BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0192.11
(571 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC216885 40 0.003
TC212535 29 0.039
TC221843 33 0.34
BU927182 33 0.34
TC205198 similar to UP|Q6YBV7 (Q6YBV7) Cryptochrome 2B, partial ... 33 0.34
TC225251 weakly similar to GB|AAO64828.1|29028898|BT005893 At3g5... 33 0.34
TC224744 similar to UP|Q09085 (Q09085) Hydroxyproline-rich glyco... 32 0.77
BE807854 32 0.77
TC224765 similar to UP|Q09082 (Q09082) Extensin (Class I), parti... 32 0.77
TC232311 similar to UP|Q8GU53 (Q8GU53) SMC5 protein, partial (14%) 31 1.3
TC206354 30 2.2
TC204252 weakly similar to UP|Q948Y7 (Q948Y7) VMP3 protein, part... 30 2.9
TC225250 weakly similar to GB|AAO64828.1|29028898|BT005893 At3g5... 30 2.9
BI315593 weakly similar to GP|4454049|emb| 98b like protein {Ara... 30 2.9
TC219110 protein kinase 2 30 2.9
TC208144 similar to UP|Q8VYU3 (Q8VYU3) GTP cyclohydrolase I , p... 30 2.9
BQ299569 30 3.8
AW306786 30 3.8
TC207505 30 3.8
TC204712 G.max mRNA for ATP synthase subunit 28 8.5
>TC216885
Length = 1122
Score = 40.0 bits (92), Expect = 0.003
Identities = 33/122 (27%), Positives = 61/122 (49%), Gaps = 11/122 (9%)
Frame = +3
Query: 457 STAEGEKLQADYTALRTE----HAKCDDRLDKVLTEAARDKITIDKKLVSIANELVEARF 512
+TA KL+A+ ++ E + + L A R+K + KKL++ + V+
Sbjct: 264 ATAAVRKLEAEKAEIKAELEASKLSASESVTSCLQVAKREKKCL-KKLLTWEKQKVKIHQ 440
Query: 513 ELVCRSERITDLEEEI-------KETKQEAQLALAAKDDALALKDQELTSLRAELEEKKR 565
++ ++I +++EE+ KET+ + L AK++ALAL ++E S A KR
Sbjct: 441 DISDEKQKILEIQEELAQIKQCAKETEVTRKEELKAKEEALALIEEERRSKEAAEANHKR 620
Query: 566 DL 567
+L
Sbjct: 621 NL 626
>TC212535
Length = 757
Score = 29.3 bits (64), Expect(2) = 0.039
Identities = 19/62 (30%), Positives = 29/62 (46%)
Frame = +1
Query: 171 FFCDVLADINVAPCQLHPNAWAFMRCFEILCVAIQVTPSPVHFFYLYDVDAKSLKAKGWV 230
F DVL N AP QLHPN ++ F IL ++ P+ F + + + + W+
Sbjct: 214 FHHDVLHIPNTAPSQLHPNG*VAIQAFCILYRFFRMEPTTGLFLHHF-------QTRKWI 372
Query: 231 SL 232
L
Sbjct: 373 KL 378
Score = 25.8 bits (55), Expect(2) = 0.039
Identities = 18/59 (30%), Positives = 25/59 (41%)
Frame = +2
Query: 113 SPDFFEQTSGVFLFRHRCQPATYPFFNPFLTPSSARYHIFYVYEYQFTELGIKFPFSSF 171
S D ++ VFL R R +P T + FYVY+ F L ++ PF F
Sbjct: 41 STDAYDNPD*VFLERVRPRPIHREPNGELPTKVVSLRDYFYVYD*IFCNLHVEIPFDYF 217
>TC221843
Length = 555
Score = 33.1 bits (74), Expect = 0.34
Identities = 21/62 (33%), Positives = 27/62 (42%)
Frame = +2
Query: 78 PTNSTRTPRAPCKTSPYAYKNPAPSSLLTFQTPPYSPDFFEQTSGVFLFRHRCQPATYPF 137
P + + PR +T+P + P SLL PP P FF Q + RHR T P
Sbjct: 353 PRHLPKPPRHVLRTAPQKRRAPRRKSLLP---PPSKPFFFSQELDETILRHRGHLNTVPN 523
Query: 138 FN 139
N
Sbjct: 524 VN 529
>BU927182
Length = 447
Score = 33.1 bits (74), Expect = 0.34
Identities = 22/59 (37%), Positives = 30/59 (50%)
Frame = +3
Query: 338 KKKRHQRDNEVCENSNPVRQGTGEKESRTALREKEGHFDLAEKEARPNLGEKEKEVPSD 396
+K+R +R+ EV E R+ EK+ R +E E EKE + EKEKEV D
Sbjct: 147 EKERREREKEV-EKDRREREKEVEKDRREREKEVEKDRREKEKEVEKDRREKEKEVEKD 320
Score = 31.2 bits (69), Expect = 1.3
Identities = 25/61 (40%), Positives = 31/61 (49%), Gaps = 2/61 (3%)
Frame = +3
Query: 338 KKKRHQRDNEVCENSNPVRQGTGEKESRTALREKEGHFDL--AEKEARPNLGEKEKEVPS 395
+K R +R+ EV E R+ EK+ R REKE D EKE + EKEKEV
Sbjct: 114 EKDRREREKEV-EKERREREKEVEKDRRE--REKEVEKDRREREKEVEKDRREKEKEVEK 284
Query: 396 D 396
D
Sbjct: 285 D 287
Score = 31.2 bits (69), Expect = 1.3
Identities = 22/66 (33%), Positives = 31/66 (46%)
Frame = +3
Query: 338 KKKRHQRDNEVCENSNPVRQGTGEKESRTALREKEGHFDLAEKEARPNLGEKEKEVPSDP 397
+K R +R+ EV E R+ EK+ R +E E EKE + E+EKEV D
Sbjct: 180 EKDRREREKEV-EKDRREREKEVEKDRREKEKEVEKDRREKEKEVEKDRREREKEVVKDR 356
Query: 398 STMLRD 403
+ D
Sbjct: 357 KKIEND 374
Score = 30.0 bits (66), Expect = 2.9
Identities = 24/90 (26%), Positives = 35/90 (38%)
Frame = +3
Query: 334 TENPKKKRHQRDNEVCENSNPVRQGTGEKESRTALREKEGHFDLAEKEARPNLGEKEKEV 393
+E KK + +R E + R EK+ R +E E EKE + E+EKEV
Sbjct: 33 SERRKKLQKERKKEFEKEHEGERVRVREKDRREREKEVEKERREREKEVEKDRREREKEV 212
Query: 394 PSDPSTMLRDATDHVEFLLSRINHDYLEKE 423
D ++ + D EKE
Sbjct: 213 EKDRREREKEVEKDRREKEKEVEKDRREKE 302
>TC205198 similar to UP|Q6YBV7 (Q6YBV7) Cryptochrome 2B, partial (58%)
Length = 1040
Score = 33.1 bits (74), Expect = 0.34
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -1
Query: 42 TEAEWSLHQSFAFIFINAPPALPNVIIRSCHHES 75
T WSLHQ AF + + A P ++++ C H S
Sbjct: 371 TRVRWSLHQPSAFSWSSLVDAAPRILLKPCQHFS 270
>TC225251 weakly similar to GB|AAO64828.1|29028898|BT005893 At3g56480
{Arabidopsis thaliana;} , partial (48%)
Length = 1272
Score = 33.1 bits (74), Expect = 0.34
Identities = 43/175 (24%), Positives = 79/175 (44%), Gaps = 6/175 (3%)
Frame = +1
Query: 401 LRDATDHVEFLLSRINHDYLEK---EVFGKGIDDAGQECVASLFHTGCIFAHAFQKFGAS 457
LR+A + +L + D LE V G+ DD +E +A + +
Sbjct: 37 LREAASLEKHVLLKKLRDALESLKGRVAGRNKDDV-EEAIAIVEALAVQLTQREGELIQE 213
Query: 458 TAEGEKLQADYTALRTEHAKCDDRLDKVLTEA---ARDKITIDKKLVSIANELVEARFEL 514
AE +KL A++ +E AK K++ E AR +I + V E ++ E
Sbjct: 214 KAEVKKL-ANFLKQASEDAK------KLVDEERAFARAEIEDARAAVQRVEEALQEH-ER 369
Query: 515 VCRSERITDLEEEIKETKQEAQLALAAKDDALALKDQELTSLRAELEEKKRDLLK 569
+ ++ D+E+ +KE ++ ++ + + + + EL +LRA+L EK R L+
Sbjct: 370 MSQASGKQDMEQLMKEVQEARRIKMLHQPSKVMDMEHELRALRAQLAEKTRQYLR 534
>TC224744 similar to UP|Q09085 (Q09085) Hydroxyproline-rich glycoprotein
(HRGP) (Fragment), partial (30%)
Length = 592
Score = 32.0 bits (71), Expect = 0.77
Identities = 20/59 (33%), Positives = 29/59 (48%)
Frame = +1
Query: 54 FIFINAPPALPNVIIRSCHHESRFPTNSTRTPRAPCKTSPYAYKNPAPSSLLTFQTPPY 112
+ + + PP P I +S S PT ++P P K+ PY Y++P P S PPY
Sbjct: 217 YYYKSPPPPSPIYIYKSPPPPS--PTYVYKSPPPPVKSPPYYYQSPPPPS--PKPKPPY 381
>BE807854
Length = 376
Score = 32.0 bits (71), Expect = 0.77
Identities = 19/58 (32%), Positives = 28/58 (47%), Gaps = 3/58 (5%)
Frame = -3
Query: 74 ESRFPTNSTRTPRAPCKTSPYAYKNPA---PSSLLTFQTPPYSPDFFEQTSGVFLFRH 128
+S+FP S +P PC + Y P PSSL TFQ+ + F+ S + + H
Sbjct: 314 QSQFPCQSASSPLQPCSHTGEIYDYPLD*FPSSLATFQSSMLLANEFQFHSRIAMPHH 141
>TC224765 similar to UP|Q09082 (Q09082) Extensin (Class I), partial (46%)
Length = 708
Score = 32.0 bits (71), Expect = 0.77
Identities = 20/59 (33%), Positives = 29/59 (48%)
Frame = +3
Query: 54 FIFINAPPALPNVIIRSCHHESRFPTNSTRTPRAPCKTSPYAYKNPAPSSLLTFQTPPY 112
+ + + PP P I +S S PT ++P P K+ PY Y++P P S PPY
Sbjct: 84 YYYKSPPPPSPVYIYKSPPPPS--PTYVYKSPPPPVKSPPYYYQSPPPPS--PKPKPPY 248
>TC232311 similar to UP|Q8GU53 (Q8GU53) SMC5 protein, partial (14%)
Length = 664
Score = 31.2 bits (69), Expect = 1.3
Identities = 31/120 (25%), Positives = 47/120 (38%), Gaps = 3/120 (2%)
Frame = +1
Query: 450 AFQKFGASTAEGEKLQADYTALRTEHAKCDDRLDKVLTEAARDKITIDKKLVSIANELVE 509
AF +F A E E + + + D K +D K SIA E
Sbjct: 43 AFIEFDAKIVEMEANLKQHEKFALQASLHFDNCKKESENCRQDLTDSLKYAKSIARLTPE 222
Query: 510 ARFELVCRSERITDLEEEIKETKQEAQLALAAKDDALAL---KDQELTSLRAELEEKKRD 566
+ E + I DLE I++T EA L + L + Q++ L A+LE K++
Sbjct: 223 LKKEFLEMPTTIEDLEAAIQDTTSEANSILFVNHNILEQYEDRQQQIEDLAAKLEADKKE 402
>TC206354
Length = 548
Score = 30.4 bits (67), Expect = 2.2
Identities = 17/37 (45%), Positives = 20/37 (53%), Gaps = 3/37 (8%)
Frame = -2
Query: 75 SRFPTNSTRTPRAPCKTSPYAYKNPA---PSSLLTFQ 108
+RFP S +P APC + Y P PSSL TFQ
Sbjct: 367 NRFPFLSASSPLAPCSHTGKIYDYPLD*FPSSLATFQ 257
>TC204252 weakly similar to UP|Q948Y7 (Q948Y7) VMP3 protein, partial (7%)
Length = 472
Score = 30.0 bits (66), Expect = 2.9
Identities = 22/67 (32%), Positives = 31/67 (45%), Gaps = 3/67 (4%)
Frame = +3
Query: 51 SFAFIFINAPPALPNVIIRSCHHESRFPTNSTRTPRAPCKTSPYA---YKNPAPSSLLTF 107
SF F++ P LP++++ + PT T P AP TSP +P+PS L
Sbjct: 111 SFYFLYFPPLPILPSLVLPRSS-TAPTPTAPTSPPSAPPSTSPSTPPTAPSPSPSPPLLP 287
Query: 108 QTPPYSP 114
P SP
Sbjct: 288 PPPAGSP 308
>TC225250 weakly similar to GB|AAO64828.1|29028898|BT005893 At3g56480
{Arabidopsis thaliana;} , partial (54%)
Length = 1302
Score = 30.0 bits (66), Expect = 2.9
Identities = 15/47 (31%), Positives = 28/47 (58%)
Frame = +2
Query: 523 DLEEEIKETKQEAQLALAAKDDALALKDQELTSLRAELEEKKRDLLK 569
DLE+ +KE ++ ++ + + + + EL +LRA+L EK R L+
Sbjct: 173 DLEQLMKEVQEARRIKMLHQPSKVMDMEHELRALRAQLAEKSRLYLR 313
>BI315593 weakly similar to GP|4454049|emb| 98b like protein {Arabidopsis
thaliana}, partial (13%)
Length = 421
Score = 30.0 bits (66), Expect = 2.9
Identities = 22/73 (30%), Positives = 38/73 (51%)
Frame = +1
Query: 498 KKLVSIANELVEARFELVCRSERITDLEEEIKETKQEAQLALAAKDDALALKDQELTSLR 557
KK S EL+E + ++ ++++ K++ + L KD+AL KD+EL + R
Sbjct: 226 KKQQSFEKELLEMQ-----------EMLQQMRLEKEKTEELLKLKDEALKQKDEELKN-R 369
Query: 558 AELEEKKRDLLKK 570
+EK + LKK
Sbjct: 370 GREQEKLQSELKK 408
>TC219110 protein kinase 2
Length = 668
Score = 30.0 bits (66), Expect = 2.9
Identities = 19/59 (32%), Positives = 26/59 (43%), Gaps = 13/59 (22%)
Frame = -1
Query: 175 VLADINVAPCQL-------HPNAWAFMRCFEIL------CVAIQVTPSPVHFFYLYDVD 220
+L ++ PC L H AW + CF + ++ QV P P FYL DVD
Sbjct: 374 LLTSVDFCPCFLNDLHDFFHTLAWLVLLCFLVTPSFSLNYLSWQVLPKPKVLFYLRDVD 198
>TC208144 similar to UP|Q8VYU3 (Q8VYU3) GTP cyclohydrolase I , partial (28%)
Length = 1195
Score = 30.0 bits (66), Expect = 2.9
Identities = 18/57 (31%), Positives = 27/57 (46%)
Frame = -2
Query: 325 LAKFPPNFNTENPKKKRHQRDNEVCENSNPVRQGTGEKESRTALREKEGHFDLAEKE 381
L +FP F ++ K R Q+DN+V NP + + T +R E H D K+
Sbjct: 711 LDEFPLFFLRDHAKDSRRQKDNDV--TINPQTNSDHKSHTETKIRGTEKHKDYPLKD 547
>BQ299569
Length = 423
Score = 29.6 bits (65), Expect = 3.8
Identities = 20/59 (33%), Positives = 24/59 (39%)
Frame = +3
Query: 78 PTNSTRTPRAPCKTSPYAYKNPAPSSLLTFQTPPYSPDFFEQTSGVFLFRHRCQPATYP 136
P + PR +T+P P SLL PP P FF Q + RHR T P
Sbjct: 171 PRHLPEPPRHVLRTAPEKRGAPRRRSLLP---PPSQPFFFSQELDKTILRHRGHVNTIP 338
>AW306786
Length = 347
Score = 29.6 bits (65), Expect = 3.8
Identities = 23/75 (30%), Positives = 34/75 (44%)
Frame = +3
Query: 82 TRTPRAPCKTSPYAYKNPAPSSLLTFQTPPYSPDFFEQTSGVFLFRHRCQPATYPFFNPF 141
TR P +P PY YK+P P S +PP P ++ Q++ PA Y + +P
Sbjct: 3 TRPPPSPSPPPPYYYKSPPPPS----PSPP--PAYYYQSA----------PAPYHYTSP- 131
Query: 142 LTPSSARYHIFYVYE 156
P S Y+Y+
Sbjct: 132 -PPPSPAPAPKYIYK 173
>TC207505
Length = 1191
Score = 29.6 bits (65), Expect = 3.8
Identities = 30/99 (30%), Positives = 40/99 (40%), Gaps = 13/99 (13%)
Frame = -2
Query: 29 GRSLFKSITRHFRTEAEWSLHQSFAFIFINAPPALPNVIIRSCHHE-SRFPTNSTRTPRA 87
GR FKS TR LH FA N+ ++P + S ++ S T +
Sbjct: 575 GRENFKSATRTMPLRTRL-LH--FAPTSSNSYGSIPQASVSSSSNKLDNTEQESGPTCKT 405
Query: 88 PCKTSPYAY------------KNPAPSSLLTFQTPPYSP 114
CK SPY + + PSSLLT PP +P
Sbjct: 404 LCKLSPYDFFKTGNACRTSDEHDAPPSSLLTSLIPPLAP 288
>TC204712 G.max mRNA for ATP synthase subunit
Length = 773
Score = 28.5 bits (62), Expect = 8.5
Identities = 25/85 (29%), Positives = 40/85 (46%), Gaps = 1/85 (1%)
Frame = +3
Query: 480 DRLDKVLTEAARDKITIDKKLVSIA-NELVEARFELVCRSERITDLEEEIKETKQEAQLA 538
D LDKV + + + DKK + + E + +L R E + EEE++ +AQL
Sbjct: 513 DALDKVEKDLKKPLLRNDKKGMDLLLAEFDKINKKLGIRKEDLPKYEEELELXVAKAQLE 692
Query: 539 LAAKDDALALKDQELTSLRAELEEK 563
KD AL+ E R E +++
Sbjct: 693 ELKKD---ALEAMETQKKREEFKDE 758
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.320 0.134 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,954,023
Number of Sequences: 63676
Number of extensions: 450297
Number of successful extensions: 2979
Number of sequences better than 10.0: 63
Number of HSP's better than 10.0 without gapping: 2680
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2937
length of query: 571
length of database: 12,639,632
effective HSP length: 102
effective length of query: 469
effective length of database: 6,144,680
effective search space: 2881854920
effective search space used: 2881854920
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)
Lotus: description of TM0192.11