSRSKDNCYL 2007
Query: 656 WSPLSKGLITKCLVSKEEETKLWHKKLGHLNPKSMKKIITKEAIRGLPKLKIEEGKVCGE 715
W+P + CL SKE+E ++WH++ GHL+ + MKKII K A+RG+P LKIEEG++CGE
Sbjct: 2008WTPQETSYSSTCLSSKEDEVRIWHQRFGHLHLRGMKKIIDKGAVRGIPNLKIEEGRICGE 2187
Query: 716 CQIGKQTQAPYKKLTHIATSKSLELLHMDLMGPMQKESFGGKRYVFVCVDDFSRFTWVSF 775
CQIGKQ + ++KL H TS+ LELLHMDLMGPMQ ES GGKRY +V VDDFSRFTWV+F
Sbjct: 2188CQIGKQVKMSHQKLQHQTTSRVLELLHMDLMGPMQVESLGGKRYAYVVVDDFSRFTWVNF 2367
Query: 776 IAEKSDTFEVFRELSQQLQREKGYGIVKIRSDHGKEFENSKFSEYCIKEGIKHEFSAPIT 835
I EKS+TFEVF+ELS +LQREK I +IRSDHG+EFENS+F+E+C EGI HEFSA IT
Sbjct: 2368IREKSETFEVFKELSLRLQREKDCVIKRIRSDHGREFENSRFTEFCTSEGITHEFSAAIT 2547
Query: 836 TQQNGVVEKK 845
QQNG+VE+K
Sbjct: 2548PQQNGIVERK 2577
Score = 378 bits (971), Expect = e-105
Identities = 308/729 (42%), Positives = 397/729 (54%), Gaps = 6/729 (0%)
Frame = +2
Query: 833 PITTQQNGVVEKKTGLCKNLQG*CFMQRKFPTIFGLRP*TLLAIFIIG*PFAQELTLHCM 892
P+ + G + KTGLCK L G CFM + FP I GL+P*T A + L CM
Sbjct: 2540 PLHHNRMG*LRGKTGLCKRLLGSCFMPKNFPIISGLKP*TQHATSTTESH*EEGLQPPCM 2719
Query: 893 SCGKGRNLLSNTFMSLEVNATS*LIESKEENWIPRVMKEYFWDTL*IAKPTEYLTSALRQ 952
GKG + LS+T SLEV+ TS IESKEE WIPRVM+EY WDTL A+ EY Q
Sbjct: 2720 KSGKGGSHLSSTSTSLEVHVTSWQIESKEERWIPRVMQEYSWDTLQTAEHIEYSIPEPEQ 2899
Query: 953 *RNLLMWLLMTV----ESIWKKMMQMQMMV*LTQLMIDQLLLTTGLTLKLMKKVSKCHQG 1008
* N MWLLM + KKM + + +* QL ++++ T L +
Sbjct: 2900 *WNPSMWLLMICLQQERRMSKKMSEHRETM*QMQLKVEKMQKTLILLQMNQTSTNPTRDP 3079
Query: 1009 KLFHQSEFRKFIPKRIL*EI*MKE*LLDPEILLL--TAVSFPELNQRTSKRL*LMNTGLM 1066
L E R+ P+ L*EI + L D L T V P+L+ R KR * M++G M
Sbjct: 3080 PL----ESRRCTPRS*L*EIQTEGSLQDQGRLRSSQTHVLSPKLSPRM*KRH*QMSSGSM 3247
Query: 1067 LCKRNWVNSREIEYGILFQDQMM*M*LVLSGFSETRQMKMVL*QGTRPG*LLKDTLRLKE 1126
LCK+NW NS+ ++ G F M*L SG S T+ MK V * TRP LLK TLRLK
Sbjct: 3248 LCKKNWSNSKGMKSGS*FLGLRELM*LAPSGSSRTKPMKKVS*PETRPDWLLKATLRLKV 3427
Query: 1127 LILMKHLLQWLA*NQSDCC*EWHVF*SSNCIKWMLRVHS*MAI*MRRFMLNNQKALWIQL 1186
LM+ L Q L + SD V +S+C +WM R H *M *M++ M ++Q+ L +L
Sbjct: 3428 *TLMRLLPQLLDLSPSDYYLV*LVSSNSSCTRWM*RAHF*MDT*MKKSMWSSQRDLQTRL 3607
Query: 1187 FQIMFTN*ERLCMD*SKHLGHGMKD*LIS*QIKDTGKEG*TRLYL*EMIMET***LRYMW 1246
QIM+T RL MD*SK GMK * S K G+E TR L +++T** RYM
Sbjct: 3608 IQIMYTGSRRLSMD*SKLQELGMKG*QSSLLSKGIGREELTRPSLSNKMLKT**LHRYML 3787
Query: 1247 MI*YLEECQTIWCNSLFNK*SQNLK*VWWGN*TTFWDYK*SRWKSPCSSLKASMPRS*LK 1306
M LE C+ + LFN+ + NL+*V +* FWD+K*SRW++P SS KA M R+ +
Sbjct: 3788 MTLCLEGCRMRCFDILFNRCNLNLR*VLLES*LIFWDFK*SRWRTPYSSHKAGMQRTLSR 3967
Query: 1307 NLVLKDLLTKELQQLLISS*LKMIVEFLLIQVCIGA**GVFCILLPADQTLLLQ*ECVQG 1366
+L + + K LL S +M +LI+VC A**G + I AD T +Q* VQ
Sbjct: 3968 SLGWRMPVIKGHLHLLT*SCQRMKQAPVLIKVCTEA**GAYYI*QLADPTSPMQ*VFVQD 4147
Query: 1367 IKQLPRKVI*FK*KGLSNMSVEPVTMAYSMLIMKILSL*DTVMQIGMEMLMIGRVLQEEV 1426
IK +PR V * K*+ NM + VTM +I++I VM IG+E+ M + L +
Sbjct: 4148 IKPIPR*VT*LK*REF*NM*MALVTMGLCTVIVQIQCWLGIVMLIGLEVQMTEKALLVDA 4327
Query: 1427 SFWGIILFLGSVRNKIVSLYPLLRLNT*LQEVVALSCCG*NKC*RNTMSCKMSRHYTVTT 1486
S W LF GS R++ V Y + + QE S G*++C*R+TMS KMS H TVTT
Sbjct: 4328 SIWETTLFHGSARSRTVCPYLQQKPSILQQEAAVHS*FG*SRC*RSTMSNKMS*HCTVTT 4507
Query: 1487 *VPSIFQRIQSNTAEQNTLIFVIISFGI*LRRKSLFLNMWKLSYS*QIYSPKLWMWQSLK 1546
*V IF +I NTAE +TL I I L K +M L *QI+S +LWM SLK
Sbjct: 4508 *VLLIFLKILFNTAEPSTLTLDITISEILLMIK*SH*SMLTLRNK*QIFSQRLWMQISLK 4687
Query: 1547 N*EGS*EFV 1555
N* S FV
Sbjct: 4688 N*GASWAFV 4714
>NP004897 gag-protease polyprotein
Length = 1923
Score = 603 bits (1554), Expect = e-172
Identities = 317/601 (52%), Positives = 421/601 (69%), Gaps = 7/601 (1%)
Frame = +1
Query: 1 MIAFLKSIDSKTWKSIVKRWKHPVKSDKEGTSTTELKPEEEWTKEEDEEALGNSKALNAI 60
M+AFLKS+DS+TWK+++K W+HP D EG T LKPEE+WTKEEDE ALGNSKALNA+
Sbjct: 82 MVAFLKSLDSRTWKAVIKDWEHPKMLDTEGKPTDGLKPEEDWTKEEDELALGNSKALNAL 261
Query: 61 FNGVDKNMFRLINTCTVAKDAWEILRVAHEGTTRVRVSRLQLLTTQFENLKMKEEETVFE 120
FNGVDKN+FRLINTCTVAKDAWEIL+ HEGT++V++SRLQLL T+FENLKMKEEE + +
Sbjct: 262 FNGVDKNIFRLINTCTVAKDAWEILKTTHEGTSKVKMSRLQLLATKFENLKMKEEECIHD 441
Query: 121 FHMKVRDMANASFALGEPMSEEKLVRKILRSLSKRFDMKVTAIEEAQDIGNIIVDELIGS 180
FHM + ++ANA ALGE M++EKLVRKILRSL KRFDMKVTAIEEAQDI N+ VDELIGS
Sbjct: 442 FHMNILEIANACTALGERMTDEKLVRKILRSLPKRFDMKVTAIEEAQDICNLRVDELIGS 621
Query: 181 LQTFEMSLNERSEKKNKSIAFVSNTV-DDDLSEKE*DENLSEAITLLGRKFNKVMRRFDR 239
LQTFE+ L++R+EKK+K++AFVSN ++D + + DE L+ A+ LLG++FNKV+ R DR
Sbjct: 622 LQTFELGLSDRTEKKSKNLAFVSNDEGEEDEYDLDTDEGLTNAVVLLGKQFNKVLNRMDR 801
Query: 240 KYRPNVTNKQSDIIKNSGNALKDKEEDKSIKAK*VQCHECEGYGHIRSECATFLKKQGKG 299
+ +P+V N DI K G+ + + ++K +K QCH CEGYGHI++EC T LKKQ KG
Sbjct: 802 RQKPHVRNIPFDIRK--GSEYQKRSDEKPSHSKGFQCHGCEGYGHIKAECPTHLKKQRKG 975
Query: 300 MVATWSDDDSEEEE---EPQIMGLTGKCNSEADSS--DGEISEEELAESYKLLLNKWEDA 354
+ SDD E+E + + LTG+ S DSS D EI+ +ELA SY+ L K E
Sbjct: 976 LSVCRSDDTESEQESDSDRDVNALTGRFESAEDSSDTDSEITFDELATSYRELCIKSEKI 1155
Query: 355 CEMGKKLDETVKNLKAEKQNLLITNGNLQEEIIMLK*KIEGMIKSVRMLNKGTDVFDLIL 414
+ +L + + NL+AEK+ L+ E+ L K+E M KS++MLNKG+D+ D +L
Sbjct: 1156LQQEAQLKKVIANLEAEKEAHEEEISELKGEVGFLNSKLENMTKSIKMLNKGSDMLDEVL 1335
Query: 415 EAGKEAKGRTGLGYTDNSGTEESKKITNT-FIPTAKKTEFTKTNQVIQHNTPQIYRQMPY 473
+ GK + GLG+ S + +IT T F+P T T + +H+ Q
Sbjct: 1336QLGKNVGNQRGLGFNHKS----AGRITMTEFVPAKISTGATMSQHRSRHHGTQ------- 1482
Query: 474 SYPLSQKEINSRWRCHHCGKHGHIRPYCYRLYRTPQHWKPTQKNVSMKGRKWQPKNNVTA 533
+K +WRCH+CGK+GHI+P+CY L+ P H TQ + S + W PK+ + +
Sbjct: 1483----QKKSKRKKWRCHYCGKYGHIKPFCYHLHGHPHH--GTQSSSSRRKMMWVPKHKIVS 1644
Query: 534 LVAYTSLRASSKEDRYFDSGCSRHMTGVKMYLEHVKPHSPSFVTFGDGAKGKIKGSGKIV 593
LV +TSLRAS+KED Y DSGCSRHMTGVK +L +++P S S+VTFGDG+KGKI G GK+V
Sbjct: 1645LVVHTSLRASAKEDWYLDSGCSRHMTGVKEFLVNIEPCSTSYVTFGDGSKGKITGMGKLV 1824
Query: 594 N 594
+
Sbjct: 1825H 1827
>CF920770
Length = 581
Score = 109 bits (273), Expect = 8e-24
Identities = 57/164 (34%), Positives = 93/164 (55%), Gaps = 4/164 (2%)
Frame = -2
Query: 29 EGTSTTEL----KPEEEWTKEEDEEALGNSKALNAIFNGVDKNMFRLINTCTVAKDAWEI 84
+G+S++E KP + W++E+ + N KA N I + + + + ++ C AK+ W+
Sbjct: 505 DGSSSSESITIEKPRDRWSEEDRKRVQYNLKAKNIITSALGMDEYFRVSNCKSAKEMWDT 326
Query: 85 LRVAHEGTTRVRVSRLQLLTTQFENLKMKEEETVFEFHMKVRDMANASFALGEPMSEEKL 144
LR+ HEGTT V+ SR+ LT ++E +M E + + + N ALG+ E L
Sbjct: 325 LRLTHEGTTDVKRSRINALTHEYELFRMNTNENIQSMQKRFTHIVNHLAALGKEFQNEDL 146
Query: 145 VRKILRSLSKRFDMKVTAIEEAQDIGNIIVDELIGSLQTFEMSL 188
+ K+LR LS+ + KVTAI E++D+ N+ + L G LQ EM L
Sbjct: 145 INKVLRCLSREWQPKVTAISESRDLSNMSLATLFGKLQEHEMEL 14
>BI784757
Length = 430
Score = 103 bits (256), Expect = 8e-22
Identities = 50/138 (36%), Positives = 83/138 (59%)
Frame = +1
Query: 696 KEAIRGLPKLKIEEGKVCGECQIGKQTQAPYKKLTHIATSKSLELLHMDLMGPMQKESFG 755
+E + GLP++K +VC C KQ+++ +K+ I + LE+++ D+ GPMQ ES G
Sbjct: 19 REMVLGLPQIK-PPSEVCDGCLQCKQSRSTFKQNVPIRAKEKLEVIYSDVCGPMQTESLG 195
Query: 756 GKRYVFVCVDDFSRFTWVSFIAEKSDTFEVFRELSQQLQREKGYGIVKIRSDHGKEFENS 815
G RY +D+ +R WV I KSD FEVF + +++ G I +R++ G E+ ++
Sbjct: 196 GNRYFISFIDELTRKVWVYLIRRKSDFFEVFEKFKNMAKKQSGSLIKILRTNGGGEYVST 375
Query: 816 KFSEYCIKEGIKHEFSAP 833
+F E+C ++GI HE + P
Sbjct: 376 EFQEFCDQQGIIHEVTPP 429
>TC235104 weakly similar to UP|Q850H8 (Q850H8) Gag-pol polyprotein
(Fragment), partial (28%)
Length = 865
Score = 99.4 bits (246), Expect = 1e-20
Identities = 80/283 (28%), Positives = 131/283 (46%), Gaps = 10/283 (3%)
Frame = +2
Query: 573 PSFVTFGDGAKGKIKGSGKIVNSDSPRLTDVLLVEGLTANLISISQLCDLDLNVSFIKVG 632
P F+T DG++ G G + + S L V+ + G N+ S+SQL
Sbjct: 11 PYFITLADGSRVVATGIGHVSPTSSLSLNSVVFILGCPFNITSLSQLTRFR--------N 166
Query: 633 CRVT-DENEEVVM---------IGIRSVDNCYMWSPLSKGLITKCLVSKEEETKLWHKKL 682
C VT D N V+ +GI S Y+ LS + S KL H++L
Sbjct: 167 CSVTFDANSFVIQECGTGWTIGVGIESHGLYYLKPNLS------WVCSAVTSPKLLHERL 328
Query: 683 GHLNPKSMKKIITKEAIRGLPKLKIEEGKVCGECQIGKQTQAPYKKLTHIATSKSLELLH 742
GH + +K ++ P L+ + C CQ+GK ++ + + S L ++H
Sbjct: 329 GHPHLSKLKIMV--------PSLEKIKDLFCESCQLGKHVRSSXRHVESRVDSPFL-VIH 481
Query: 743 MDLMGPMQKESFGGKRYVFVCVDDFSRFTWVSFIAEKSDTFEVFRELSQQLQREKGYGIV 802
D+ GP + S RY +D+FS+ T V + E+S+ +++ ++ + G I
Sbjct: 482 XDIWGPNRVSSMS-YRYFVTFIDEFSQCTRVFLMKERSEILSFLTSVNK-IKTQFGKTIK 655
Query: 803 KIRSDHGKEFENSKFSEYCIKEGIKHEFSAPITTQQNGVVEKK 845
+RSD+ KE+ +S S + +GI H+FS P T QQN + E+K
Sbjct: 656 ILRSDNAKEYFSSVISPFXSAQGILHQFSCPHTPQQNDIAERK 784
>BE609922 similar to GP|29423273|g gag-pol polyprotein {Glycine max}, partial
(7%)
Length = 340
Score = 92.8 bits (229), Expect = 1e-18
Identities = 48/115 (41%), Positives = 80/115 (68%), Gaps = 1/115 (0%)
Frame = +2
Query: 175 DELIGSLQTFEMSLNERSEKKNKSIAFVSNTVDDDLS-EKE*DENLSEAITLLGRKFNKV 233
DEL+GSLQTFE+ L++R+EKK+K++AF+SN ++ + + DE L+ A LLG++F+KV
Sbjct: 2 DELMGSLQTFELGLSDRAEKKSKNLAFMSNDEGEEGEYDLDTDEGLTNAGVLLGKQFSKV 181
Query: 234 MRRFDRKYRPNVTNKQSDIIKNSGNALKDKEEDKSIKAK*VQCHECEGYGHIRSE 288
M R DR+ +P+V +++ D+ K+S + K + + + +QCH CEG H+ +E
Sbjct: 182 MNRIDRRQKPHVQSRRGDVRKSS--KYQRKWGVRPMHGRGMQCHGCEGVWHVIAE 340
>TC222253 similar to UP|Q9ZQE4 (Q9ZQE4) Copia-like retroelement pol
polyprotein, partial (4%)
Length = 919
Score = 76.6 bits (187), Expect = 8e-14
Identities = 43/153 (28%), Positives = 79/153 (51%)
Frame = +1
Query: 693 IITKEAIRGLPKLKIEEGKVCGECQIGKQTQAPYKKLTHIATSKSLELLHMDLMGPMQKE 752
I ++ + LP + I +G VC C+IGK+ + + K L+++H+DL ++
Sbjct: 274 IFQEKIVYDLPIMNILDG-VCDTCEIGKKHRESFPTGKSWRMKKLLKIVHLDLC-TVEIP 447
Query: 753 SFGGKRYVFVCVDDFSRFTWVSFIAEKSDTFEVFRELSQQLQREKGYGIVKIRSDHGKEF 812
+ G Y +DDFS+ WV F+ +KS+ F+ +++ G + + D G+E+
Sbjct: 448 THGDNNYFITFIDDFSKKMWVYFLKQKSEACNAFKMFKAFAEKQNGCKVKALIIDKGQEY 627
Query: 813 ENSKFSEYCIKEGIKHEFSAPITTQQNGVVEKK 845
++ + K GI+H+ + T Q NGV E+K
Sbjct: 628 --LSYTIFFEKHGIQHQLTTKYTPQHNGVTERK 720
>BI701169
Length = 407
Score = 75.5 bits (184), Expect = 2e-13
Identities = 36/92 (39%), Positives = 54/92 (58%)
Frame = +2
Query: 761 FVCVDDFSRFTWVSFIAEKSDTFEVFRELSQQLQREKGYGIVKIRSDHGKEFENSKFSEY 820
F+ +DDFSR TWV F K + FE F++ +++E G+ I +RSD G EF +++F +Y
Sbjct: 116 FLFIDDFSRKTWVYFFKHKLEVFENFKKFKAIVEKESGFKIKAMRSDRGGEF*SNEFQKY 295
Query: 821 CIKEGIKHEFSAPITTQQNGVVEKKTGLCKNL 852
C GI+ + QQNGV E+K N+
Sbjct: 296 CDDHGIRRPLMVLRSPQQNGVAERKNRTILNM 391
>AW704309 weakly similar to GP|6642775|gb| gag-pol polyprotein {Vitis
vinifera}, partial (23%)
Length = 423
Score = 69.3 bits (168), Expect = 1e-11
Identities = 38/139 (27%), Positives = 74/139 (52%)
Frame = -1
Query: 56 ALNAIFNGVDKNMFRLINTCTVAKDAWEILRVAHEGTTRVRVSRLQLLTTQFENLKMKEE 115
A + +F GV + +F I T K W+ L+ + G R+R ++ L +FE +MKE
Sbjct: 423 ARSCLFTGVSQMIFIRIMTLKSPKAIWDCLKEEYAGDDRIRSMQVLNLRREFEL*RMKES 244
Query: 116 ETVFEFHMKVRDMANASFALGEPMSEEKLVRKILRSLSKRFDMKVTAIEEAQDIGNIIVD 175
ET+ E+ K+ + N LG ++ ++V K L ++ +R++ + ++E +D+ I +
Sbjct: 243 ETIKEYSNKLLGIVNKIKLLGSDFADSRIVEKNLVTVPERYEAFIASLENTKDLSKITLA 64
Query: 176 ELIGSLQTFEMSLNERSEK 194
E++ +LQ E R ++
Sbjct: 63 EVLHALQAQEQRRLMRQDR 7
>AI855818 weakly similar to GP|21741393|e OSJNBb0051N19.6 {Oryza sativa
(japonica cultivar-group)}, partial (10%)
Length = 463
Score = 67.4 bits (163), Expect = 5e-11
Identities = 54/147 (36%), Positives = 79/147 (53%)
Frame = -1
Query: 1068 CKRNWVNSREIEYGILFQDQMM*M*LVLSGFSETRQMKMVL*QGTRPG*LLKDTLRLKEL 1127
CK+N +N +EI G ++ + + +GF E M M R * K ++ +E
Sbjct: 454 CKKN*INLKEIMCGN**KNLKIILS*EQNGFLEIN*MNMA*LLEIRLD**QKGIIKKRE* 275
Query: 1128 ILMKHLLQWLA*NQSDCC*EWHVF*SSNCIKWMLRVHS*MAI*MRRFMLNNQKALWIQLF 1187
+ KH+LQ * +C * + * N IKWML+V *M +++MLNN +AL ++
Sbjct: 274 TMKKHMLQLQD*KSLECF*HMYP**ILNSIKWMLKVLF*MV*FKKKYMLNNPQALKSRIN 95
Query: 1188 QIMFTN*ERLCMD*SKHLGHGMKD*LI 1214
Q+MF N +RL M *+K LG GM * I
Sbjct: 94 QLMFINCKRLFMV*NKPLGRGMNV*AI 14
>CO983516
Length = 724
Score = 63.9 bits (154), Expect = 5e-10
Identities = 45/95 (47%), Positives = 58/95 (60%)
Frame = +3
Query: 1153 SSNCIKWMLRVHS*MAI*MRRFMLNNQKALWIQLFQIMFTN*ERLCMD*SKHLGHGMKD* 1212
+S+C +WM R *M *M++ M ++Q+ L IQL QIM+T RL MD*SK GMK *
Sbjct: 426 NSSCTRWM*RARF*MDT*MKKSMWSSQRDL*IQLIQIMYTGSRRLSMD*SKLQELGMKG* 605
Query: 1213 LIS*QIKDTGKEG*TRLYL*EMIMET***LRYMWM 1247
K G+E TRL L +++T*** RYM M
Sbjct: 606 QSYLLSKGIGREELTRLSLSNKMLKT***HRYMLM 710
>TC232995
Length = 1009
Score = 60.1 bits (144), Expect = 7e-09
Identities = 50/133 (37%), Positives = 67/133 (49%)
Frame = +3
Query: 1176 LNNQKALWIQLFQIMFTN*ERLCMD*SKHLGHGMKD*LIS*QIKDTGKEG*TRLYL*EMI 1235
LNN L + Q MF N +RL M *+K LGHGM D*+I K++ + Y *
Sbjct: 3 LNNPLVLKFLINQTMFINYKRLFMV*NKPLGHGMND*VIFFLKKNSPEVKWIPHYS*RES 182
Query: 1236 MET***LRYMWMI*YLEECQTIWCNSLFNK*SQNLK*VWWGN*TTFWDYK*SRWKSPCSS 1295
+ +YM MI*+L+ S NLK W N*+TFWDYK S+ SS
Sbjct: 183 IMIFCWFKYMLMI*FLDPLMIHCARSFPLICKVNLKCQ*WEN*STFWDYKSSKLNKVYSS 362
Query: 1296 LKASMPRS*LKNL 1308
+ + R+* K+L
Sbjct: 363 INPNTARN*SKDL 401
>TC233822
Length = 632
Score = 57.8 bits (138), Expect = 4e-08
Identities = 55/213 (25%), Positives = 87/213 (40%), Gaps = 2/213 (0%)
Frame = +2
Query: 545 KEDRYFDSGCSRHMTG-VKMYLEHVKPHSPSFVTFGDGAKGKIKGSGKIVNSDSPRLTDV 603
++ R DS S H+ G ++ P P +T +G K KG GK S L +
Sbjct: 26 QDPRVIDSTASDHIFGNSSLFTSQSPPKIPHLITLANGTKVTSKGFGKFSIFPSLNLDPI 205
Query: 604 LLVEGLTANLISISQLCD-LDLNVSFIKVGCRVTDENEEVVMIGIRSVDNCYMWSPLSKG 662
V NL+S+SQL L+ +++F V E + +IG+ + +S
Sbjct: 206 HFVPNCPFNLVSLSQLTKALNFSITF-DADSFVIQERDTSWLIGVEHESRGLYYLEISSS 382
Query: 663 LITKCLVSKEEETKLWHKKLGHLNPKSMKKIITKEAIRGLPKLKIEEGKVCGECQIGKQT 722
+ C + KL H LGH ++ + + L KL++ E C CQ+GK
Sbjct: 383 M--SCFAT--PSPKLLHNHLGH------PHLLKLKMVPSLNKLQVLE---CESCQLGKHV 523
Query: 723 QAPYKKLTHIATSKSLELLHMDLMGPMQKESFG 755
+ + K T S + D+ P SFG
Sbjct: 524 RF-FPKRTETRCSSVFSTIPSDIWDPSCVTSFG 619
>CO981347
Length = 624
Score = 41.6 bits (96), Expect(2) = 8e-08
Identities = 22/59 (37%), Positives = 33/59 (55%)
Frame = +2
Query: 786 FRELSQQLQREKGYGIVKIRSDHGKEFENSKFSEYCIKEGIKHEFSAPITTQQNGVVEK 844
FRE + + G + +R+D+G EF +F+E+C K GIK P T QNG+ E+
Sbjct: 116 FRE*HTLIGNQLGTKLKVLRTDNGLEFVLEQFNEFCRKIGIKRHKIVPHTP*QNGLAER 292
Score = 34.7 bits (78), Expect(2) = 8e-08
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +3
Query: 748 PMQKESFGGKRYVFVCVDDFSRFTWVSFIAEKSDTFE 784
P + ++ GG Y +DDFSR W+ + KS++F+
Sbjct: 3 PSRVKTHGGSSYFLTIIDDFSRRVWLYVLKNKSESFK 113
>BI425121
Length = 412
Score = 56.6 bits (135), Expect = 8e-08
Identities = 36/114 (31%), Positives = 56/114 (48%), Gaps = 5/114 (4%)
Frame = +3
Query: 753 SFGGKRYVFVCVDDFSRFTWVSFIAEKSDTFEVFRELSQQLQREKGYGIVKIRSDHGKEF 812
S G K+Y F+ VDD+SR+TWV F+A K ++ F + + +K + + +
Sbjct: 6 SLGCKKYEFLTVDDYSRYTWVYFLAHKHESLRYF---IRGFKMKKVFVFLLLEVTMELSL 176
Query: 813 ENSKFSEYCIKEGIKHEFSAPITTQQNGVVEKKTGLCKN-----LQG*CFMQRK 861
+ +C + GI H S P T Q+N VVE+K + L CF+Q K
Sbjct: 177 RILS*NHFCERNGIFHNLS*PRTPQENRVVERKNRTLQEKARTILFTTCFVQNK 338
>BI424202
Length = 421
Score = 53.9 bits (128), Expect = 5e-07
Identities = 33/114 (28%), Positives = 62/114 (53%), Gaps = 1/114 (0%)
Frame = -3
Query: 664 ITKCLVSKEEETKLWHKKLGHLNPKSMKKIITKEAIRGLPKLKIEEGKVCGECQIGKQTQ 723
+ +C+++ EE + LWH++LGH++ + +K+++ + L L + + +C GKQT
Sbjct: 413 LKRCIMN-EESSMLWHRRLGHISIERIKRLVNEGV---LSTLDFADFETYVDCIKGKQTN 246
Query: 724 APYKKLTHIATSKSLELLHMDLMGP-MQKESFGGKRYVFVCVDDFSRFTWVSFI 776
K +S LE++H D+ P M S +Y +DD+SR+ ++ FI
Sbjct: 245 KSKKGAKR--SSNLLEIIHTDICCPDMDANSL---KYFITFIDDYSRYMYLYFI 99
>BI425191 weakly similar to GP|14586969|gb| pol polyprotein {Citrus x
paradisi}, partial (7%)
Length = 423
Score = 52.8 bits (125), Expect = 1e-06
Identities = 29/107 (27%), Positives = 50/107 (46%)
Frame = +3
Query: 705 LKIEEGKVCGECQIGKQTQAPYKKLTHIATSKSLELLHMDLMGPMQKESFGGKRYVFVCV 764
L + +C +C K T + T + LE++H D+ P SFG +RY +
Sbjct: 18 LAFSDLNICVDCIKEKHTMKRATRSTQL-----LEIMHTDICRPFDVNSFGKERYFITFI 182
Query: 765 DDFSRFTWVSFIAEKSDTFEVFRELSQQLQREKGYGIVKIRSDHGKE 811
DD+S + +V + EK +V +++R+ + +RSD G E
Sbjct: 183 DDYSHYGYVYLLHEKFQAVDVLEIHLNEVERQLDRKVKVVRSDRGGE 323
>BF324756 similar to GP|29423270|gb gag-pol polyprotein {Glycine max},
partial (2%)
Length = 121
Score = 50.8 bits (120), Expect = 5e-06
Identities = 22/35 (62%), Positives = 30/35 (84%)
Frame = -1
Query: 535 VAYTSLRASSKEDRYFDSGCSRHMTGVKMYLEHVK 569
V +TSLRAS+K+D + DSGCSRHMTGVK +L +++
Sbjct: 106 VVHTSLRASAKQDWHIDSGCSRHMTGVKEFLLYIE 2
>BF596801 weakly similar to GP|29423270|g gag-pol polyprotein {Glycine max},
partial (7%)
Length = 336
Score = 48.9 bits (115), Expect = 2e-05
Identities = 38/112 (33%), Positives = 57/112 (49%)
Frame = +1
Query: 1050 LNQRTSKRL*LMNTGLMLCKRNWVNSREIEYGILFQDQMM*M*LVLSGFSETRQMKMVL* 1109
+N + K+ * M G + CK+N N +E YG ++ + + L +GF E M MV
Sbjct: 1 VNLKI*KKP**MIIGSLSCKKN*TNLKETMYGN**KNLKIILLLEQNGFLEIN*MNMV*L 180
Query: 1110 QGTRPG*LLKDTLRLKELILMKHLLQWLA*NQSDCC*EWHVF*SSNCIKWML 1161
+PG* KD ++ +E + KH+L * +C H *+ N IKWML
Sbjct: 181 LEIKPG**RKDIIKKRE*TMKKHMLLLQD*KPLECFWHMHP**TLNFIKWML 336
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.339 0.147 0.472
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,331,272
Number of Sequences: 63676
Number of extensions: 878636
Number of successful extensions: 6844
Number of sequences better than 10.0: 66
Number of HSP's better than 10.0 without gapping: 6576
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6779
length of query: 1558
length of database: 12,639,632
effective HSP length: 110
effective length of query: 1448
effective length of database: 5,635,272
effective search space: 8159873856
effective search space used: 8159873856
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.9 bits)
S2: 65 (29.6 bits)
Lotus: description of TM0192.13