BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0190.5
(331 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC225074 similar to GB|AAL24359.1|16649015|AY059877 ABC transpor... 32 0.52
TC231094 similar to UP|Q944A7 (Q944A7) AT4g35230/F23E12_210, par... 31 0.68
TC221982 similar to UP|O81326 (O81326) F3D13.3 protein, partial ... 30 1.5
TC223552 homologue to UP|O81138 (O81138) AP2 domain family trans... 29 3.4
TC203370 weakly similar to UP|Q9LX02 (Q9LX02) ESTs AU082316(E336... 29 3.4
TC226157 similar to UP|Q86EG2 (Q86EG2) Clone ZZD434 mRNA sequenc... 29 3.4
TC220565 29 3.4
BE609593 homologue to PIR|T06218|T062 catalase (EC 1.11.1.6) - s... 28 5.7
BQ610423 similar to PIR|T07612|T076 cellulase (EC 3.2.1.4) Cel3 ... 28 5.7
TC232889 weakly similar to UP|O65340 (O65340) Metalloproteinase ... 28 7.5
AW164225 28 7.5
TC226546 similar to UP|O04331 (O04331) Prohibitin 3, partial (66%) 27 9.8
>TC225074 similar to GB|AAL24359.1|16649015|AY059877 ABC transporter-like
{Arabidopsis thaliana;} , partial (43%)
Length = 1493
Score = 31.6 bits (70), Expect = 0.52
Identities = 23/61 (37%), Positives = 29/61 (46%), Gaps = 10/61 (16%)
Frame = -1
Query: 221 EGEIVGIKCWSQVPHQRSQDVVSKISLVFPLCLALWVLAVTL----------PNRQKKIR 270
E E G+ W PHQ DV+S SL+FPLCL + + V L PN K+
Sbjct: 491 ETERAGLLQWLINPHQ*QPDVLSS-SLLFPLCLMVV*IQVQLFPSLSLSFVQPNASSKLL 315
Query: 271 R 271
R
Sbjct: 314 R 312
>TC231094 similar to UP|Q944A7 (Q944A7) AT4g35230/F23E12_210, partial (20%)
Length = 473
Score = 31.2 bits (69), Expect = 0.68
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 7/60 (11%)
Frame = +1
Query: 274 KNENERVR------VCRMRSC-SWERSKSSNKEGPEEVTTKGENRGKARTTVCPRLLSRW 326
+ E ER R V R C WER + + K ++ TT+G R + R + P L SRW
Sbjct: 7 RRERERERGGKGWVVANHRRC*EWERGRLTLKRKRKK-TTRGSLRPRKRALISPSLSSRW 183
>TC221982 similar to UP|O81326 (O81326) F3D13.3 protein, partial (5%)
Length = 679
Score = 30.0 bits (66), Expect = 1.5
Identities = 22/51 (43%), Positives = 32/51 (62%), Gaps = 2/51 (3%)
Frame = +2
Query: 3 RQDL-LVSCSSAHGLPCLPQQVVSEPMVGVAMVTAPCVE-SLPSGFGLRCG 51
R+DL L++CSS GLP LP +++S +V +M+ V+ LPS F CG
Sbjct: 305 RKDLYLLACSSLWGLPLLPFRLLSS-LVKHSMLAVLLVQ**LPSDFTQYCG 454
>TC223552 homologue to UP|O81138 (O81138) AP2 domain family transcription
factor homolog (AP2 domain transcription factor)
(ABI4:abscisic acid-insensitive 4 ) (ABI4), partial (5%)
Length = 478
Score = 28.9 bits (63), Expect = 3.4
Identities = 13/33 (39%), Positives = 23/33 (69%)
Frame = +1
Query: 2 WRQDLLVSCSSAHGLPCLPQQVVSEPMVGVAMV 34
WR L++S +S G+P LP +++ PM+G+ M+
Sbjct: 361 WRALLIMSLTS-RGVPDLPLRLLPRPMIGLPMM 456
>TC203370 weakly similar to UP|Q9LX02 (Q9LX02) ESTs AU082316(E3368), partial
(27%)
Length = 1507
Score = 28.9 bits (63), Expect = 3.4
Identities = 22/79 (27%), Positives = 35/79 (43%), Gaps = 19/79 (24%)
Frame = +2
Query: 256 WVLAVTLPNRQKKIRRNRKNENERVRVCRMRSCSW-------------ERSK------SS 296
WV V +KK +KN+ ++V+V + +S W E+ K +
Sbjct: 407 WVAEVAEEEDKKK----KKNKKKQVKVLKDKSARWTLQLENEDAEEEEEKKKKLLKGVAR 574
Query: 297 NKEGPEEVTTKGENRGKAR 315
N + E+T KGEN G +R
Sbjct: 575 NVKWTAEITGKGENSGSSR 631
>TC226157 similar to UP|Q86EG2 (Q86EG2) Clone ZZD434 mRNA sequence, partial
(12%)
Length = 563
Score = 28.9 bits (63), Expect = 3.4
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +2
Query: 53 QDLLGVSPRPCPMGPRRDSPQ 73
QDL+G PR P P RDSP+
Sbjct: 311 QDLVGADPRRVPARPLRDSPR 373
>TC220565
Length = 653
Score = 28.9 bits (63), Expect = 3.4
Identities = 19/39 (48%), Positives = 24/39 (60%)
Frame = +2
Query: 232 QVPHQRSQDVVSKISLVFPLCLALWVLAVTLPNRQKKIR 270
QVP RS V + L+ LCLA W+L TL N QKK++
Sbjct: 464 QVPRPRSSVEVIYLPLLLKLCLAHWLLH-TLWN-QKKVK 574
>BE609593 homologue to PIR|T06218|T062 catalase (EC 1.11.1.6) - soybean
(fragment), partial (21%)
Length = 391
Score = 28.1 bits (61), Expect = 5.7
Identities = 12/37 (32%), Positives = 19/37 (50%)
Frame = +2
Query: 211 MGDVVEGLTFEGEIVGIKCWSQVPHQRSQDVVSKISL 247
+G + G+T E V I WSQ Q + S++S+
Sbjct: 134 VGSLTHGITHEIRSVWISYWSQADRSLGQKIASRLSM 244
>BQ610423 similar to PIR|T07612|T076 cellulase (EC 3.2.1.4) Cel3
membrane-anchored - tomato, partial (7%)
Length = 435
Score = 28.1 bits (61), Expect = 5.7
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +1
Query: 265 RQKKIRRNRKNENERVRVCRMRSCS 289
R+++ R R+ E ER R CR SC+
Sbjct: 100 RERERERERERERERERKCRFSSCT 174
>TC232889 weakly similar to UP|O65340 (O65340) Metalloproteinase , partial
(38%)
Length = 734
Score = 27.7 bits (60), Expect = 7.5
Identities = 17/53 (32%), Positives = 20/53 (37%), Gaps = 8/53 (15%)
Frame = +2
Query: 286 RSCSWERSK--------SSNKEGPEEVTTKGENRGKARTTVCPRLLSRWGRWR 330
++CS RS+ SS K T G A T R WGRWR
Sbjct: 104 KACSPPRSRAGLR*RR*SSAKRRRTSAPTSGSGSSAATTATGSRSTGAWGRWR 262
>AW164225
Length = 388
Score = 27.7 bits (60), Expect = 7.5
Identities = 14/33 (42%), Positives = 23/33 (69%)
Frame = +3
Query: 264 NRQKKIRRNRKNENERVRVCRMRSCSWERSKSS 296
N+++KIR RK ER+R R R +W+R++S+
Sbjct: 42 NQKRKIRFQRKAAAERIR-RRCRRRAWKRTRST 137
>TC226546 similar to UP|O04331 (O04331) Prohibitin 3, partial (66%)
Length = 863
Score = 27.3 bits (59), Expect = 9.8
Identities = 13/53 (24%), Positives = 25/53 (46%), Gaps = 2/53 (3%)
Frame = -3
Query: 265 RQKKIRRNRKNENERVRVCRMRS--CSWERSKSSNKEGPEEVTTKGENRGKAR 315
+ KKI N + ++++ CR + W + + E E+V + G+ R R
Sbjct: 660 KHKKITSNNRKTKDKIQACRDTASLSPWPQRSAGRTESHEQVLSTGQVRNIRR 502
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.320 0.136 0.420
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,427,639
Number of Sequences: 63676
Number of extensions: 226815
Number of successful extensions: 1402
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1372
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1402
length of query: 331
length of database: 12,639,632
effective HSP length: 98
effective length of query: 233
effective length of database: 6,399,384
effective search space: 1491056472
effective search space used: 1491056472
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)
Lotus: description of TM0190.5